mRNA_D-dudresnayi_contig9837.28646.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9837.28646.1
Unique NamemRNA_D-dudresnayi_contig9837.28646.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9837.28646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9837contigD-dudresnayi_contig9837:2838..9145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size250
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9837.28646.1prot_D-dudresnayi_contig9837.28646.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9837 2851..9145 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.1565642-UTR-D-dudresnayi_contig9837:2837..28501622930942.1565642-UTR-D-dudresnayi_contig9837:2837..2850Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9837 2838..2850 +
1690557974.1507251-UTR-D-dudresnayi_contig9837:2837..28501690557974.1507251-UTR-D-dudresnayi_contig9837:2837..2850Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9837 2838..2850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.1773727-CDS-D-dudresnayi_contig9837:2850..29161622930942.1773727-CDS-D-dudresnayi_contig9837:2850..2916Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9837 2851..2916 +
1690557974.161037-CDS-D-dudresnayi_contig9837:2850..29161690557974.161037-CDS-D-dudresnayi_contig9837:2850..2916Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9837 2851..2916 +
1622930942.1994429-CDS-D-dudresnayi_contig9837:8974..91451622930942.1994429-CDS-D-dudresnayi_contig9837:8974..9145Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9837 8975..9145 +
1690557974.1736748-CDS-D-dudresnayi_contig9837:8974..91451690557974.1736748-CDS-D-dudresnayi_contig9837:8974..9145Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9837 8975..9145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9837.28646.1

>prot_D-dudresnayi_contig9837.28646.1 ID=prot_D-dudresnayi_contig9837.28646.1|Name=mRNA_D-dudresnayi_contig9837.28646.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=79bp
MLVVMGAMAAVVVVGRLHYCLLAYQWLRRLLLTASSEVMVLAVLMTAILS
EGLAGGQVYALWLIFIMKSTCAPQLKKI*
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mRNA from alignment at D-dudresnayi_contig9837:2838..9145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9837.28646.1 ID=mRNA_D-dudresnayi_contig9837.28646.1|Name=mRNA_D-dudresnayi_contig9837.28646.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=6308bp|location=Sequence derived from alignment at D-dudresnayi_contig9837:2838..9145+ (Desmarestia dudresnayi DdudBR16 monoicous)
