mRNA_D-dudresnayi_contig9826.28635.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9826.28635.1
Unique NamemRNA_D-dudresnayi_contig9826.28635.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9826.28635.1 vs. uniprot
Match: A0A7S3H411_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H411_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.450e-45
Identity = 88/142 (61.97%), Postives = 109/142 (76.76%), Query Frame = 3
Query:    3 LVTAALLLDFPYCFLIMILSGMLGEMYMGQVLATLTDLSVAPAHYITPSVALFMFVATIIGGNTPLLIPLVMESVGYSAQVYIDFTAASVYAGEQSVPVSE-QFSIQHRDARQLQYALFYVLGACYLLSGLLFLVSYYQMRN 425
            L+  A LL+FPYCFLIMI SGM+GEMYMGQ LAT+TD S+ PAH++TP+VALFMFV TIIGGN PL++PLV   VGY  +V I F AA VY+G      SE +F +Q+ DARQ+QY L YVL  CY +SG+L+L+SY QMR+
Sbjct:  545 LIVGAFLLEFPYCFLIMICSGMMGEMYMGQALATITDQSLTPAHHVTPAVALFMFVITIIGGNMPLVVPLVNSWVGYGGKVDISFDAAPVYSGTDEQDASEVEFVVQNNDARQMQYGLLYVLLTCYGVSGILYLISYRQMRS 686          
BLAST of mRNA_D-dudresnayi_contig9826.28635.1 vs. uniprot
Match: A0A482S9D4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9D4_9ARCH)

HSP 1 Score: 106 bits (264), Expect = 1.100e-25
Identity = 59/143 (41.26%), Postives = 88/143 (61.54%), Query Frame = 3
Query:    3 LVTAALLLDFPYCFLIMILSGMLGEMYMGQVLATLTDLSVAPAHYITPSVALFMFVATIIGGNTPLLIPLVMESVGYSAQVYIDFTAASVYAGEQSVPVSEQFSIQHRDARQLQYALFYVLGACYLLSGLLFLVSYYQMRNGR 431
            L+  +  L  P CFLI I SG +GE+Y+ Q LA +TD  +AP H   PSVALFM V T+IGGN PL IP ++  VG++  V +  +A      E       Q+++ + D++QLQY+L Y L ACY  + +L+L++++ MR  +
Sbjct:   53 LIAVSFFLPSPACFLIYIGSGAVGEVYLSQSLALITDAQIAPGHLTPPSVALFMMVVTLIGGNAPLFIPTLLPLVGFNQDVTLTISAKGSDPNESG---DVQYNVDNTDSKQLQYSLLYSLSACYGGAAVLYLLAFWMMRKDK 192          
BLAST of mRNA_D-dudresnayi_contig9826.28635.1 vs. uniprot
Match: UPI001604F53C (protein spinster homolog 1 isoform X1 n=4 Tax=Folsomia candida TaxID=158441 RepID=UPI001604F53C)

HSP 1 Score: 60.1 bits (144), Expect = 1.460e-7
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 3
Query:   15 ALLLDFPYCFLIMILSGMLGEMYMGQVLATLTDLSVAPAHYITPSVALFMFVATIIGGNTPLLIPLV---MESVGYSAQVYIDFTAASVYAGE 284
            AL+L  PY ++ +I + ++GEM++   LA L +L   PA   T SVA++ F+ + IGGN PLL+P++    ES GY+ +  + FT  ++Y GE
Sbjct:  419 ALVLPPPYAYMSLIPTYIIGEMWVSVTLAVLVEL--VPAKIKTTSVAVYFFIISNIGGNMPLLVPVLRPAFESWGYTKEAALRFTLLALYPGE 509          
BLAST of mRNA_D-dudresnayi_contig9826.28635.1 vs. uniprot
Match: W5MAW6_LEPOC (D-galactonate transporter-like n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5MAW6_LEPOC)

HSP 1 Score: 58.5 bits (140), Expect = 4.830e-7
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 3
Query:   18 LLLDFPYCFLIMILSGMLGEMYMGQVLATLTDLSVAPAHYITPSVALFMFVATIIGGNTPLLIPLVME 221
            L+L  PYCFL++I + ++GEM++G  LA L +L   P+   T SVA ++F+ T IGGN PLL+PL+ +
Sbjct:  372 LILPPPYCFLLLIPANIIGEMWVGVALAILVEL--VPSAVRTSSVAFYLFIITNIGGNAPLLVPLLAK 437          
BLAST of mRNA_D-dudresnayi_contig9826.28635.1 vs. uniprot
Match: A0A1D2NCK7_ORCCI (Protein spinster 1 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NCK7_ORCCI)

