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Homology
BLAST of mRNA_D-dudresnayi_contig9821.28630.1 vs. uniprot
Match: A0A6H5K792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K792_9PHAE) HSP 1 Score: 126 bits (316), Expect = 4.280e-31 Identity = 81/139 (58.27%), Postives = 95/139 (68.35%), Query Frame = 1
Query: 4 LQPLVAIKICLRRLGLAHTGFDGEEEVKVDGSPQLKKLVKQVVEHKRVQAVMQELQERVTQRRREKLAESEGRVLPGQGRGAKGRRTGKSSDGRQQGGKKHRSSDGGGRTQD-----------AGSAFVSLSGDMPTEE 387
LQPL +KICLRRLGLAHTG GE EV+V+G +L++LV +VVEHKRV VM+ELQERVT RRREKLAESEGR LPGQGRGA TGK G ++ K GG R AGSAFVSLSG+ P+++
Sbjct: 146 LQPLSVVKICLRRLGLAHTGVQGEAEVEVEGGAELQRLVGKVVEHKRVAVVMEELQERVTMRRREKLAESEGRSLPGQGRGA----TGKQGKGNKKTPAKIHERQGGARKSGVARAAAAAATTAGSAFVSLSGESPSDD 280
BLAST of mRNA_D-dudresnayi_contig9821.28630.1 vs. uniprot
Match: D8LIN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN2_ECTSI) HSP 1 Score: 119 bits (297), Expect = 4.140e-30 Identity = 75/135 (55.56%), Postives = 95/135 (70.37%), Query Frame = 1
Query: 4 LQPLVAIKICLRRLGLAHTGFDGEEEVKVDGSPQLKKLVKQVVEHKRVQAVMQELQERVTQRRREKLAESEGRVLPGQGRGAKGRRTGKSS-------DGRQQGGKKHRSSDGGGRTQDAGSAFVSLSGDMPTEE 387
LQPL +KICLRRLGLAHTG GE EV+V+G +L++LV QVV+H+RV VM ELQERVT RRREKLAESEGR LPGQG+ A+ R+ GK + DGRQ G +K+ ++ FVSLSG+ P+++
Sbjct: 43 LQPLSVVKICLRRLGLAHTGVQGEAEVEVEGGAELQRLVGQVVDHRRVAVVMDELQERVTMRRREKLAESEGRSLPGQGKAAR-RKEGKGNKKNPADIDGRQGGARKNGAARAXXXXXXXXXXFVSLSGESPSDD 176
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 502 |
Cds size | 498 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig9821.28630.1 >prot_D-dudresnayi_contig9821.28630.1 ID=prot_D-dudresnayi_contig9821.28630.1|Name=mRNA_D-dudresnayi_contig9821.28630.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=166bp
