mRNA_D-dudresnayi_contig981.28614.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig981.28614.1
Unique NamemRNA_D-dudresnayi_contig981.28614.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig981.28614.1 vs. uniprot
Match: D7FW34_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW34_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 4.660e-82
Identity = 116/127 (91.34%), Postives = 123/127 (96.85%), Query Frame = 1 
Query:    1 SGYYSGTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGVVSMASKGPNTNKSQFFITYTRQPHLNSVYTVFGNVIDGFDVLDVLEKAPVGKKERPVTDILIKDVTIHANPIAE 381
            SGYY GTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRG+VSMASKGPNTNKSQFFITYTRQPHLN+VYTVFG VIDG DVLDV+EKAPVGKKERP+T+I+IK VTIHANP+AE
Sbjct:   34 SGYYDGTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGMVSMASKGPNTNKSQFFITYTRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPLTEIIIKHVTIHANPVAE 160
[Close]
BLAST of mRNA_D-dudresnayi_contig981.28614.1 vs. uniprot
Match: K3X4J3_GLOUD (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X4J3_GLOUD)

HSP 1 Score: 210 bits (535), Expect = 6.480e-66
Identity = 97/126 (76.98%), Postives = 107/126 (84.92%), Query Frame = 1 
Query:    4 GYYSGTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGVVSMASKGPNTNKSQFFITYTRQPHLNSVYTVFGNVIDGFDVLDVLEKAPVGKKERPVTDILIKDVTIHANPIAE 381
            G Y GT+FHRN+KGFMVQGGDP GTGKGGESIWGG F DEFHP N+H+ RG+VSMA+ GPNTNK QFFITY +QPHLN+VYTVFG VIDGFDVLD LEK PV  K RPV DI I+ VTIHANP+AE
Sbjct:   38 GAYDGTRFHRNMKGFMVQGGDPTGTGKGGESIWGGKFDDEFHPQNRHNCRGIVSMANNGPNTNKQQFFITYAKQPHLNNVYTVFGKVIDGFDVLDTLEKVPVDTKYRPVKDITIQSVTIHANPLAE 163
[Close]
BLAST of mRNA_D-dudresnayi_contig981.28614.1 vs. uniprot
Match: A0A8K1CJL0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJL0_PYTOL)

HSP 1 Score: 205 bits (522), Expect = 5.500e-64
Identity = 93/126 (73.81%), Postives = 107/126 (84.92%), Query Frame = 1 
Query:    4 GYYSGTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGVVSMASKGPNTNKSQFFITYTRQPHLNSVYTVFGNVIDGFDVLDVLEKAPVGKKERPVTDILIKDVTIHANPIAE 381
            G Y GTKFHRNI+GFMVQGGDP GTGKGGESIWGG F DEFHP N+H+ RG+VSMA+ GPNTN+ QFFITY +QPHLN+VYT+FG VIDG DVLD +EK+ V  K RP+ DI+I+ VTIHANPIAE
Sbjct:   35 GSYDGTKFHRNIRGFMVQGGDPTGTGKGGESIWGGKFDDEFHPQNRHNCRGIVSMANNGPNTNRQQFFITYAKQPHLNNVYTIFGKVIDGMDVLDAMEKSQVDAKNRPLKDIVIESVTIHANPIAE 160
[Close]
BLAST of mRNA_D-dudresnayi_contig981.28614.1 vs. uniprot
Match: D0MRP3_PHYIT (Peptidyl-prolyl cis-trans isomerase n=21 Tax=Peronosporaceae TaxID=4777 RepID=D0MRP3_PHYIT)