HSP 1 Score: 58.2 bits (139), Expect = 6.470e-7
Identity = 35/93 (37.63%), Postives = 59/93 (63.44%), Query Frame = 3
Query:   15 ALLLDFPYCFLIMILSGMLGEMYMGQVLATLTDLSVAPAHYITPSVALFMFVATIIGGNTPLLIPL---VMESVGYSAQVYIDFTAASVYAGE 284
            ALLL  PY ++ +I + ++GEM++   LA L +L   P++  T SVA++ F+ + IGGN PLL+P+   + +S G++    I +T  ++Y GE
Sbjct:  326 ALLLPTPYAYISLIPNYIIGEMWVSVTLAVLVEL--VPSYIKTTSVAVYFFIISNIGGNMPLLVPVLRPIFQSFGFTQLESIRYTLLTLYPGE 416          
BLAST of mRNA_D-dudresnayi_contig9826.28635.1 vs. uniprot
Match: UPI000A2A6E46 (protein spinster homolog 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A6E46)

HSP 1 Score: 58.2 bits (139), Expect = 6.570e-7
Identity = 33/81 (40.74%), Postives = 53/81 (65.43%), Query Frame = 3
Query:   15 ALLLDFPYCFLIMILSGMLGEMYMGQVLATLTDLSVAPAHYITPSVALFMFVATIIGGNTPLLIPLVMESVGYSAQVYIDF 257
            AL L  P+ F+ +I S ++GEM++G  LA + +L   P+   T SVA ++F+ ++IGGN PLL+P++  S+G    +YI F
Sbjct:  375 ALFLKPPWAFISLIPSNIIGEMWVGVTLAVVVEL--VPSAIRTASVAYYLFIISMIGGNVPLLVPVIKTSLGLRNSLYILF 453          
BLAST of mRNA_D-dudresnayi_contig9826.28635.1 vs. uniprot
Match: A0A6P8HHD8_ACTTE (protein spinster homolog 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HHD8_ACTTE)

HSP 1 Score: 57.8 bits (138), Expect = 8.950e-7
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   15 ALLLDFPYCFLIMILSGMLGEMYMGQVLATLTDLSVAPAHYITPSVALFMFVATIIGGNTPLLIPLVMESVGYSAQVYIDF 257
            AL L  P+ F+ +I S ++GEM++G  LA + +L   P    T SVA ++F+ +IIGGN PLL+P++ + +G    +YI F
Sbjct:  377 ALFLKPPWAFISLIPSNIIGEMWVGVTLAVVVEL--VPVTIRTASVAYYLFIISIIGGNVPLLVPIIKKPLGLRNALYILF 455          
BLAST of mRNA_D-dudresnayi_contig9826.28635.1 vs. uniprot
Match: A0A6P4ZIK1_BRABE (uncharacterized protein LOC109482654 n=7 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZIK1_BRABE)

HSP 1 Score: 57.4 bits (137), Expect = 1.210e-6
Identity = 32/81 (39.51%), Postives = 55/81 (67.90%), Query Frame = 3
Query:   15 ALLLDFPYCFLIMILSGMLGEMYMGQVLATLTDLSVAPAHYITPSVALFMFVATIIGGNTPLLIPLVMESVGYSAQVYIDF 257
            AL LD PY FL++I S ++GEM++G  LA + +L   P++  T +VA+++F++T IGGN+PLL+  + ++  +   + I F
Sbjct:  365 ALYLDPPYAFLVLIPSNIIGEMWVGVTLAVVVEL--VPSYIRTSTVAVYLFISTNIGGNSPLLVTPLKKATNFRTALTILF 443          
BLAST of mRNA_D-dudresnayi_contig9826.28635.1 vs. uniprot
Match: C3Z4W9_BRAFL (MFS domain-containing protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z4W9_BRAFL)