GLQPLVAIKICLRRLGLAHTGFDGEEEVKVDGSPQLKKLVKQVVEHKRVQ AVMQELQERVTQRRREKLAESEGRVLPGQGRGAKGRRTGKSSDGRQQGGK KHRSSDGGGRTQDAGSAFVSLSGDMPTEEDWAAASAFRGRGHSSATATSA GNHPRGQRGASVSAAR back to topmRNA from alignment at D-dudresnayi_contig9821:977..8600+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig9821.28630.1 ID=mRNA_D-dudresnayi_contig9821.28630.1|Name=mRNA_D-dudresnayi_contig9821.28630.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=7624bp|location=Sequence derived from alignment at D-dudresnayi_contig9821:977..8600+ (Desmarestia dudresnayi DdudBR16 monoicous) GGTTTGCAGCCGTTGGTCGCCATCAAGATATGCCTCCGTCGATTGGGGTT
AGCGCACACAGGCTTTGACGGTGAGGAAGAGGTGAAGGTGGACGGGAGCC
CTCAACTGAAGAAGCTCGTCAAGCAGGTCGTTGAGCACAAGAGGGTCCAG
GCGGTCATGCAAGAACTGCAAGAGAGGTATGGTATGACAAGTTTGATGTG
GTCGGGATTTTTTCCGTGTTGTTTAAAAAAAAAAAAATCTCCGGCGGATG
GGTAAAGATGTAGATTAAAGCTCCGTAATTTACGTGTCCTTTTTGGTTTG
TAGTGTGTTTGAGCGTGTACAACAGTAGTAGGGTATAATTACGAGCAAAC
TGTCGTATCATAGTTGAGTGTGTGTGCATGCATGCGCCTAACGTACTTAC
CGTGCAGCCGATGTGTTTCGCATTAGGCAAATACAAAGCACACCTTTCAA
TGTGCCCTCACTATTATATTAATATTGTATTTTACAACATTCGCGAAGCA
TTCGAGTGGCGTTAGTTCTTGTCGCTCGGGTGGTCATTTTCCAGCAAGTA
AGGCGGGCCTTCATTCGTTCGCGCGCTGTTTTCCTAAGCAAGATTTTGTT
AATAGTCCACTTATTGCAGACAACCCGCTAGCCTGAATCGCTTCCCCGCC
GCTCGACTGCTATATACTCGTATAGTAGCGCCGTAAGTATGACCACTCGA
CAGCCACTGGCGTTTTCGTTGTGACACGTACGTCTGGCCCGAAAAAACAG
GAACGGTCGCTCCGGGCATTGCATGAGAGGGCCCTGGGGTTAAATTTTAC
GCCTAATGGTGATATTTTTCGTTTTATTCTTGCTCAAAATTGCGATTTGG
TGCTCTTTTATTACGTAGCTTATGACCGCGGAAGTTCGAATGTCTCTCTA
GGATAGAGAAGAATCAGGGCAGACTCTTAAAAACGCTGCTGGACGTCGTA
GGGTCGTACACATGAAAGGACGATTTTTAATGTGAAGACAACAACGATGG
TGTGGCTGATGTTGAACGTATTTTTGTAAAGGACATGATTAGGGGCGGTT
CTGGATACGATCGTAATTCGGTGTGTGTTGGCATGATAGCGGTAGCATTA
CGTAGAAGTTGTGAGTCCGTGATCTACAGCAGAAGAGAAAATACTGTAGG
CGTCTAAACAGGAGTCTAAGCAGTAAGTATCATTTGGAGATAGCGACGTA
CAGTATTGATAGTTGGCCGACGTCAAGGACGGTGGGCGGTGCTATCCAAA
ACGCTAGTTATAGCTACGAGAGCAGCAGCACTCTCGTTATGCCGGCAGCA
GGCCAGGCAGTTGGCCATATATATAAACCTACGTACGAGGTGGTACTATG
GCCTATGAGATTAAGGTGTTCGCCTCTGTTGATTCCCGATGAAAAAAAAA
TGGCACTATTCTGTGCCATCTTCCGTCGCGGAAAACGCGAGAAGAGCGTG
AGTAAGCACAATTCGATGAAAGTCGACGAGGGAAGAAAGCGCTGCACTCT