HSP 1 Score: 203 bits (516), Expect = 4.470e-63
Identity = 92/127 (72.44%), Postives = 105/127 (82.68%), Query Frame = 1 
Query:    1 SGYYSGTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGVVSMASKGPNTNKSQFFITYTRQPHLNSVYTVFGNVIDGFDVLDVLEKAPVGKKERPVTDILIKDVTIHANPIAE 381
            SG Y GTKFHRN+KGFMVQGGDP GTGKGG+SIWGG   DEFHP N+H+ RG+VSMA+ GPNTNK QFFITY +QPHLN+VYTVFG +IDG D LD +EK PV  K RP+ +I IK VTIHANPIA+
Sbjct:   34 SGAYDGTKFHRNMKGFMVQGGDPTGTGKGGQSIWGGTIDDEFHPQNRHNCRGIVSMANSGPNTNKQQFFITYGKQPHLNNVYTVFGKIIDGMDTLDAIEKTPVDAKNRPLKEIAIKSVTIHANPIAD 160
[Close]
BLAST of mRNA_D-dudresnayi_contig981.28614.1 vs. uniprot
Match: A0A067DAD1_SAPPC (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067DAD1_SAPPC)

HSP 1 Score: 202 bits (515), Expect = 6.130e-63
Identity = 91/127 (71.65%), Postives = 105/127 (82.68%), Query Frame = 1 
Query:    1 SGYYSGTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGVVSMASKGPNTNKSQFFITYTRQPHLNSVYTVFGNVIDGFDVLDVLEKAPVGKKERPVTDILIKDVTIHANPIAE 381
            S  Y  T FHRN+KGFM+QGGDP GTGKGGESIWGG F DEFHP N+H+ RG+VSMA+ GPNTNK QFFITY +QPHLN+VYTVFG VIDGFDVLD +EK PV  K RP+ +IL+  +TIHANP+AE
Sbjct:   34 SNAYDKTTFHRNMKGFMIQGGDPTGTGKGGESIWGGKFNDEFHPQNRHNARGIVSMANSGPNTNKQQFFITYAKQPHLNNVYTVFGKVIDGFDVLDAMEKTPVDAKSRPLKEILLHSITIHANPLAE 160
[Close]
BLAST of mRNA_D-dudresnayi_contig981.28614.1 vs. uniprot
Match: A0A485L1A0_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485L1A0_9STRA)

HSP 1 Score: 200 bits (509), Expect = 4.980e-62
Identity = 91/124 (73.39%), Postives = 103/124 (83.06%), Query Frame = 1 
Query:   10 YSGTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGVVSMASKGPNTNKSQFFITYTRQPHLNSVYTVFGNVIDGFDVLDVLEKAPVGKKERPVTDILIKDVTIHANPIAE 381
            Y  T FHRN+KGFM+QGGDP GTGKGGESIWGG   DEFHP N+H+ RG+VSMA+ GPNTNK QFFITY +QPHLN+VYTVF  VIDGFDVLD +EKAPV  K RPV DI++  VTIHANP+AE
Sbjct:   37 YDNTLFHRNMKGFMIQGGDPTGTGKGGESIWGGAMNDEFHPQNRHNTRGIVSMANSGPNTNKQQFFITYAKQPHLNNVYTVFAKVIDGFDVLDQMEKAPVDAKHRPVKDIVLHKVTIHANPLAE 160
[Close]
BLAST of mRNA_D-dudresnayi_contig981.28614.1 vs. uniprot
Match: A0A6U3ZYE6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZYE6_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.440e-61
Identity = 94/135 (69.63%), Postives = 112/135 (82.96%), Query Frame = 1 
Query:    1 SGYYSGTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGVVSMASKGPNTNKSQFFITYTRQPHLNSVYTVFGNVIDGFDVLDVLEKAPV--GKKE----RPVTDILIKDVTIHANPIAENG 387
            SGYY GT FHRN++GFM+QGGDP GTGKGGESIWGG F DEFH  N HDRRGVVSMA+KGPNTNKSQFFITY RQPHLN+VYTVFG ++DG+DVL+ +E+ PV  G K+    RP+T  +++ VTIHANP+A+ G