CAGCAACGGGATCATGCTTGTGGTGATGGGTGCCATGGCTGCTGTTGTTG
TTGTTGGAAGACTGCACTATTGTTTGTTGGTGAGATGGGGTTGCTGTTGC
AGAGTGAGAAGGTGGGGCTGGCAGAAAGAATATCACAAGGGACGTAGCAG
CAGTACAACAGCAGAGACTCAGATCTCGCCTTGGTCAGGTGATCGTCATA
GCTTGTCCGGTCAATAGTGACTGTACTGTGGGCGCTGAGTCGCGCTTATA
ATAGTTGCTGTTGCGGTGTTCCTAGTCCTGACTCAAAACTAAAAGGAACA
GCGTCAGCTCTAAACATCGTCACACAGCACTCACACTTTTATTTTCTGTA
CGACTTCGTACAGTCAGTGCATTCGGTAGTAGTACTTATTGTAGTCAGTA
CTATCGTACTTTAATCCGTTGTACAATTCCTCCCAGCTGCCCCGCCCGCC
CCTGCCCTCGGCGAGGCATGACCAGCCAGACTGGTTATACGCAGCGGTGG
TCTTTCCGGCGAGAATAGGGCTGGACTCACCACGAGGAGCGATACCTTCT
TGCTGCTGATCTCTTTGGTTGGTGGTAGAGTTGGGTTGCAGGCGGTGCGT
CAGGCACAACAACTAACTGTTTACGGATCCTGGAAGTTGCTGCTGCTCTA
TAGGTAGTGGTATAGTTGTTGTGTAGTAGTAGTGGTATAGTAGTAGGTAG
TAGGTAGTAGGTAGAAATTCTGTTAATAGTATGAAATGCCAAAAAATTAA
TTAATTCATACTAATTCAAGACATTAATTAATTTTCACTTTCGTAGACGA
TAAGATATAGACCAATCTAGGATTGCCCCACACGCTTGACAGTGCAGAAT
TCAACCATGGTTCGTCGCCCCCGGATGTTCGCAAAAACCGCAAAATACGA
GTAACAAAAACGGCTTTACATTTCATTGCAAATAACGCCCTTCTTTTTGC
CCGGAACGGCACAACAAACCATAAGAGATTCAAAAACGCACCAAATAAAT
GCGGCAATGTTACAGATACGACAAAAGCACCATCTGACCGCACCAAACCG
CGGAGTGCGAGAGTCACACTGCACCCAAAGCAACGTTTGATAGCTTGTGA
GTTGGCCCTTGATCAGGCGAGGACGATGTAGTTGGTTTGGGATCAATACG
TCCCGAATCGCAGGGGCAACGACGTTCTTTGTGACGGCGTCGTGAAGCAA
ACAGTCACTTGATTGAGCACATTTTTGCTTGAAAAATTACGGGGCAAGTT
CACGCGGATAGGTGTCACTCCTCCGATACTGCATGGATTTTGCTCAAACG
TTGCATGCCGGTTACAGCTAATCATGAGCTATCGTGCAATAGCCCGTATG
TCTCCGTGGGCTGTCTGTGGGTGTCGCCGTGCGACGCAAGTCTAGGTACA
CCTCTCACAACAACTACTCTGAGCACCACACTTTCTGCCTCTTCATTCTG
GCAACTTGCTGTACAGTCCTGTTCTGTTCCTCTTCGAAGATTGAACAGAT
ATTGGGGGAAATTCCAGGTACCCATATGGGTTGATAAGCGCCGTCCACCC
AGACTGCTATTATACTACTATTACTGAGCCATGTACCTATGATGAAGTTT
GTGTTCGTTGCCTTGCGGATTTCCCCTCACACCCTTGGCATGCGCCCTAC
AATCCTGCGAGCCCGCCGGGCAGTTCACTGCCCGGTAGGCGCCTTGTAAA
CCTATTTAGGATTGTCCCAAACGCTTGTCAGCGCAGAGTTCAACCATTGT
TCCTTCGCCCCCGGATCTTCGCGGAAGAAACCGCACAAATACGAGTAACA
AAAACGGCTTTACATTTCATTGCAAGTAACGCCCTTCTTTTTGCCCGGAA
CGGCAAAACAAATCATAAGAGATTCAAAAACGCACCACATGCGGCAATGT
TACCGATACGACAAAAGCACCATCAGACCGCACAAAACCGCAGAGTGCCA
GAGTCACACTGCAACCGTGGAGTGCCAGAGTCACACTGCACCCGAAGCAA
CGTTTGATAGCTTGTGAGTTGGCCCTTGATCAGGCGAGGACGATGTAGTT
GGTTTGAGATCAATACGTCCCGAATCGCAGGAGCAACGATGTTCTTTGTG
ACGGCGTCGTGAAGCAAACAGTCACTTGAGCACGCTTTTGCTTGAAAAAT
TACGGGGCAAGTTCACGCGGATAGGTGTCACCCCTCCGATACTGCATGGA
CTTCGCTCAAATGTGGCGCATGCCGGTTGCAGCTAATCATGAGCTATCGT
GCAATAGCTCGTATGTCTCTGTGGGCTGTCTGTGGGTGTCGCCGTGCGAT
GCAAGTGTAGGTATACCTCTCACAACAACTACTCTGAGCACCACACTTTC