TTTCGCGATATACAAATGTAGGCACGTACCGTAGTGGGGAGGCCGGGAGA
GTGCCTACTATGTGACCCCGGGATCTGAGTGACGAAGAGAGATGGAGCTA
GAGAAAGAATAGGGCGAAGATGATAAATGGAACGGGGAAAAAAAAAAAAA
AAACTGGGTTGCGGGTGCAGCCCCCCCTAAAGGGGTGAAGTCCCTCAGTA
TGACCCTCACGAAGTACCTAGCTGGGTGCAGGTCATGTTAGCCAGACACA
AAACATTTAACTATAAACGTCTTCGTGCAGATGGCCGTGGTCGTAGATGG
GCCCTACTTCTTTCATAGCGCCTCAGAAAGGTTTTGCTCCAAAAACGAGC
CGCCTTAGCAACATTGTACATTAGGACGGATCCTTCTTGTTTCGTTTTAT
TATATGATTAGTACCAATGTGAGCTGCTCAGCAGTTTCGGGAAATTATAC
CACCAACCCTAACCCTAACGGACACACGAACACACCTATACTAATGGCAA
AGTGGAAACCTCTGTAAAGTTGTTGTATAGTTCCGTCCTACAACAAAAAT
GGTACCCCTATCGCGGCACGACTTATCCTCGACCTCGGAAAAACAAGCAC
ACAACCGCTGTACCTTTTGATCATCTGGGTCCCACTATGAGATGTTTCGA
CGGCCCTTTTCTCGGGCGCCCCGCGGCCGCCTCGCGTGCTTCCTTCCTTC
GGGGTCGCCTTCGGCCGTGCTCCCTCCGCCGTCTCGGGCATCGACCCTCC
CAAAACAAAAAGCGTGCCGGCTCCGAGGGAGACGAGCGAGAAGCGCGCGA
CCGACGTACAGTGGCATCTCCCTCCCCCCCCCCCGAGTTTGTCTTGGGTT
TTGTGTGGTGCGGGAGGATTTGTCCTTGAATGCGTTAAAAGCCGGTTTTT
AAGGCGTGGATCTACAATTGTTCGATTTTGCAACGGAGATGTCCGACTTG
CATCGGACATTCCACAATCGCTTCGGAGATGGCCGACACTTGCTTTTGGA
TCACATGGAGTTTTACAGCAGTAGCAGCAGCAGCAGTCACTAGTGATACA
ATACTTTTAATATCATACTACTACTGCTTTGCTGTTGTTGTAGTATTGTA
GTGGGACCCCAGTGCACTGTTGAGAATAGTGAGTTTCAACTCGGACGGGG
GTTGGCTCTGTATACTACTTCGAAGTATTCTATCTACTACAGTAGTAGTA
GATATCATAGACTATTACTTCTTTTTTTTATCGAATTGTAATTGTTTTCC
AAAGTTGATGTTAACAAATAATTCTCCGCAGCATTAACTCCTTATTCCTG
TCCTCTTAAGCCACTGTTGTCTCCGAAGTCGCGGACGATATGAAACAACA
GTAGGCTTAGCAACGAATGATGAATGATGAATGATGTTGTAGGACGGAAC
TTTACAGGAACTTTACAGAGGTTTTGACTTGCTAGTAGTATACAGTGTGT
TCGTTTGGGTAAGGGTTAGGGTTAGTGGTAGAATTTTCCGAAACTGCTAA
GAAGCCCACGTTGGTACTAATCATATAATAAAACGAACATCCTATAGATC
CGTTCTACAAAAGCGCTAAGGAGGCTCATGTGAAATCAGTGGGGGGCATG
TTGGGGTTTGTGGAGAGGGGATGGAAACCGGTGGGGTTGGTACGTGTATG
TTGGTGTAAAGAGATGTCTACCTTTGTGACCACGGGTCCCCGAGCGATAG
GGCTAACGTGACGGAAATAAAAAATGATAATAATAACCTCCTCCATCTCT
TCGCCTTATTTTTCGCCTCAAGGCTTACTTCCTACCTCCTACCTGTGCAC
GCTTTCCGTGGTCATAACCCCGTCTTCTCGAAGCGGACACCTTGGAGTCT
