mRNA_D-dudresnayi_contig9804.28610.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9804.28610.1
Unique NamemRNA_D-dudresnayi_contig9804.28610.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9804.28610.1 vs. uniprot
Match: D8LDU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU5_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 2.480e-38
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:  196 LIFGAVGQEPECTIDELSDAALEQLDMYDKNLYLEPDCVNGHQPLPMHCNYMGLGQECRGCYMTCCGVMQYIQDYAEEYAIWG-EAVVNFCPGAEVDAVENC 498
            L F  V  E EC +  LSDAA EQL MYDK+LYLEPDCVNG  P+P+HCNYMGLGQECRGC+MTC G  +Y+ D+AEE ++WG +A+V+FCP AEV+ +E C
Sbjct:   15 LSFARVKAE-ECIVSSLSDAAQEQLSMYDKDLYLEPDCVNGASPMPVHCNYMGLGQECRGCFMTCDGATRYLDDFAEEISVWGVDAIVHFCPDAEVELLEEC 115
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BLAST of mRNA_D-dudresnayi_contig9804.28610.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.390e-26
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:  214 GQEPECTIDELSDAALEQLDMYDKNLYLEPDCVNGHQPLPMHCNYMGLGQECRGCYMTCCGVMQYIQDYAEEYAIWGE-AVVNFCPGAEVDAVENCHS 504
            G  P C++D L+DA  +QL +YD ++YLE DCVN   PLP+ CNYMGLGQECRGC++TC G + YI D AE    +GE AV+NFCP +EV  +  CH+
Sbjct:  579 GGAPSCSMDSLNDADQQQLALYDNDMYLEDDCVNDSTPLPLGCNYMGLGQECRGCFLTCAGALTYIDDKAEHILEYGEDAVINFCPQSEVSDLAECHN 676
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BLAST of mRNA_D-dudresnayi_contig9804.28610.1 vs. uniprot
Match: A0A6H5KWI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI6_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.980e-15
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:  184 AATGLI--FGAVGQEPECTIDELSDAALEQLDMYDKNLYLEPDCVNGHQPLPMHCNYMGLGQECRGCYMTCCGVMQYIQDYAEEYAIWGE-AVVNFCPGAEVDAVENC 498
            +ATG+   F   G    C+ D L+D   +QL++Y+ ++YLE DCVN   PLP+ CNYMGLGQECRGC++    V              GE AV+NFCP +EV  +  C
Sbjct:  472 SATGMAPCFIESGGAQSCSRDSLNDVDQQQLNLYENDMYLEDDCVNDSTPLPLGCNYMGLGQECRGCFLALAHVK-------------GEDAVINFCPQSEVSDLAEC 566
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BLAST of mRNA_D-dudresnayi_contig9804.28610.1 vs. uniprot
Match: A0A6H5KP24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP24_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.630e-14
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:  274 MYDKNLYLEPDCVNGHQPLPMHCNYMGLGQECRGCYM 384
            MYDK LYLEPDCVNG  P+P+HCNYMGLGQECRGC+M
Sbjct:    1 MYDKGLYLEPDCVNGASPMPVHCNYMGLGQECRGCFM 37
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9804.28610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LDU5_ECTSI2.480e-3863.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDU6_ECTSI2.390e-2655.10N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5KWI6_9PHAE4.980e-1543.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP24_9PHAE1.630e-1483.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9804contigD-dudresnayi_contig9804:3662..7953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_003370.1
