mRNA_D-dudresnayi_contig9818.28621.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9818.28621.1
Unique NamemRNA_D-dudresnayi_contig9818.28621.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9818.28621.1 vs. uniprot
Match: D8LTL8_ECTSI (TRUD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL8_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.950e-8
Identity = 27/53 (50.94%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:  112 ATRSLAVIGIDDGLFLGKSAGFDGTIKRRPSDFIVDEIDTAGKLVEISNFALP 270
            ++ SL VIGI+D +F+G++ GF G IK+  +DF+V+EID++G+LVE S+  LP
Sbjct:    3 SSSSLNVIGIEDDMFMGEAPGFGGCIKQVAADFLVNEIDSSGRLVEASSLTLP 55
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9818.28621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTL8_ECTSI3.950e-850.94TRUD domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9818contigD-dudresnayi_contig9818:5901..7509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D8LTL8
KEGG koko:K06176
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0585@1,KOG2339@2759
EC5.4.99.27
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categorysignal peptide
Exons2
Model size377
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.0026686-CDS-D-dudresnayi_contig9818:5900..60621622930939.0026686-CDS-D-dudresnayi_contig9818:5900..6062Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9818 5901..6062 -
1690557972.8450773-CDS-D-dudresnayi_contig9818:5900..60621690557972.8450773-CDS-D-dudresnayi_contig9818:5900..6062Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9818 5901..6062 -
1622930939.0241477-CDS-D-dudresnayi_contig9818:7296..75091622930939.0241477-CDS-D-dudresnayi_contig9818:7296..7509Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9818 7297..7509 -
1690557972.860563-CDS-D-dudresnayi_contig9818:7296..75091690557972.860563-CDS-D-dudresnayi_contig9818:7296..7509Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9818 7297..7509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9818.28621.1prot_D-dudresnayi_contig9818.28621.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9818 5901..7509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9818.28621.1

>prot_D-dudresnayi_contig9818.28621.1 ID=prot_D-dudresnayi_contig9818.28621.1|Name=mRNA_D-dudresnayi_contig9818.28621.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=125bp
CLLCACVQSAVCSVQHSVRVVVFFLRVGVLTRRGLIMATRSLAVIGIDDG
LFLGKSAGFDGTIKRRPSDFIVDEIDTAGKLVEISNFALPSSSNKPAVPA
RPAPNPPSTASAEEPANSSSDCNPH
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mRNA from alignment at D-dudresnayi_contig9818:5901..7509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9818.28621.1 ID=mRNA_D-dudresnayi_contig9818.28621.1|Name=mRNA_D-dudresnayi_contig9818.28621.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1609bp|location=Sequence derived from alignment at D-dudresnayi_contig9818:5901..7509- (Desmarestia dudresnayi DdudBR16 monoicous)