GTATAGATATTTATATATTTGTGAAACGCCTCCCCCTGTTCCCCTTTAAG
CTGAAGACTTTTATGTAAGATACGGCTAAAACGTAAAGAGCGCCCAAATG
TTGGAGGTGTCTCTATTAGGAGTAGGAACGGTGCTCCGTCTCGAAATTGA
CGCGTTGTCAATGGTCAAGTGACTTTAGGCAAGCAAAAAATGAGTACCCC
CCCCCCACAAGGTGCCGAAGTCCGCCTCACAAGTGGTCCTTCGTAGGATG
CAGCTCACTCTTCATGCGAATCGCCGAACACCTCACGGCGCTTCGCGCTT
GGTGAACGCGATGTCTGCCTGGTCGGTGAAAACCCGACGTGCTCCGTCCC
GGCATAGTTGAGATGCGAGGGTCTATGGTCATACCACTACGGCCATGCAT
AAAATGAGTACACCCTCCCCCCCTCTTCCCTTTTTCTACGGCGACTTTTT
TCCAGGGTAACGCAAAGGAGACGGGAAAAGCTGGCCGAGTCGGAAGGACG
GGTACTTCCCGGGCAGGGTCGGGGTGCGAAGGGTCGACGGACGGGCAAGA
GCTCCGACGGGAGACAACAGGTGCACTTAGTATGCACGCCGCATTTGTCA
CGTCATGTCATGTATAGAGCTTACCAGTATGTGCTTTATGTTATATAATG
TGACCACGGAATTTCGAATATCTTTTTAGGGTATACCATCGAAGAATCAG
TACAGACTCTTGTGAGTGCGCTGCTGGGTTTCGTAGGGTAGAAATGTCGG
TTTTTGATGTCGAGACAACAACAACAACAACAACACCGACAACACCACCA
GCAACAACAAGAGAACAACATGTGTTGTTGCTGGCTTCTTGCGCGATCTC
ACGTTCGTTCAAGAGCGCAAAAAATCGCACGGCCCCTTAGTTTTACCGTT
GCCAACGTAATTGGGTGTTTTAGTTTGGAGACGGTGCTGCGCCGTTCGAT
TTTCTCGTACTGTATCGTGCGTGGTGAGTTTTCATTAGCTACCGCCTTCG
GTCACGGTCAGAGATGTCGACGTGGGTGTACCACCACTATACATACTCGA
ATTATGTGCTGTGCAGTACTTATCCCGAAAATATTACTGGCGCTCCTTGG
AAGCACCACCCATGTAAGATATGAAAAAAACATGTAGAGCGCCCAAATGT
TGGAGGTGTCTCTAGTAGGTAGTAGGAACGGTGCTCCGTCTCGAAAGGGA
TGCGCGGGTCAATATTTATGTGACTTAAGGCAAGCAACAAATGAGTACGC
ACCCCTCCCCCCCCGTCTATCCTTCGCACGTGAACGCTCTGAGGTTGGGA
TTTGCGCCTCGCGGCTGAAAGGTAACGTAATAGCACATAGTGCGTATAAT
AGTTCAGCAGTAACTCCGACACGTAGGTGCTGGTGATGTATTGTTTCAAA
ATCGCGCGTGGAAAGTTCTGGTCACTCGGGGTATTTCTTGTTGTAAAAAC
GGAGGAAGCTACGAGAGGGGCAAGTATGATACTTTGCACGTTGTAGTTTC
GCCAGAAGTGCCCACAATGCACACCCCCACACGATTAACATGGTTGTAGA
TCCAACTTTTTTACAGCTCGTGGCGCCGTATAAGATTGCATGGTGCTTTG
TTTTAAAAAACCGATCCCTATTTGCCCGCTTGCGACTATTTGTAGTGTTC
GACCTCACAGGCCACAAGATATTTGGCCAACTTTTCTTTTGAAGAGTTTT
TGTTGTACACTTTTCCCCAGGGGGTGAGATGTGAATATCCCCCGAGGATG
AATCGGATTCATCCCCGGTACCCAGTAGTAATTGCTATGATCGTGTTTTC
TCACAAAAGCTGATTTTAGCTATTATCAGTAACTTTTTTATCCAAGCTGC
AGTGGTTAACATCCCTCCTTGCAAGTGGTCCGAACGTAACCGTTTTGCCT