Sbjct:   34 SGYYDGTVFHRNMRGFMIQGGDPKGTGKGGESIWGGTFEDEFHSTNTHDRRGVVSMANKGPNTNKSQFFITYERQPHLNNVYTVFGRILDGWDVLEQMERLPVVGGTKKSVAHRPITPPVVEKVTIHANPLADEG 168
[Close]
BLAST of mRNA_D-dudresnayi_contig981.28614.1 vs. uniprot
Match: A0A024U9Y3_9STRA (Peptidyl-prolyl cis-trans isomerase n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024U9Y3_9STRA)

HSP 1 Score: 197 bits (502), Expect = 6.120e-61
Identity = 90/128 (70.31%), Postives = 105/128 (82.03%), Query Frame = 1 
Query:    1 SGYYSGTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGVVSMASKGPNTNKSQFFITYTRQPHLNSVYTVFGNVIDGFDVLDVLEKAPVGKKERPVTDILIKDVTIHANPIAEN 384
            S  Y  T FHRN+KGFM+QGGDP GTGKGGESIWGG   DEFHP N+H+ RG+VSMA+ G NTNK QFFITY +QPHLN+VYTVFG VIDGFDVLD +EKA V  K RP+ DI++ +VTIHANPIA++
Sbjct:   34 SNSYDNTVFHRNMKGFMIQGGDPTGTGKGGESIWGGAIDDEFHPQNRHNVRGIVSMANSGANTNKQQFFITYAKQPHLNNVYTVFGKVIDGFDVLDAMEKAQVDSKHRPLKDIVLNNVTIHANPIADD 161
[Close]
BLAST of mRNA_D-dudresnayi_contig981.28614.1 vs. uniprot
Match: H3G7R5_PHYRM (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7R5_PHYRM)

HSP 1 Score: 197 bits (500), Expect = 1.270e-60
Identity = 92/130 (70.77%), Postives = 106/130 (81.54%), Query Frame = 1 
Query:    1 SGYYSGTKFHR---NIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGVVSMASKGPNTNKSQFFITYTRQPHLNSVYTVFGNVIDGFDVLDVLEKAPVGKKERPVTDILIKDVTIHANPIAE 381
            SG Y GTKFHR   NI GFMVQGGDP GTGKGG+SIWGG F DEFHP N+H+ RG+VSMA+ GPNTNK QFFITY +QPHLN+VYT+FG VIDG D LD +EK+PV  K RP+ +I +K VTIHANPIA+
Sbjct:   34 SGAYDGTKFHRQVANILGFMVQGGDPTGTGKGGQSIWGGAFGDEFHPQNRHNCRGIVSMANSGPNTNKQQFFITYAKQPHLNNVYTMFGKVIDGMDTLDAMEKSPVDAKNRPLKEIELKSVTIHANPIAD 163
[Close]
BLAST of mRNA_D-dudresnayi_contig981.28614.1 vs. uniprot
Match: A0A7S4EDK7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDK7_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.490e-60
Identity = 90/127 (70.87%), Postives = 104/127 (81.89%), Query Frame = 1 
Query:    1 SGYYSGTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGVVSMASKGPNTNKSQFFITYTRQPHLNSVYTVFGNVIDGFDVLDVLEKAPVGKKERPVTDILIKDVTIHANPIAE 381
            SG Y GT FHR + GFMVQGGDP GTGKGG+SIWGG F DEFHPDN HD RGV+SMA+KGP+TN+SQFF T+  QPHLN  Y+VFG+++DGF+ LD LEK PVGKK RPVT++ I  VTIHANP AE
Sbjct:   34 SGTYDGTPFHRLMPGFMVQGGDPAGTGKGGQSIWGGTFGDEFHPDNAHDSRGVLSMANKGPDTNRSQFFFTFGPQPHLNDKYSVFGHLVDGFETLDALEKLPVGKKHRPVTEVTIDRVTIHANPFAE 160
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig981.28614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW34_ECTSI4.660e-8291.34Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