Hectar predicted targeting categorysignal peptide
Exons3
Model size1240
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9804.28610.1prot_D-dudresnayi_contig9804.28610.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9804 4392..7803 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930937.5797834-UTR-D-dudresnayi_contig9804:3661..43911622930937.5797834-UTR-D-dudresnayi_contig9804:3661..4391Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9804 3662..4391 -
1690557972.361258-UTR-D-dudresnayi_contig9804:3661..43911690557972.361258-UTR-D-dudresnayi_contig9804:3661..4391Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9804 3662..4391 -
1622930937.7106755-UTR-D-dudresnayi_contig9804:7803..79531622930937.7106755-UTR-D-dudresnayi_contig9804:7803..7953Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9804 7804..7953 -
1690557972.3993092-UTR-D-dudresnayi_contig9804:7803..79531690557972.3993092-UTR-D-dudresnayi_contig9804:7803..7953Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9804 7804..7953 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930937.6089058-CDS-D-dudresnayi_contig9804:4391..44601622930937.6089058-CDS-D-dudresnayi_contig9804:4391..4460Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9804 4392..4460 -
1690557972.3730416-CDS-D-dudresnayi_contig9804:4391..44601690557972.3730416-CDS-D-dudresnayi_contig9804:4391..4460Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9804 4392..4460 -
1622930937.6325014-CDS-D-dudresnayi_contig9804:4861..50911622930937.6325014-CDS-D-dudresnayi_contig9804:4861..5091Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9804 4862..5091 -
1690557972.3818927-CDS-D-dudresnayi_contig9804:4861..50911690557972.3818927-CDS-D-dudresnayi_contig9804:4861..5091Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9804 4862..5091 -
1622930937.6502788-CDS-D-dudresnayi_contig9804:7742..78031622930937.6502788-CDS-D-dudresnayi_contig9804:7742..7803Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9804 7743..7803 -
1690557972.3907852-CDS-D-dudresnayi_contig9804:7742..78031690557972.3907852-CDS-D-dudresnayi_contig9804:7742..7803Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9804 7743..7803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9804.28610.1

>prot_D-dudresnayi_contig9804.28610.1 ID=prot_D-dudresnayi_contig9804.28610.1|Name=mRNA_D-dudresnayi_contig9804.28610.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=120bp
MKTCGIFTFFVAATGLIFGAVGQEPECTIDELSDAALEQLDMYDKNLYLE
PDCVNGHQPLPMHCNYMGLGQECRGCYMTCCGVMQYIQDYAEEYAIWGEA
VVNFCPGAEVDAVENCHSD*