TGCTGGCTGCTGCACAGGGAGGAAAGAAACACAGATCGTCGGACGGAGGA
GGAAGAACGCAAGACGCTGGCTCTGCCTTCGTATCCCTGTCGGGAGATAT
GCCGACCGAGGAGGACTGGGCTGCCGCAAGTGCCTTCAGGTACCCCCGCT
CCCTCGGTGCCTCATATACAACAAGAATACCTATCATAAATACAAGTATG
TACTTCGAAGTATACAAGCGCGGTCGACGACGGCGGCCTTGGAAGGCCGC
CGGGCCGACCGACCGACCGACCGACCGATCGACCCAACCCAACCCAACCC
GACCCGACCGACCGACACAACCCAACCCAAACCCAACCAACGCGACCAAC
CGACTGCCCAACCCCAACCCAACGCCTGCGAACGACGGCACCACCGTGCC
TCGGTTGGTATATATAATTTTTATCCTCCGGCGGAATTGTAAAAATGTAC
GAGCTTAGGCGCCCAAATTTCTGAGTCTAGGGCGCATCGTGATTTGCCGA
TTTAACCCTGATCAGCCATTGTAGAATACAGCTTTGCCAGTAAGTACAGC
TCGGGTACTAGGTCGGAGGCCATTGATTGGCGTAGGAGATAACCACCCGA
AGAAGGCAACGTGTAAAAAGTCGACCCCCCCGCTACAACTGTCATCCATG
TGTAAGAAAGTACGCACAAGGTGCCGAAGTCCGCCTCACAAGTGGTTCTT
CGTAGGATGCAGCTCACCCTTCATGCGAGTCGCCGCAACACATCACGGCG
CTTCGCGCTTGGTGCACGCGATGTCTGCCTGGTCGGTGAAAACCCGACGT
GCTCCGTCCCGGCATTGTAGGGGTGCGAGGGTCTATCGTCATACGACTAC
GGCCATGCATGAAAGGAGTACACCCCCTCCGTCCCGTCCCCCGGGAGTGT
GTGAGACTTGCGCAAGCTCGCCCACTGACAAGCTCTTGTTGTATAGGTGG
CGTCGTGCAAGCGCTGTGCGGTTTGAGCGCGTTAGGTGGCTTGTGAAAAA
GTGCACCAGTGACGTTGGAATGTACTACAGTATGCTTTTTATTTTATTCT
TACAATCACTCGTCCGTGAACCGTTTTGTCCGAGAAGTTATTTGAAGAAA
AAAAAAAAGAGCTGAACGACAGCATTCGACCCTTTTAAAACAAAGCACCA
TGGTTGTGTGGCTGCTTTTTTTCTCCGGGTTATCCAAGGAGCTCGCTGGC
ACCAAAATCGTCCTGCCGTTAACGCCGCGTGTTGTTGTTGTTTCTCACGT
TAGCTCATACTCAAAAGATCTCGCCCGTGGTCACAAAATCCCGGCACAAT
AACGCTCCAGAAGGAAGAACAAAGAAAAATAAAGAAAAATATACATATGA
GAAAGAGCAGTGCCCAAGGAGGGCAGGTCCTTTCGCAAGAAAAGCAAATA
ATTTCACAGACTCGAAAGAAACTCATAACAAAATAAGTCAACAATATGAA
GCCAAAAAAAAAGACCAGAAGAAAAGGACGATAATGGGATAAATCCGATC
GTCAGCTACAGCTACAGCTAGGGCTAGAGCTGCAGCCCCCCTTCCTCTTT
AGGTCTCGCCATGGGTATACGCATGGGGTCCCAGGGGGGGGGGGGGGGGC
AAACAGATAGAACAAGAAAAAGACAGAACGACACCAACCCCAGGGAAAAG
CACACCAAGACGCAAGGAGGACAGGAGAGGCAGAGCTATAAAATAAAATA
AAAAAATAAAAATAACAAGAAACAAAAGAGTACTCTTCTTCGTATAATAA
TAACACTACAGTAGTAAATATGTTTTTGTAAATAAATAGTAGTATTATGA
GTGCCCCCCCCCAGAGTACCATGCCTCGCTCAGCCCTTGTCGATTGCGAG