TGCCTCTTCATTCTGGCAACTTGCTGTACAGTCCTGTTTTGTTCCTCATA
GAAGATTGAACGGATATTGCGGGAAAATTCCAGGTACCCATATGGGTTGA
TAAGAGCCGTCCACCCAGACTGTTATTATACTACTATTACTGAGCCATGC
ACCTACGATGAAGTTTGTGTTCGTTGCCTTGCGGATTTCTCCTCACACCC
TTGGCATGCGCCCTAAAATCCTGCGAGCCTGCCGGGCGCCTTGTAAACCT
ATCTAGGATTGTCCCAAACGCTTGACAGCGCAGAGTTCAACCATTGCTCC
TCGCCCCCGGATCTTCGCGGAAAAAACCGCACAAATACGAGTTAAGAAAA
ACGGCTTTACATTTCATTGCAAATAACGCCCTTCTTTTTGCCCGGAACGG
CACAACAAATCATAAGAGATTCAAAACGCACCACATGCGGCAATGTTACC
GATACGACCAAAGCACCATCTGACCGCACAAAACCGTGGAATTCGAGAGT
CACACTGCACTTAAAGCAACGTTTGATAGCTTTTGAGTTGGCCCTTGATC
AGGCGAGGACGATGTAGTTGGTTTGGGATCAATACGTCCCGAATCGCACG
AGCAACGACGTTCTTTGTGACGGCGTCGTGAAGAAAACAGTCACTTGAGC
ACGTTTTTGCTTGAAAAATTACGGGACAAGTTCAAGCGGATAGGTGTCAC
TCCTCCGATACTGCATGGATTTTGCTCAAACGTGGCGTATGTCGATTGCA
GCTAATCATGAGCTATCGTGCAATAGCTCGTATGTCTCCGTGGGCTGTCT
GTGGGTGTCGCCGTGCGATGCAAGTATAGGTTCACCTCTCACAACAACTA
CTCTGAGCACCACACTTTCTGCCTCTTCATTCTGGCAACTTGCTGAACAT
TCCTGTTTTGTTCCTCTTCGAAGATTGAACGGATATTGGGGGAAAATTCC
AGTACCCATATGGGTTGATAAGAGCCGTCCATCCAGACTGTTATTATACC
ACTATTACTGAGCCATGCACCTACGATGAAGTTTGTGTTCGTTGCCTTGC
GGATTTCCCCTCACACCCTTGGCATGCGCCTCAAAATCCTGCGAGCCCGC
CGGGCAGTTCACTGCCTAGGCGCCTTGTAAACGCATATGATACATGATGT
TTGGACAACAGTAGCTATTCACGGTGAAGCCTGAACAATGTGCGCGGAGG
CAGATCGACACCGTCGCCGAAAGCAGACAGGTGCTACCTTGGTAGAGGCA
TCATCCGTTATGTGAGTAAGCTGGATTCGACAACAAGGGCTGGTTGGGGA
GACTGATCGTCGACGCGCTGCAGAAGGCCTGGTTACACCTTCTTCGTGGT
GCGAGATGTTTTATTTTCAAGACCTGTACCGAAGGGTGTAGAGGGAGGTT
TTCTTTACTCGCGCGGAGAAACAGAGAAACACGACTGGAAATAAGGAGCG
GCGAAGAACACGCGCGTGTGGGGCGGCTCAGGCTTGACCGGATGCTTGGG
ATGCTCCGTGGAGATCGTGTGAGAGCAGCATCATCAGCGAAAGGATATCG
ACGTCGCAACACCGTACGCGAAAAGGAGCAAGCGGATCATCTTTTTCCTT
TCTCTGGATTTCTTTCCTGGCGTCATGTTCCGCTATATCTGGACCACGCC
ATCTGTCATTATGGAAGTTGCGGTAGTTCGTGATATGCGGGCGACATTGT
GTTGCCTTTCGTCGAGAGCGTTATGCGCGGGTAGGCGACTACAAGGTAGT
GGCGTGGGTCGTAAGGGTCGTTTCTAACGGGCAAAAAAAAGTCCACAATC
GCGACCAAAAAAGATGACAAAAAAAAAAAAGTCACGATTTCAAAAGAAAA
GTCCACAATCGTGATTTTGAATCGAATTGAAAAAAACCTAAAAAAAAATC
ACGATTCGTGACTTTCAACAGGACTTTTGGCAAAAAAAGGTTTCCAAAAG
TCACGAAACCGGACTTTTTGTCACGATTGTGGACGTCTTTTTGCTCGTTA
GGGTCGTTTCTAATATATAGTCAGCGCTGACTTAGTGGTTCAGTGGTGGG
CTGCTTCTATCGAACAATGGAAGTCCCGGGTTCAATTCCCGCCAGGACAT
TTTTCCTATTACTTCAACAGAGAAAGACTGGGTCGTAATATAGGTAGTTG
CAGTGGCTCCGGGTTCCCTGGTGAACAGTGGTGTCTGGCGAGGGGCGTTC
GCGCCTCGGAGAGACTGGCGGGAAGGGTTATTGAACCCAAAGGTTCTTCT
ATCGAACAGGAAACACCATGTGCCTAGCTCACACACATGCCGTTCCATCA
TTCCCGCCACACACATCCTTCCAACATATCACTACAGACCCCAAACATTT
CGTAGATATGTGTATCACGCACAGAGTACATACAAACAAGCTACGCTGAA