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mRNA from alignment at D-dudresnayi_contig9804:3662..7953-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9804.28610.1 ID=mRNA_D-dudresnayi_contig9804.28610.1|Name=mRNA_D-dudresnayi_contig9804.28610.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4292bp|location=Sequence derived from alignment at D-dudresnayi_contig9804:3662..7953- (Desmarestia dudresnayi DdudBR16 monoicous)
CCCAAATAAACCACACTCCTCACTCGTCCTCGTCTTACACACCAGCCCGT
GCTTTTCGACAAAGCAAAGGAACCAGACACCTATACTCACTACATTTCAA
GAAGCTTCAAGACAGGTTGCCCCGTCACCAAACCCTCAATTCAGAGCACT
ATGAAGACTTGCGGTATTTTCACGTTCTTCGTTGCGGCCACGGGGCTCAT
CTTCGGTGCAGGTACGCTCGGGTTACAGAACGTAGCGGATAACGATAATG
GAGTGATAACGCGCTACGGACGCGTACGTGCACAGGAGAAGCAAACTTGC
AGGAAGTGTTGCTTCTATGGCACCACCAGAATATTACGAGTAGAATAGAT
CTATCGATAGACGATTTCGCCGACATCTCACTCTTTTACCTTTGCGTTGC
GCGCACATGCTGCCCATGTTGACTGCCGTCTGTAATGACTTCGAATGTTT
TCTAGCATGCTGGATTATTGATTTATATGTTCGCCGGGTGGCAAGTACCT
AGCTTGCTTGCGGTATCTCGAGTGCCGATGGCACGTAGTCTTCTTGTGCA
ACCGACTCGATCTGGGAATAACCTTCGAGAACCAAATCGACGAAACTAAT
GTCGCTATATTATAAAATTCTACCTTGTAGAATGTACTGTATTACACTAC
AGTAGTGTATCATACAGTAGTGTTAAGTAACAATAAATAATAGAACGTAG
TAGCGGAGAAGATAGTGGTGCACTTCTAATGGGAACGTAGGGTGGCACAG
TTTCAGATCGATTTAGTTGGTTGGATTTTGTTTCGGAACACAGTAGGACT
GTTTGTAGTGGTAGTAGTTGTAGACTAGTACCATACCACTCGCACTCGTG
TGTATGCTGTAATGCAGGTAAGCCACTTTTGTGACGTACGTGCCTCTCCT
CCTTCTCCGTCCGACCGTTTTCTAAAAACAACGAATACTACTCGTACTCG
TACTACACTCGTACGCACTGTTGTCCAAACCTGTGATGGTAACAACGTTG
ATTCATTTTTCGTTTCAAGTTCATGAACCGTGACGTTCCAGCCTGATTCG
GGGTTCGGGACCCAGGGACCGACGACCATCTCCAACATCACTACTACTAC
TGTATTGTCTGTTGTTGTGTGATGCAGGATATTCCGGTCACTCACGCGTG
TAAATTCGACCACGTCATGAGTTAAGGAGACAATGCATGTTTTGCGTACT
GTTAATAATACTAGTACGTCGTTGTATTATACTCATGATACATCCCCAAG
TATCGTTGACGTTCTGTTCTTCGTTCTGTCTGGTCTTCGTTCTGCCTCCG
TTTGTCCTGTGGCATGTTTAGCTCGCTTCTTTATTGTTTATTCCCATCTT
TTTCTTTCTGTTCTTCTCTCTTATTTTGTTTTATTTTTTTTCTTCTTTTT
TATATGTTTTTGCGATTTGTTTGGTATGTTAACCTGTGACCACGGAGTTT
CGTGTCTTTCTAGGATGGAAGATCCAGTACAGACTCTGAGTACGCTACTG
GATGTCGTAGGGTAGAATGGGCGACTTTTAATGTGAAGACAACAACAGCA
ACATGACGATTTCGAAAAGAAAAAACGGATTACGTTTCTTCTGCACCAGC
AGACAGATATTTTGTTGCTAAAAAAAAAGTAATAAGAATGGTGCTTTTCG
CTGCTTGTTCGCCTATATGTTTAGTTGGTTGTTGTAGTAGAGTAGTATTC
TATTATTATGTTGTTACTACTGTTTACCATAATTTATAATTTGAGTACGA
AATACTTGGCGCGTTGTTTGCTTATGCTTATGTTCAATTATTTGTTGTGA
TGGAATACTCCTACCTATGTTGTTGATGTTTACCATAATTTGTAATATGC
GTACACATCACTGACACTGTTGAGTTTTTGGTTGTGATTTTGCTTCTGTT
TCGTGACTCGTGCCACCGTAAATAAAATTGTACGCATACTTGACACAGTT
GGGTTTTAGGTTTTGGTTGTGATTATGCTTCTGTGCACAAAAATAATAAT
GCTAAATCATCGACTGATGCTTTTCGTTGCTTGTCTGCCTATGTTTAGTT
GTTTGTTGTAGTAGAGTGGTAATCTATTATGTTATTACTGTTTACCATAA
TTTATAGTTTGAGTACGAAATACTTGGCGCGTTGTTTGCTGATGTTCAAT
TATTGGTTGTGATGGAATACCTCCTACCTATGGTGTTGATGTTCACCATA
ATTTATAATTTGTAATAAGTGTACACATAATATCACTGACACTGTTGAGT
TTTTGGTTGTGATTTGATTCTGTTTCGTGACTCATGCCACCGTAAATAAA
ATTGGTGTATTGGTGATACAGATAACGCCGTTGCCTTCGGATCTACAGTA
GTGTGCGTAGTGAGTGTGAATTCGCATGCTCCTTGCACCTGCTGTGACCA
CGGGTTCGAGGGATCGGATTAAAGTGACGACATAATAATAATAATATAAT
AATATATTGTTCGTAGCCTATCACAGACGGCCTTGAGCCCTAATAGTACT
AACCATGACACCCGAAAAACCTGGCACCCGTAATGTGCATATTAATATTA
ACATTTTCGTATAGAGGACCACCATGGAAAAACGGTCAGTTTAATCTGTT