CTGCTCTAAACGTTTTGGTAGCTCGGATCTTTCAGGATTTTAGTTTCATT
ATACAGGAGTATGATTGGTCAACAACGTGGGCTGTTCAGCAGTCCGAAAA
TTCCACCACCGTAACACTCTTTACCCTATAACCCGAACCCTAACGACCAC
ACTGTTGTAGTAATAAAGAGTCAAAACCTTTCTTAAAGACCCGAGCTATC
ATATTATACCAGAGCGCTAAACCTACTATTAATATAATACTGTTTTGTCG
ATTGCTCACCCGTTTTTTTTTTTTTTTTTTTTTCATGGCCGCGGAAGAGG
CCCCTCACCAACGACACCCAACACCGCGGGCCAACATCCCCCAGNNNNNN
NNNNACCGCTCAACACCCCTTATAAATATAATTTTTTTTTTAAAATTACT
CCCCTTTTTTTTTTTTTTTTTTTTTTTTGCATGGCAGAGGAAGAGGCCAC
TCATCAGCGACCGCCACCAGCGCGGGCAACCATCCACGAGGGCAACGCGG
AGCCTCGGTGTCAGCGGCTCGAGG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig9821:977..8600+ >mRNA_D-dudresnayi_contig9821.28630.1 ID=mRNA_D-dudresnayi_contig9821.28630.1|Name=mRNA_D-dudresnayi_contig9821.28630.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at D-dudresnayi_contig9821:977..8600+ (Desmarestia dudresnayi DdudBR16 monoicous) GGTTTGCAGCCGTTGGTCGCCATCAAGATATGCCTCCGTCGATTGGGGTT AGCGCACACAGGCTTTGACGGTGAGGAAGAGGTGAAGGTGGACGGGAGCC CTCAACTGAAGAAGCTCGTCAAGCAGGTCGTTGAGCACAAGAGGGTCCAG GCGGTCATGCAAGAACTGCAAGAGAGGGTTTGCAGCCGTTGGTCGCCATC AAGATATGCCTCCGTCGATTGGGGTTAGCGCACACAGGCTTTGACGGTGA GGAAGAGGTGAAGGTGGACGGGAGCCCTCAACTGAAGAAGCTCGTCAAGC AGGTCGTTGAGCACAAGAGGGTCCAGGCGGTCATGCAAGAACTGCAAGAG AGGGTAACGCAAAGGAGACGGGAAAAGCTGGCCGAGTCGGAAGGACGGGT ACTTCCCGGGCAGGGTCGGGGTGCGAAGGGTCGACGGACGGGCAAGAGCT CCGACGGGAGACAACAGGGTAACGCAAAGGAGACGGGAAAAGCTGGCCGA GTCGGAAGGACGGGTACTTCCCGGGCAGGGTCGGGGTGCGAAGGGTCGAC GGACGGGCAAGAGCTCCGACGGGAGACAACAGGGAGGAAAGAAACACAGA TCGTCGGACGGAGGAGGAAGAACGCAAGACGCTGGCTCTGCCTTCGTATC CCTGTCGGGAGATATGCCGACCGAGGAGGACTGGGCTGCCGCAAGTGCCT TCAGGGAGGAAAGAAACACAGATCGTCGGACGGAGGAGGAAGAACGCAAG ACGCTGGCTCTGCCTTCGTATCCCTGTCGGGAGATATGCCGACCGAGGAG GACTGGGCTGCCGCAAGTGCCTTCAGAGGAAGAGGCCACTCATCAGCGAC CGCCACCAGCGCGGGCAACCATCCACGAGGGCAACGCGGAGCCTCGGTGT CAGCGGCTCGAAGGAAGAGGCCACTCATCAGCGACCGCCACCAGCGCGGG CAACCATCCACGAGGGCAACGCGGAGCCTCGGTGTCAGCGGCTCGA back to top
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