K3X4J3_GLOUD6.480e-6676.98Peptidyl-prolyl cis-trans isomerase n=2 Tax=Pythia... [more]
A0A8K1CJL0_PYTOL5.500e-6473.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0MRP3_PHYIT4.470e-6372.44Peptidyl-prolyl cis-trans isomerase n=21 Tax=Peron... [more]
A0A067DAD1_SAPPC6.130e-6371.65Peptidyl-prolyl cis-trans isomerase n=3 Tax=Saprol... [more]
A0A485L1A0_9STRA4.980e-6273.39Peptidyl-prolyl cis-trans isomerase n=2 Tax=Aphano... [more]
A0A6U3ZYE6_9STRA1.440e-6169.63Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylu... [more]
A0A024U9Y3_9STRA6.120e-6170.31Peptidyl-prolyl cis-trans isomerase n=6 Tax=Aphano... [more]
H3G7R5_PHYRM1.270e-6070.77Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytop... [more]
A0A7S4EDK7_9STRA2.490e-6070.87Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pelago... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig981contigD-dudresnayi_contig981:24571..29265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.3
Seed ortholog evalue4.6e-55
Seed eggNOG ortholog2880.D7FW34
KEGG koko:K12734
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0884@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-01_003190.1
Exons3
Model size720
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig981.28614.1prot_D-dudresnayi_contig981.28614.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig981 24901..29217 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.1017199-UTR-D-dudresnayi_contig981:24570..249001622930938.1017199-UTR-D-dudresnayi_contig981:24570..24900Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig981 24571..24900 -
1690557972.5034323-UTR-D-dudresnayi_contig981:24570..249001690557972.5034323-UTR-D-dudresnayi_contig981:24570..24900Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig981 24571..24900 -
1622930938.165118-UTR-D-dudresnayi_contig981:29217..292651622930938.165118-UTR-D-dudresnayi_contig981:29217..29265Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig981 29218..29265 -
1690557972.5442154-UTR-D-dudresnayi_contig981:29217..292651690557972.5442154-UTR-D-dudresnayi_contig981:29217..29265Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig981 29218..29265 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.117234-CDS-D-dudresnayi_contig981:24900..250291622930938.117234-CDS-D-dudresnayi_contig981:24900..25029Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig981 24901..25029 -