HSP 1 Score: 56.6 bits (135), Expect = 2.180e-6
Identity = 33/89 (37.08%), Postives = 57/89 (64.04%), Query Frame = 3
Query:   15 ALLLDFPYCFLIMILSGMLGEMYMGQVLATLTDLSVAPAHYITPSVALFMFVATIIGGNTPLLIPLVMESVGYSAQVYIDFTAASVYAG 281
            AL L+ PY FL++I S ++GEM++G  LA + +L   P++  T +VA+++F++T IGGN+PLL+  + ++  +   + I F    V  G
Sbjct:  364 ALYLEPPYAFLMLIPSNIIGEMWVGVTLAVVVEL--VPSYIRTSTVAVYLFISTNIGGNSPLLVTPLRKATSFRTALTILFPGLYVAGG 450          
BLAST of mRNA_D-dudresnayi_contig9826.28635.1 vs. uniprot
Match: A0A8K0ACR7_BRALA (SPNS2 protein n=9 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0ACR7_BRALA)

HSP 1 Score: 53.5 bits (127), Expect = 2.590e-5
Identity = 30/67 (44.78%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    9 TAALLLDFPYCFLIMILSGMLGEMYMGQVLATLTDLSVAPAHYITPSVALFMFVATIIGGNTPLLIP 209
            T AL L+ PY FL +I   ++GEM++G  LA + +L   P++  T  VA+++F++T IGGN+PLL+P
Sbjct:  364 TMALYLEPPYAFLALIPCYIIGEMWVGVTLAVVVEL--VPSYIRTSIVAVYLFISTNIGGNSPLLVP 428          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9826.28635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7S3H411_9STRA3.450e-4561.97Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A482S9D4_9ARCH1.100e-2541.26Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
UPI001604F53C1.460e-739.78protein spinster homolog 1 isoform X1 n=4 Tax=Fols... [more]
W5MAW6_LEPOC4.830e-747.06D-galactonate transporter-like n=2 Tax=Lepisosteus... [more]
A0A1D2NCK7_ORCCI6.470e-737.63Protein spinster 1 n=1 Tax=Orchesella cincta TaxID... [more]
UPI000A2A6E466.570e-740.74protein spinster homolog 1 n=1 Tax=Exaiptasia diap... [more]
A0A6P8HHD8_ACTTE8.950e-740.74protein spinster homolog 1-like n=1 Tax=Actinia te... [more]
A0A6P4ZIK1_BRABE1.210e-639.51uncharacterized protein LOC109482654 n=7 Tax=Branc... [more]
C3Z4W9_BRAFL2.180e-637.08MFS domain-containing protein n=2 Tax=Branchiostom... [more]
A0A8K0ACR7_BRALA2.590e-544.78SPNS2 protein n=9 Tax=Branchiostoma lanceolatum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9826contigD-dudresnayi_contig9826:1355..2093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size485
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9826.28635.1prot_D-dudresnayi_contig9826.28635.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9826 1405..2054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.4887953-UTR-D-dudresnayi_contig9826:1354..14041622930940.4887953-UTR-D-dudresnayi_contig9826:1354..1404Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9826 1355..1404 +
1690557973.4443617-UTR-D-dudresnayi_contig9826:1354..14041690557973.4443617-UTR-D-dudresnayi_contig9826:1354..1404Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9826 1355..1404 +
1622930940.5969965-UTR-D-dudresnayi_contig9826:2054..20931622930940.5969965-UTR-D-dudresnayi_contig9826:2054..2093Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9826 2055..2093 +
1690557973.4927967-UTR-D-dudresnayi_contig9826:2054..20931690557973.4927967-UTR-D-dudresnayi_contig9826:2054..2093Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9826 2055..2093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.5248337-CDS-D-dudresnayi_contig9826:1404..14221622930940.5248337-CDS-D-dudresnayi_contig9826:1404..1422Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9826 1405..1422 +
1690557973.454338-CDS-D-dudresnayi_contig9826:1404..14221690557973.454338-CDS-D-dudresnayi_contig9826:1404..1422Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9826 1405..1422 +
1622930940.5506675-CDS-D-dudresnayi_contig9826:1544..17671622930940.5506675-CDS-D-dudresnayi_contig9826:1544..1767Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9826 1545..1767 +
1690557973.464901-CDS-D-dudresnayi_contig9826:1544..17671690557973.464901-CDS-D-dudresnayi_contig9826:1544..1767Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9826 1545..1767 +
1622930940.5727155-CDS-D-dudresnayi_contig9826:1899..20541622930940.5727155-CDS-D-dudresnayi_contig9826:1899..2054Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9826 1900..2054 +
1690557973.4771304-CDS-D-dudresnayi_contig9826:1899..20541690557973.4771304-CDS-D-dudresnayi_contig9826:1899..2054Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9826 1900..2054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9826.28635.1