ACGTGCTGAATTCCTCTTGGCTCAGGCAGGACCAACTATTAAACACTTGG
GTATTAACATAACCCAAGGAAATATCACCCGCACAGGAGGTTTGTGGCTC
TTTTCAGCTGGTCTCGTATCATGGGGCAATAACGCAATAACCACAATGTG
GGGTTTCCTGTATGATAGGTAAGACCTCATCAGTCTTGCAGTGAATTAAC
AATTTTGTTCCACCGTTGATCGATCTATTCCTCGTTCAATATTCTCATAT
AATGTGCCGCAGTTGGTCAGGAACCGGAATGCACCATAGATGAGCTGTCT
GACGCCGCCCTGGAGCAGCTTGACATGTACGACAAGAACCTGTACCTGGA
GCCCGACTGTGTCAACGGCCATCAACCTCTGCCGATGCACTGCAACTACA
TGGGCCTCGGCCAGGAATGTCGCGGGTGCTACATGACTTGCTGTGGAGTA
ATGCAGTACATCCAGGACTATGCCGAGGAGTACGCGATATGGGTGAGTTA
CAAGTCAATCGAACACCAGAAAACAGAGGTACAGTACAATAGTATTTGGA
AAGAAATATTGTTCGCGTGACAGGTTGTTGCGAGATGTAATCGTAAAGAA
CCCCCCAATAATACCGGTACTGTGTGTATAGATGTCCGCTATGAAAATCC
AATACACATCTCTCGGGGGTGTGGCGTAGTGTATGCTTTTTGTGCTACAG
AAATACCGCAACCGTATCGACACAATCAATCATCCTACTACTCGTGTAAA
CGAAAATCTCTTGTGACGTGTGAATAGTAAATTGTGTGAGAATCCAAAAA
ATAGCAAACTTGACCCTATTGCCTGAACTTCCCCCAACAAGCCTCAACAC
CGCTCTGTGCTGTCGCTTCAACAAACAATGTGTTTGTTCGCAGGGCGAAG
CAGTCGTCAACTTCTGCCCTGGCGCTGAGGTAGATGCCGTCGAAAATTGC
CACTCGGACTAGAGGATTCGAGTGGTGTACTACGCGAGAGCCAATGCTGT
ACACATGGGAGGGATTTTAATCCAATTGTACAATTATTATCAAGCGCCCC
CCCACCGCCATTGAAAAGGCGATTGTTCGCATATCTCAGAGGACTTCGCC
ACCTTCGTGGTTCGGTGTGTCCGATGGGGCTACAAGTTGTGAAGGGTGCG
GCTGTCGAGTGGATCCTTTTCTTTCCGCAGGCAGGGAATGTGGGGGAGGC
AGAGTTGACCCAATTTGTTTCAAGCGGGACGTATCACGATCAGGATACCG
TGCTGTTTGCGCAGACGTATATATGAGTTTTGACGGCCACACAACATTTG
TTTTTTACGGTCCCATAGTGGGTTACTTTCGAAGGCGATATCTTAGGGGT
CTCACGGGGACCGACCACCCTTATATAGTGGCGTTTTGTATTAGACATGT
ATCCTGTAATGCTAGCAACTTAGATATTTGATTTCCCGGCTAAAGAAGGA
ATGCCAAGTGTATCAAGAGGGTTCTCTTATCCTCAAAGCTCTGTTTGAGG
AAATCTGAAATCGATCTTTTTCGAGATACGGATAAGCAGGGTGGATGTCC
CATGTTTGCGGGACGGATTCCATGAGGTGTTGTATACCGTGTTTTCGACT
ATGTCAGCGTAAAATGTGGTGTGTGTAGGCCTAATCGAATACCCACATCT
CGTCACTCAAATGTGCTGAATACACAAAAAAGAAGGGCCGAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9804:3662..7953-

>mRNA_D-dudresnayi_contig9804.28610.1 ID=mRNA_D-dudresnayi_contig9804.28610.1|Name=mRNA_D-dudresnayi_contig9804.28610.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at D-dudresnayi_contig9804:3662..7953- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAAGACTTGCGGTATTTTCACGTTCTTCGTTGCGGCCACGGGGCTCAT
CTTCGGTGCAGATGAAGACTTGCGGTATTTTCACGTTCTTCGTTGCGGCC
ACGGGGCTCATCTTCGGTGCAGTTGGTCAGGAACCGGAATGCACCATAGA
TGAGCTGTCTGACGCCGCCCTGGAGCAGCTTGACATGTACGACAAGAACC
TGTACCTGGAGCCCGACTGTGTCAACGGCCATCAACCTCTGCCGATGCAC
TGCAACTACATGGGCCTCGGCCAGGAATGTCGCGGGTGCTACATGACTTG
CTGTGGAGTAATGCAGTACATCCAGGACTATGCCGAGGAGTACGCGATAT
GGTTGGTCAGGAACCGGAATGCACCATAGATGAGCTGTCTGACGCCGCCC
TGGAGCAGCTTGACATGTACGACAAGAACCTGTACCTGGAGCCCGACTGT
GTCAACGGCCATCAACCTCTGCCGATGCACTGCAACTACATGGGCCTCGG
CCAGGAATGTCGCGGGTGCTACATGACTTGCTGTGGAGTAATGCAGTACA
TCCAGGACTATGCCGAGGAGTACGCGATATGGGGCGAAGCAGTCGTCAAC
TTCTGCCCTGGCGCTGAGGTAGATGCCGTCGAAAATTGCCACTCGGACTA
GGGCGAAGCAGTCGTCAACTTCTGCCCTGGCGCTGAGGTAGATGCCGTCG
AAAATTGCCACTCGGACTAG
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