1690557972.5157776-CDS-D-dudresnayi_contig981:24900..250291690557972.5157776-CDS-D-dudresnayi_contig981:24900..25029Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig981 24901..25029 -
1622930938.1312501-CDS-D-dudresnayi_contig981:25378..254801622930938.1312501-CDS-D-dudresnayi_contig981:25378..25480Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig981 25379..25480 -
1690557972.525732-CDS-D-dudresnayi_contig981:25378..254801690557972.525732-CDS-D-dudresnayi_contig981:25378..25480Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig981 25379..25480 -
1622930938.1506085-CDS-D-dudresnayi_contig981:29106..292171622930938.1506085-CDS-D-dudresnayi_contig981:29106..29217Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig981 29107..29217 -
1690557972.5348473-CDS-D-dudresnayi_contig981:29106..292171690557972.5348473-CDS-D-dudresnayi_contig981:29106..29217Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig981 29107..29217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig981.28614.1

>prot_D-dudresnayi_contig981.28614.1 ID=prot_D-dudresnayi_contig981.28614.1|Name=mRNA_D-dudresnayi_contig981.28614.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=114bp
MVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGVVSMASKGPNTNKS
QFFITYTRQPHLNSVYTVFGNVIDGFDVLDVLEKAPVGKKERPVTDILIK
DVTIHANPIAENG*
back to top

mRNA from alignment at D-dudresnayi_contig981:24571..29265-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig981.28614.1 ID=mRNA_D-dudresnayi_contig981.28614.1|Name=mRNA_D-dudresnayi_contig981.28614.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4695bp|location=Sequence derived from alignment at D-dudresnayi_contig981:24571..29265- (Desmarestia dudresnayi DdudBR16 monoicous)
AGTGGGTACTACAGTGGGACGAAGTTCCACCGAAATATTAAGGGCTTCAT
GGTGCAAGGCGGGGACCCGCTGGGCACGGGGAAGGGCGGTGAGAGCATCT
GGGGAGGGCCTTTCCCGGACGAGTTTCACCCGGACAACAAGCACGATCGA
AGGGGAGTGGTGAGCGCTACTACTGGCAGTTGTATGGTATTCTGGTGCTG
CTGACAATACATGAGCATGATAACAACGGTTGTGTCATGGTGGTAGATAT
GACTATCTCACTTTAATCTACCCTATGAGTATAGTGCGACGTAACACAGC
TCAACAAACAAAGCAAAAACAATAGACTGCAGTGAGTCCCGTTTCACATT
CGTTTTATAATAGCACACCGAAATGAACGCGCACCGCTGATACGAAACAC
CTATACCTTTGTAGTCGATACAGAAGCAAGTTGACAGGTAATGACATACT
ATGACAGTCGCCGCTTTTTGCCCCATTAAATGTTGTCGGGCTCTCTGTGC
TATTAATCTATTAATAGCGTCTCACAAAGGACGTAGGCAGCAACACGGTC
TGCCTCAACCGCTGTAATTGGCATTGCGCAGATTCCTTGATTCCACCCTC
ACGGTTTGCCGTGCTACGGTATCGTATGTGGTATTTTACATATCATCATA
GCGATGTGTGACTAATATCGATATTAGAGCTAAAGCTCTATATTTGAGAC
ACTCGCTAGATATCTCCTATATAGGTCTACAAGGGCGCCTGCCAGGCAGT
GAACTGCCCGACAGGCTCGCAGGATTTAAGGGCGCATGCCAAGGGTGTGA