>prot_D-dudresnayi_contig9826.28635.1 ID=prot_D-dudresnayi_contig9826.28635.1|Name=mRNA_D-dudresnayi_contig9826.28635.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=132bp
MILSGMLGEMYMGQVLATLTDLSVAPAHYITPSVALFMFVATIIGGNTPL
LIPLVMESVGYSAQVYIDFTAASVYAGEQSVPVSEQFSIQHRDARQLQYA
LFYVLGACYLLSGLLFLVSYYQMRNGRKVKA*
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mRNA from alignment at D-dudresnayi_contig9826:1355..2093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9826.28635.1 ID=mRNA_D-dudresnayi_contig9826.28635.1|Name=mRNA_D-dudresnayi_contig9826.28635.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=739bp|location=Sequence derived from alignment at D-dudresnayi_contig9826:1355..2093+ (Desmarestia dudresnayi DdudBR16 monoicous)
CACTAGTCACCGCAGCACTGCTACTGGATTTCCCGTATTGCTTTCTGATT ATGATCCTTAGTGGTATGGTAAGTACAGTGATAGTGTCTCTTATACTGCA TTTTGTGAGTTTTATCGTATATTTCCAGTAGTTTTTATGGAATTAATTGT ATACTCTAACATTATGCTGGTGGGTGTGTATGGTGCCTAGCTAGGGGAGA TGTACATGGGCCAGGTGCTGGCCACCCTCACTGACCTCAGCGTGGCCCCT GCACACTATATCACCCCCTCAGTGGCGTTGTTCATGTTCGTGGCTACGAT TATTGGAGGAAACACGCCGCTGCTGATCCCTCTGGTGATGGAGTCTGTGG GCTACTCTGCTCAAGTGTATATTGACTTTACTGCTGCGAGTGTGTATGCT GGAGAGCAGTCAGGTGAGCTGTTGTACTAGTACTACTGTAGGATATACAG TTATATTAAGTGTATAAACTATGTATATACATGTATATTACATATTATTC TGAGTTTATTATTATGTTATGTTAATTACTACTACTGTACTACAGTGCCG GTATCGGAGCAGTTTAGTATACAACACCGCGATGCACGCCAGCTGCAATA TGCGCTTTTTTATGTCCTCGGAGCTTGCTATCTGCTCTCAGGTCTCCTCT TCCTTGTCAGCTACTATCAAATGCGTAACGGTCGGAAAGTGAAAGCATGA TACCTGCTGACATCCCTATCGGGTCAATTCTAATTGCAT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9826:1355..2093+

>mRNA_D-dudresnayi_contig9826.28635.1 ID=mRNA_D-dudresnayi_contig9826.28635.1|Name=mRNA_D-dudresnayi_contig9826.28635.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at D-dudresnayi_contig9826:1355..2093+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGATCCTTAGTGGTATGATGATCCTTAGTGGTATGCTAGGGGAGATGTA
CATGGGCCAGGTGCTGGCCACCCTCACTGACCTCAGCGTGGCCCCTGCAC
ACTATATCACCCCCTCAGTGGCGTTGTTCATGTTCGTGGCTACGATTATT
GGAGGAAACACGCCGCTGCTGATCCCTCTGGTGATGGAGTCTGTGGGCTA
CTCTGCTCAAGTGTATATTGACTTTACTGCTGCGAGTGTGTATGCTGGAG
AGCAGTCAGCTAGGGGAGATGTACATGGGCCAGGTGCTGGCCACCCTCAC
TGACCTCAGCGTGGCCCCTGCACACTATATCACCCCCTCAGTGGCGTTGT
TCATGTTCGTGGCTACGATTATTGGAGGAAACACGCCGCTGCTGATCCCT
CTGGTGATGGAGTCTGTGGGCTACTCTGCTCAAGTGTATATTGACTTTAC
TGCTGCGAGTGTGTATGCTGGAGAGCAGTCAGTGCCGGTATCGGAGCAGT
TTAGTATACAACACCGCGATGCACGCCAGCTGCAATATGCGCTTTTTTAT
GTCCTCGGAGCTTGCTATCTGCTCTCAGGTCTCCTCTTCCTTGTCAGCTA
CTATCAAATGCGTAACGGTCGGAAAGTGAAAGCATGATGCCGGTATCGGA
GCAGTTTAGTATACAACACCGCGATGCACGCCAGCTGCAATATGCGCTTT
TTTATGTCCTCGGAGCTTGCTATCTGCTCTCAGGTCTCCTCTTCCTTGTC
AGCTACTATCAAATGCGTAACGGTCGGAAAGTGAAAGCATGA
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