CATCCCCCCCCCCCCTCCCCCCCCCGAGTGGTGTGGGATTTGCCGAAGCT
CACCCACTAACAAAACCCAAACTAAGTCGCCCTGCCCGCCGGACTCGGTC
CAGTTGCCGTGCATGATGATGAAACGTTGTGGGTGTGCCCTTGTCATTGC
GTTTCGTTTCGTAGGCAGGCAGCCAGGTTATGTTTGGGCGACTGTGCCTA
AAGTTAGTACCACAACGACGAGATTGCCATAAATCGGCTACAACTCGATA
TGATCATACGCGGGGGGGAGTGGGGGGGGGGGGGGATACCTCGAAAGTAT
TGTCTATACAACTTTACACGCTACATATGTCAATCTATGAGGGACATGCG
TGCGGCGTGACCGCAACACGAGAATTTTGCACGATTTAGTTCGATGCATG
CGGCATGCGTGGTCCTGCCTGGTTGCGCCTTTTTGCGTCTCGTCTGTTCC
GTGTCCTTCTCTCTGTGCTATTTCGCGTAGCTCATTTCTTTCGGACGGCC
GGGACAACAATATAATGATTGTTTCCCGATGATTTCACCGTCGCTATTGT
TGAGTCTATAAAACGCCTGGGGTGAGCCCCAGCCTCCATCTAAATCCCCT
ACCCCCGATGGAGTTAGAGCGAATCCGAAATGCAAATGTGAAGTAGGCTG
ATGTGCACGCATCACCGCTTAGTCTCCAGATGACGTGATGTGTGTGTGGG
GGGGGGGGGCACCAAACAAGATGTAATGCATAAAATGAATTGATGACGCC
TGTATTGGACGCCGATCAAGGCTGAACTTTTTCCGTGCGTATTCAAGACG
ACTGCAATGTTGGTTGACGTCTATCATGCCGTAGGCCAGTCGGTGGAGCC
ACCAGGACCCGCAGCCCTATAGTTAACTAGCAGACCGGGCATGAGGCCCA
CGACCTCGTAACTGTGTGCGTTTTGAAATAGTGCTTCCACTAGCGTCGGG
TAGTTGTACAGTCGAACCCCAAACCTGGATCTCGATGGTGCTGTACGTAG
CAGCTATAGATTGGTGCCACAAGATTACTGTTTGGAGCTGTTTGGACATC
GTTTCGGGATTCGGCTGATGAAGAAATAAAATGCGTAGGTTTTGGGAGGA
GTGAAAACGAGCGGTCAAAAATCTCCTTTCAGCTTTCTTCTTTCAAAAAA
AGATACGAGTACGAGTAGCCGATTTATTTCTAGCCGCAACAGAGGACTAA
ACCCTGGAGGGATTTAGAATAGAGCTACGTATCAAGCCGGGGTTGTTGGA
AATTCGGCAATTGGACAAACGCCGACCTTTTTTTATACCCAACATGTGTT
GCGAATATTGCTGGGTATAATCCTCCACGTTTTTACTCGATCTCGCTCCT
CCTCTTTTCCTCTCGTTGGTTGTTCCGACCGCCGCAGGCCTACCAATGGT
TGAGAAGGTTGTTGTTGACCGCGTCATCTGAGGTTATGGTGCTAGCAGTG
CTGATGACGGCGATCTTGTCGGAGGGCCTCGCCGGAGGCCAGGTTTACGC
TCTTTGGCTGATTTTTATCATGAAGAGTACGTGTGCGCCCCAGCTAAAGA
AAATCTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9837:2838..9145+

>mRNA_D-dudresnayi_contig9837.28646.1 ID=mRNA_D-dudresnayi_contig9837.28646.1|Name=mRNA_D-dudresnayi_contig9837.28646.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at D-dudresnayi_contig9837:2838..9145+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCTTGTGGTGATGGGTGCCATGGCTGCTGTTGTTGTTGTTGGAAGACT
GCACTATTGTTTGTTGATGCTTGTGGTGATGGGTGCCATGGCTGCTGTTG
TTGTTGTTGGAAGACTGCACTATTGTTTGTTGGCCTACCAATGGTTGAGA
AGGTTGTTGTTGACCGCGTCATCTGAGGTTATGGTGCTAGCAGTGCTGAT
GACGGCGATCTTGTCGGAGGGCCTCGCCGGAGGCCAGGTTTACGCTCTTT
GGCTGATTTTTATCATGAAGAGTACGTGTGCGCCCCAGCTAAAGAAAATC
TGAGCCTACCAATGGTTGAGAAGGTTGTTGTTGACCGCGTCATCTGAGGT
TATGGTGCTAGCAGTGCTGATGACGGCGATCTTGTCGGAGGGCCTCGCCG
GAGGCCAGGTTTACGCTCTTTGGCTGATTTTTATCATGAAGAGTACGTGT
GCGCCCCAGCTAAAGAAAATCTGA
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