AGGAAAACCCGCAAGGCAAAATATCGGTTAGGACGTAAATATCGTGCTAA
AAGAGTAAGGAAAAGTACATGTACCCGTAGGTAAAACGCGTTTTCAATAT
TAGAGGCGAGACGAAACCCAAGCGCCCATATAGGAGACATGCTGATGACA
TCCCCAAAACGGTAGGCGAAACTCGTATAAGGTAATATGAAGGAGCATGT
GTACTATATATGTCCACGTGTAACCAATAAGCTTAGCTAACTTAAAGCAT
TCGGGGTGGTCCGCATTCGAAACGGACATTTTTTTTTCTCATCCCGTTTA
TCATCCTCGCCCTATTCCTTCTCCAACTCCATATCTCTGTTCGTAACTCA
GACCCGGGGCCACATAGTAGACGCTCCTCCCCCTCCCCACTACGGTACGT
GCCTATATGTTTATCGCGAGAAGGGTGCAGCACTTTCTTCTCTCGTCGAC
TGTCACTGAATTGTGCTTACTTACGCTCTTCTCGCGCTTTCCGCGACGGA
AGGTGGCCCATAAAAGTGTCATTGCTTTTCACCGGGAATCGAACCCCGAA
CTTCCGCTAACAGAGGTGACAACCCACAATCACATAGACCATAGATAGAT
TCACCCCTGATTAAAAAAAAAACACATCGTCTGTGACTGACACACTCCCA
GGCTAGACAGGGTATTGTGAGAAGGGTGGTTTATAGGCGCCATTGTGAAG
GGAGTTGGCACCAATCATCTAGTAGCTTGGTGTGCACCGCAGACATCAAA
CAAAGCGTGTTCAAACAAATACAACAGGAGGAGTAGTACAGCACACAACA
ACAGTAGAATGACAGATATATACAGATGATACTATTATTATTGTACTTTT
AAAAGTACAACAGTACAGTACAGTAGTATAGTAGTATCAGTAGTACAGGA
CAGTAGTATTCTTCGAAGTGTAGTGGTAGTGGTAGTAGCAATAGTAGTAG
TTAGTAGTAAGTAGAGGATCTATTGATAGTATCATGTGTGATAGTGTCAG
TATTTAATTGTTGTCCCAAAAGAAGCAGCAAATAATACCAAAAATGCAGT
AATAATAAAAAACGAAGCGGGAATTACAAATAATCAGCGGTGTGACGTCG
TTTTCTTCCAAAACAAGAAAAAACGAAGAAATCAATGAACTTTCCGGCTG
CTTTCGGCGCTTGTTTCTTATTTGTTGTATAGTTCAGACAACAAAACCAA
CAATGGTTGTGCCGAACTTTCCGGCTGCATTCGGCGTTTGTTTCTTATTT
TTTGTGTAGTTCGGACGACAAAACCAACAATGGTTGTGCCGGACTTTGTG
GGAGCAGAGATCGAAAATCCTGGTCATATAGACGTCGAATCCTTGTCGCA
CAGCCATTAGGGATCGTCCTATATAGGTCTATAGTGGAGCTCTACGTAGA
GCTCTGTACTTCGTATACACTTATGTATCCGACACTTTTTTTCCCAGCTC
AGCTCGCGGAGCTCATCGCTCGGGGGCTTTTTGAGCAAGCCGTGGTCACT
GGTGGCTTCCCTTCTGCCCCCCGGTACTTCCCTTCTTGCCTTACATGTTT
TTCGCTCACAGGGTTCATTCAGCATTTCCACGGCTTGTCAATTTTCGTCG
ACTTTTGCTTGCCCAAACTCTCTCTCGCCCTTTCCGCCTCGGATTTTTGC
CATAATTGTAAATAATGCTCCACTGTTGTCGAGATTGTTGTTGTTGTTGT
TGTTGTTTCTCACACTAGTTGATCTCAAGAGATCTCGCCCGTGGTCACAA
TGTGAACCCGCAGAACCGCCTAGGGAAGTATGAAGATATAGCCCTATTAC
TAGTAGACCACAGGCGAGTGGGATACATATACATATGATGTTGAGATATT
TCGTATTTACGAGAGTATTATACTTGCTTGAGTAAAGCACAATTCGACGA
AAGAAAGTCGACGAGCTATGATAATGCCGAACCCTATGCGCGACAAAAAC
CTACTGTTAGGCATGTGCCGGGGGGGGAGAAGGGTAAACACCTGTGACCA
CGGCTTGCTCAGACAGGCGCGCTGGGCGATGAGTAGAAGAACTCCTGTAA
GCTGGACTGGGAAGTAAAAGTGCTGGATTTTTTTTTTTTTTTTTTCCGTG
CCATTTATTATCTTCGCTCTGTTCTTTCTCTACAGTAGCTCCATCCCTCT
TCGTAACTCAGATCCGGGGTCACATAGTAGGCGCTCCTCCCTCCTTCCCA
CTACGGTACGTGCCTACATTTTTATCGCGAGAAGAGTGCAACACTTTCTT
CCCTCGTCGAATTTCATCGAATGGTGCTTACTCACGCTCTTGCGTTTTCC
GCGACGGAAGATGGCACAGAAAAGTGCCACCGGGAATCGAACTCCCAACT
TCCGCCAAAGAGAGAGCATCATAGCGTACAGCGCTTATATACCGTAAGAA
GTAGTACTACTGTTCATTTAGTTGATGACTTACCAGGTATGATATTTGTG
