mRNA_D-dudresnayi_contig9818.28620.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9818.28620.1
Unique NamemRNA_D-dudresnayi_contig9818.28620.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9818.28620.1 vs. uniprot
Match: D8LTL8_ECTSI (TRUD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL8_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.410e-11
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:  583 VRIPAGCGPDKEARARVHRAVQETFPFVKTTTERDPDGSVTVVCSQ 720
            V + AG G DK ARARVHRAVQETFPF+KTTTE+ PDGSVTVVC+Q
Sbjct:  200 VWVHAGQGADKAARARVHRAVQETFPFIKTTTEKAPDGSVTVVCTQ 245
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9818.28620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTL8_ECTSI1.410e-1178.26TRUD domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9818contigD-dudresnayi_contig9818:3878..5714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue2.9e-11
Seed eggNOG ortholog2880.D8LTL8
KEGG koko:K06176
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0585@1,KOG2339@2759
EC5.4.99.27
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size721
Cds size720
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.9417772-CDS-D-dudresnayi_contig9818:3877..39281622930938.9417772-CDS-D-dudresnayi_contig9818:3877..3928Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9818 3878..3928 -
1690557972.8219151-CDS-D-dudresnayi_contig9818:3877..39281690557972.8219151-CDS-D-dudresnayi_contig9818:3877..3928Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9818 3878..3928 -
1622930938.9594245-CDS-D-dudresnayi_contig9818:5045..57141622930938.9594245-CDS-D-dudresnayi_contig9818:5045..5714Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9818 5046..5714 -
1690557972.834081-CDS-D-dudresnayi_contig9818:5045..57141690557972.834081-CDS-D-dudresnayi_contig9818:5045..5714Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9818 5046..5714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9818.28620.1prot_D-dudresnayi_contig9818.28620.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9818 3878..5714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9818.28620.1

>prot_D-dudresnayi_contig9818.28620.1 ID=prot_D-dudresnayi_contig9818.28620.1|Name=mRNA_D-dudresnayi_contig9818.28620.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=240bp
MLTAFSCFASGTGDACAAGAGVVAGDGAGANAVAVTGAGSGSGAGSGRVS
AGASSACGPGAGSGSSSASGAGAGAGIAAGAASRGGDNSISIFTPERGEA
NASKKRGIEVVGDNNAIRGGGGEKSAVGTTTTINRLDTALADEKKNAAQE
ETRDNNNSSSICNGGKSKGGRGAGGILARTGSNEGLANGGAGLAVRIPAG
CGPDKEARARVHRAVQETFPFVKTTTERDPDGSVTVVCSQ
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mRNA from alignment at D-dudresnayi_contig9818:3878..5714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9818.28620.1 ID=mRNA_D-dudresnayi_contig9818.28620.1|Name=mRNA_D-dudresnayi_contig9818.28620.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1837bp|location=Sequence derived from alignment at D-dudresnayi_contig9818:3878..5714- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTGACGGCGTTTTCGTGTTTTGCTAGTGGTACTGGTGATGCTTGTGC
TGCTGGTGCTGGTGTTGTTGCTGGTGATGGTGCCGGTGCTAATGCTGTTG
CTGTTACTGGCGCTGGTTCTGGTTCAGGTGCTGGTAGTGGTCGTGTTAGT
GCTGGTGCTAGTTCTGCTTGTGGTCCTGGTGCTGGTTCTGGTTCTAGTTC
TGCTTCTGGTGCTGGTGCCGGTGCTGGCATTGCCGCTGGTGCTGCTAGTA
GAGGTGGCGACAACAGCATTAGTATTTTTACGCCAGAGAGAGGAGAGGCA
AACGCGAGCAAGAAAAGGGGGATTGAGGTTGTGGGGGATAACAACGCCAT