TGTTTGCTCTGTGCATGTGTGCAGTCTGCAGTATGCAGTGTGCAGCACTC
TGTGCGTGTGGTTGTGTTTTTTTTACGTGTTGGCGTGTTGACACGCCGAG
GTTTGATCATGGCAACACGGTCACTGGCCGTTATAGGCATCGATGATGGA
CTATTCTTGGGAAAATCGGCTGGATTCGATGGGACTATCAAGCGTCGGCC
ATCGGATTTCATTGTGAGCGCTGACCTGCTGCTCATGAAGTTTGAATATA
TTTGCGGCGCAATTTCTCGCGTTCGACGACAGAGAGACAGGACGGCAGAC
GGCAATAATGTGTAATGTGGTCGCACAGTCTGTAGCTGTGCCCTAATGAT
AGTTTAGTTGCAGTTTGTGTGCTGTATACGTAGCCACATTGATCGTGTCA
GCCATTTTTCTTGTGGCGGTAACGTTGTTCGGTTGAACTTGTTTGGAGCT
ACGAATCTACTAGTATATTTAGCGTCGGCGCAATACGGTGGTAGTGGTGG
GCATGTGGGCATACTACTTTTGTCCTGTCCTATGGGATGCGCTTGTTCCA
TTTCCATGTACAGTGTAGTATTTCATTCGAAGACACAGGACGCATGCTGC
GTCGCCGTTCATATCAGTTTGTTGTTGTAACAAGACAGTAGTGTAAGTGC
AGCACAGGCACGCATGATCTCCATAGTGCTGCTGCCACTACACTACCCCA
CCACCGACGTGAATCTCTGATCCAAGGGTGTGCTCACTGTGTCGCCAATA
GCATACACAGTACACCAGTACAGTAGTACAATAGCATACATAGTAGGTAC
GTCTACCTCCAGTGCCTACGAGTAATACTCCAACATTGTACAAGTAGGAG
CACAATATACACCGACGTACCCGTGCTGTCGTGGCAAATGTTGATGTTGT
GTTCGACAGCAGAGTTAAATCGGCAATCGGTAATCAGACGTGGCATGGCC
GTAAAAGTTTGGGGGGTAAAGCTTTGTTTATTCCCATCCCCTGTAAGATT
AAAAAAAAAAGTTGCATGTGCACATTGCCTCTCAGCAGCCAGGTAGCCAG
TCAAGGCCTGTCTACAGAGTGACACCTCAGGCACTACCACTCCTTGGGAT
ACTCTACTATAACACCAATATACTACCGTATGCGCAACGTCCAAAATGAA
CACGGATACCCGTACACTATGAGCACCAATAGCAGGAGCATGCTGACACA
TAAATATATTTACGGCAAACCCGACCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCGCCCCCAAAAAAAAAAAAACCCCCCCCCCCCCCCCCCCCCC
CCTTCTTTCTTCTCTCCCGANNNNNNNNNNAAGGTATAAGGCTGCAGGCG
GTGGCGCCCCCCCCCCCCCCCCGCCCCCATCCGGGTAAGGCCATAAAGAA
AATGGGGTCCCCCCCCCCCCCCCCCTCCTTTGTTTGTTTTGACAAAGGTG
GACGAGATCGACACCGCCGGGAAGCTAGTGGAAATCTCCAACTTTGCGTT
GCCGTCGTCCTCGAACAAGCCTGCCGTGCCTGCACGGCCGGCGCCGAACC
CCCCCTCGACAGCTTCCGCGGAGGAGCCCGCCAACAGTAGTAGTGACTGC
AATCCGCAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9818:5901..7509-

>mRNA_D-dudresnayi_contig9818.28621.1 ID=mRNA_D-dudresnayi_contig9818.28621.1|Name=mRNA_D-dudresnayi_contig9818.28621.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at D-dudresnayi_contig9818:5901..7509- (Desmarestia dudresnayi DdudBR16 monoicous)
TGTTTGCTCTGTGCATGTGTGCAGTCTGCAGTATGCAGTGTGCAGCACTC
TGTGCGTGTGGTTGTGTTTTTTTTACGTGTTGGCGTGTTGACACGCCGAG
GTTTGATCATGGCAACACGGTCACTGGCCGTTATAGGCATCGATGATGGA
CTATTCTTGGGAAAATCGGCTGGATTCGATGGGACTATCAAGCGTCGGCC
ATCGGATTTCATTTGTTTGCTCTGTGCATGTGTGCAGTCTGCAGTATGCA
GTGTGCAGCACTCTGTGCGTGTGGTTGTGTTTTTTTTACGTGTTGGCGTG
TTGACACGCCGAGGTTTGATCATGGCAACACGGTCACTGGCCGTTATAGG
CATCGATGATGGACTATTCTTGGGAAAATCGGCTGGATTCGATGGGACTA
TCAAGCGTCGGCCATCGGATTTCATTGTGGACGAGATCGACACCGCCGGG
AAGCTAGTGGAAATCTCCAACTTTGCGTTGCCGTCGTCCTCGAACAAGCC
TGCCGTGCCTGCACGGCCGGCGCCGAACCCCCCCTCGACAGCTTCCGCGG
AGGAGCCCGCCAACAGTAGTAGTGACTGCAATCCGCACGTGGACGAGATC
GACACCGCCGGGAAGCTAGTGGAAATCTCCAACTTTGCGTTGCCGTCGTC
CTCGAACAAGCCTGCCGTGCCTGCACGGCCGGCGCCGAACCCCCCCTCGA
CAGCTTCCGCGGAGGAGCCCGCCAACAGTAGTAGTGACTGCAATCCGCAC
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