CACTTACATTAAAATGGACTGTGCCCCGACGAATGGCGTTTGTATGTAGC
TGTGGCAGGGTCTTGGGGAGATCGTCCCTCGTTTAATAATGCGATTGGTT
TGTGATACTGCAATGTATGTCGCGTTTCGTGCTCGCGCCTTAAACTATCT
AATTCTGCGCCAAGTGTGGTCGTTGCCGTACAATATGACAAACATATGAA
GGGGTTAGAAGCTGGCAATGGGGGTCGCCAGCTGTAACACAGTTGGTAGT
TTGTCATGTCATGAAAAAACGCAACCAGAGCCCGGGACGTAGGGACGTCC
CTAAACAGAACAGGATCCTGGGATTGTGATAGTCCGCGTGGCTGAGGTAT
ACTGCAGTTTGTACTCCGTATAAGGACGTTTCGTGTTCGTGCTTTTGATC
GATACCCAGTTGTGCAGCTAATACAGTACAGTGGAGCCTACTCAACGCGC
AACAGTTTGCTGTCGTTTTGTTTTTGTTTAGTTTTCATCCGTCTCGGCCT
CTTAATCAACCCTCCCTCCCCCGCGCGCGCGTCAGGTATCCATGGCAAGT
AAGGGGCCAAACACAAATAAGAGTCAATTCTTCATTACCTACACGCGGCA
ACCGCATCTTAACAGTGTCTACACGGTGTTCGGGAACGTGAGTCACGCGT
GCTGCACAAGAAACTTTTCCCCTGTTATCGAACGCTTATCTAGTAAGCTC
GTGCTTGCGTGTGATTCTTCAGCCCCGGCACGATGAATTAAGCACACGAT
ACGCGATCGGTGATCGGTTTACGCAGAGCTGGCTCAACTGGCTTAAAATT
GTCATATTCAACATTCATTCATTTTCTGTGATAATGGTCGACACGTTCAC
TTTCGGAGTATCATCGGTGTCATTTTCGTATTTTTTGTGGGGCAGATTTT
CCACTCTGTGCACGTGCGTGTTATTTGCTGTGTGTAAGCATCACTTGGTC
TAATCTCCCACCGCGTGTCCGCCACGTCTGATTCAGGTTATTGATGGATT
TGATGTACTGGACGTGTTGGAGAAAGCACCGGTGGGCAAAAAGGAGCGAC
CTGTGACGGATATCCTCATTAAGGACGTTACAATACACGCCAACCCCATA
GCAGAGAACGGCTGATGAAAGGCCAACCAGGAAAATCTTCGTAAGGGACG
CGGGGGCGGGGCTTATTGGCGAGGCACATGCACGCTTCTCCGGACCTACG
TGAAGAATTGATCAGAACATGCTTCATGTTTTTTATCGTACGGAAATGTT
GGCGTCTGTACTGTAGATACGAGAGAGAGATGCAACGACGGGCGTTTGGT
ATACGACACGGTTAACAACGCAAACGGTGTTCCTTGATAGCAAAATGGGA
CGACCTTGATTATTCCCGAGACACGCAAGAGTTCTCCCCCTTGGGTTTTG
CTATACTGTTGTACACGACACTTATAAGAGTCACGTTCGCACGCG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig981:24571..29265-

>mRNA_D-dudresnayi_contig981.28614.1 ID=mRNA_D-dudresnayi_contig981.28614.1|Name=mRNA_D-dudresnayi_contig981.28614.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at D-dudresnayi_contig981:24571..29265- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGCAAGGCGGGGACCCGCTGGGCACGGGGAAGGGCGGTGAGAGCAT
CTGGGGAGGGCCTTTCCCGGACGAGTTTCACCCGGACAACAAGCACGATC
GAAGGGGAGTGATGGTGCAAGGCGGGGACCCGCTGGGCACGGGGAAGGGC
GGTGAGAGCATCTGGGGAGGGCCTTTCCCGGACGAGTTTCACCCGGACAA
CAAGCACGATCGAAGGGGAGTGGTATCCATGGCAAGTAAGGGGCCAAACA
CAAATAAGAGTCAATTCTTCATTACCTACACGCGGCAACCGCATCTTAAC
AGTGTCTACACGGTGTTCGGGAACGTATCCATGGCAAGTAAGGGGCCAAA
CACAAATAAGAGTCAATTCTTCATTACCTACACGCGGCAACCGCATCTTA
ACAGTGTCTACACGGTGTTCGGGAACGTTATTGATGGATTTGATGTACTG
GACGTGTTGGAGAAAGCACCGGTGGGCAAAAAGGAGCGACCTGTGACGGA
TATCCTCATTAAGGACGTTACAATACACGCCAACCCCATAGCAGAGAACG
GCTGAGTTATTGATGGATTTGATGTACTGGACGTGTTGGAGAAAGCACCG
GTGGGCAAAAAGGAGCGACCTGTGACGGATATCCTCATTAAGGACGTTAC
AATACACGCCAACCCCATAGCAGAGAACGGCTGA
back to top