CCGTGGCGGTGGCGGCGAAAAGTCTGCCGTTGGCACAACGACTACTATTA
ATAGGCTCGACACAGCTCTCGCCGACGAGAAAAAAAACGCCGCCCAAGAG
GAAACCCGAGACAACAATAATAGTAGCAGTATTTGTAACGGCGGAAAGTC
GAAGGGGGGGAGAGGCGCCGGTGGTATCCTTGCTCGCACCGGCAGCAATG
AAGGATTAGCCAACGGGGGAGCGGGGTTAGCTGTGCGTATTCCCGCCGGC
TGCGGACCGGACAAGGAGGCTAGGGCGAGGGTGCATCGCGCGGTGCAAGA
GACATTTCCGTTCGTGAAGGTATGACTACATGCTGTTCGCTACTCAATAC
TGCAATGTACTATTAATATTGTGTTCGGGTGGGAGGGATCTCTGGGAGTA
ATTTGGCGTGCATCGTAAAGGGTTTTGTGGTGCACAGCTTTGCAAAAATG
CGTGTGCGTTACTCTGATTGTCTAGCACGGCAGTTGGACAGGGTGGGGTA
TACGTAGCCAAGAAAGAGAAGACGCCCGGCTCTGCCCTGTGGCACGCCCC
TCGTTCCCGTCCATTGTCGGCCGGAGTCCCTACTACTGTGTGTTGTTGTC
AGTGTCAGTGTATGGCACCCATCTTCGAATGGCAGCCGGTTTGAATGTGC
ACTCCCGGGGTTTCCACAGTTTTTTTTCGTGGCTTCTCTTCACCTCGTAA
TGTGGGATCAGGCGGCTCGCGCGACGGTCATCTTCGTCGTCATCACTTGT
AGTCTAAATAGATACTGAAGTTGAAGTACACGTATATATATATATATATA
GTTTGCTGGTATGTTTCAGCCCTAGGCAGCACCTCCCGCTGGGCTCCTTA
ACCAGCCGGGGGGCGGGGGGGGGGGGGGGGCTCGCCTCGCTCGCCTATAT
TAGTCCTGCTAGTTCCGGCTGCACTATCGATATGTCTCAGCATATGAATG
CGAAATGATGTCTGTCTGTCTGGTGCCTGTGACACCAGATACTTGAATAA
GGTAATGGTTTTGGTCACTCAACTGTCCCCGGAGTCCGCGGACTCGGAAC
ACTACTTGAACAAAGTACGGGTCCAAAACGCCTATAAAGACGCGCTTCTT
GGCAGCCAGATTGCGGGATTCGTCTTGCTGTCTTACAGCCTGCGTGGTAA
AAACCTTCAGCGCGCCCGATTTATGTATATTAACACGTGTATCTTTAATA
CTGATATATCCGGACGCTGGAGCAAATACAGACGTTTCAACGTTGGCTGA
GGACGTTTCCCGTACGCTGCTGTGGCTTGCGCTCAATACCTCTTGTGATA
TGGTATATCCCCGTTTTCCTGCTCCTCCTTATCGAACCGCTTTCATTTTA
TCAACTGTAATATTTTCGTTACTTGGTGGTGGTGCTTCGGGGACTGTTCT
TGGAACCGTTCTTGGGACTGTCTATGTTTTGGACAGACTACGACGGAGAG
AGACCCCGACGGCTCGGTGACCGTGGTTTGTTCGCAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9818:3878..5714-

>mRNA_D-dudresnayi_contig9818.28620.1 ID=mRNA_D-dudresnayi_contig9818.28620.1|Name=mRNA_D-dudresnayi_contig9818.28620.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at D-dudresnayi_contig9818:3878..5714- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTGACGGCGTTTTCGTGTTTTGCTAGTGGTACTGGTGATGCTTGTGC
TGCTGGTGCTGGTGTTGTTGCTGGTGATGGTGCCGGTGCTAATGCTGTTG
CTGTTACTGGCGCTGGTTCTGGTTCAGGTGCTGGTAGTGGTCGTGTTAGT
GCTGGTGCTAGTTCTGCTTGTGGTCCTGGTGCTGGTTCTGGTTCTAGTTC
TGCTTCTGGTGCTGGTGCCGGTGCTGGCATTGCCGCTGGTGCTGCTAGTA
GAGGTGGCGACAACAGCATTAGTATTTTTACGCCAGAGAGAGGAGAGGCA
AACGCGAGCAAGAAAAGGGGGATTGAGGTTGTGGGGGATAACAACGCCAT
CCGTGGCGGTGGCGGCGAAAAGTCTGCCGTTGGCACAACGACTACTATTA
ATAGGCTCGACACAGCTCTCGCCGACGAGAAAAAAAACGCCGCCCAAGAG
GAAACCCGAGACAACAATAATAGTAGCAGTATTTGTAACGGCGGAAAGTC
GAAGGGGGGGAGAGGCGCCGGTGGTATCCTTGCTCGCACCGGCAGCAATG
AAGGATTAGCCAACGGGGGAGCGGGGTTAGCTGTGCGTATTCCCGCCGGC
TGCGGACCGGACAAGGAGGCTAGGGCGAGGGTGCATCGCGCGGTGCAAGA
GACATTTCCGTTCGTGAAGATGTTGACGGCGTTTTCGTGTTTTGCTAGTG
GTACTGGTGATGCTTGTGCTGCTGGTGCTGGTGTTGTTGCTGGTGATGGT
GCCGGTGCTAATGCTGTTGCTGTTACTGGCGCTGGTTCTGGTTCAGGTGC
TGGTAGTGGTCGTGTTAGTGCTGGTGCTAGTTCTGCTTGTGGTCCTGGTG
CTGGTTCTGGTTCTAGTTCTGCTTCTGGTGCTGGTGCCGGTGCTGGCATT
GCCGCTGGTGCTGCTAGTAGAGGTGGCGACAACAGCATTAGTATTTTTAC
GCCAGAGAGAGGAGAGGCAAACGCGAGCAAGAAAAGGGGGATTGAGGTTG
TGGGGGATAACAACGCCATCCGTGGCGGTGGCGGCGAAAAGTCTGCCGTT
GGCACAACGACTACTATTAATAGGCTCGACACAGCTCTCGCCGACGAGAA
AAAAAACGCCGCCCAAGAGGAAACCCGAGACAACAATAATAGTAGCAGTA
TTTGTAACGGCGGAAAGTCGAAGGGGGGGAGAGGCGCCGGTGGTATCCTT
GCTCGCACCGGCAGCAATGAAGGATTAGCCAACGGGGGAGCGGGGTTAGC
TGTGCGTATTCCCGCCGGCTGCGGACCGGACAAGGAGGCTAGGGCGAGGG
TGCATCGCGCGGTGCAAGAGACATTTCCGTTCGTGAAGACTACGACGGAG
AGAGACCCCGACGGCTCGGTGACCGTGGTTTGTTCGCAGACTACGACGGA
GAGAGACCCCGACGGCTCGGTGACCGTGGTTTGTTCGCAG
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