mRNA_D-dudresnayi_contig98.28606.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig98.28606.1
Unique NamemRNA_D-dudresnayi_contig98.28606.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig98.28606.1 vs. uniprot
Match: A0A812P900_SYMMI (NPHP3 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812P900_SYMMI)

HSP 1 Score: 54.7 bits (130), Expect = 2.670e-5
Identity = 44/173 (25.43%), Postives = 78/173 (45.09%), Query Frame = 1 
Query:   64 IAGKEHVSYAATLSNLGVLYKEMSKGLKGMERQNYLDRAEEALVEARETRQKLLGETHKDTLYSAIHLASLWKLRDRPQDALVLLRESLLLAESTYGEKDVICAALRNDLGVLCKANGELAEAKIHYTKALEIRSKALGDKHNDTVVSVFNLAELLTAMGQTEEAQALQEALI 582
            + G  H   AA LSN G+   +  + LK +            L E     ++  G  H DT+ +   L+++     + QDA   L     + E  + E     A +  +LGV+ +  G++ +A+I   +++E+R+KA G  H +T+     LA +L  +     A+ L E +I
Sbjct:  848 VYGSNHPDTAAALSNYGIELDKKGEYLKSIR----------ILKETLPVLERWKGTDHLDTVRALEMLSAIQFRAAQFQDARTTLERVSKIRERHFPEDIEGKATVLANLGVMYERQGDITQARILIERSVELRTKAFGPSHKETLSGKRQLAGVLYVLEDISGARKLYEEII 1010
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig98.28606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A812P900_SYMMI2.670e-525.43NPHP3 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig98contigD-dudresnayi_contig98:37344..38348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog2880.D7FKH6
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size582
Cds size582
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig98.28606.1prot_D-dudresnayi_contig98.28606.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig98 37344..38348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930937.048584-CDS-D-dudresnayi_contig98:37343..374581622930937.048584-CDS-D-dudresnayi_contig98:37343..37458Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig98 37344..37458 -
1690557972.14567-CDS-D-dudresnayi_contig98:37343..374581690557972.14567-CDS-D-dudresnayi_contig98:37343..37458Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig98 37344..37458 -
1622930937.0701826-CDS-D-dudresnayi_contig98:37622..377301622930937.0701826-CDS-D-dudresnayi_contig98:37622..37730Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig98 37623..37730 -
1690557972.1754017-CDS-D-dudresnayi_contig98:37622..377301690557972.1754017-CDS-D-dudresnayi_contig98:37622..37730Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig98 37623..37730 -
1622930937.0932643-CDS-D-dudresnayi_contig98:37923..381401622930937.0932643-CDS-D-dudresnayi_contig98:37923..38140Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig98 37924..38140 -
1690557972.193239-CDS-D-dudresnayi_contig98:37923..381401690557972.193239-CDS-D-dudresnayi_contig98:37923..38140Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig98 37924..38140 -
1622930937.1069655-CDS-D-dudresnayi_contig98:38206..383481622930937.1069655-CDS-D-dudresnayi_contig98:38206..38348Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig98 38207..38348 -
1690557972.2127302-CDS-D-dudresnayi_contig98:38206..383481690557972.2127302-CDS-D-dudresnayi_contig98:38206..38348Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig98 38207..38348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig98.28606.1

>prot_D-dudresnayi_contig98.28606.1 ID=prot_D-dudresnayi_contig98.28606.1|Name=mRNA_D-dudresnayi_contig98.28606.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=194bp
MLGEQDKALETYTAALHVYMDIAGKEHVSYAATLSNLGVLYKEMSKGLKG
MERQNYLDRAEEALVEARETRQKLLGETHKDTLYSAIHLASLWKLRDRPQ
DALVLLRESLLLAESTYGEKDVICAALRNDLGVLCKANGELAEAKIHYTK
ALEIRSKALGDKHNDTVVSVFNLAELLTAMGQTEEAQALQEALI
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mRNA from alignment at D-dudresnayi_contig98:37344..38348-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig98.28606.1 ID=mRNA_D-dudresnayi_contig98.28606.1|Name=mRNA_D-dudresnayi_contig98.28606.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1005bp|location=Sequence derived from alignment at D-dudresnayi_contig98:37344..38348- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTAGGTGAACAGGACAAAGCATTGGAAACATATACCGCAGCTTTGCA
TGTGTATATGGACATTGCAGGAAAAGAACATGTATCTTACGCCGCTACAC
TTTCTAACCTTGGTGTGTTATATAAAGAAATGAGTAAAGGACGTGTAATC
AGTAAGAATGATCTTGATGGCAGTGGAGATGGCCACGATGGGCCAGTAGT
GATTCCAGTAAAAGGTATGGAAAGACAGAATTATCTAGATCGAGCTGAGG
AGGCCCTGGTAGAGGCTCGTGAGACTAGACAGAAGCTATTAGGAGAGACA
CACAAAGACACTCTATATTCAGCAATTCATCTAGCGAGTCTATGGAAACT
GCGAGATAGACCACAGGACGCACTGGTACTGCTACGGGAATCATTACTAC
TAGCTGAGAGTACTTATGGAGAAAAGTACGTACATTTAGGGCACATGCAC
TATGTTTGTATGTATCGTATCTATATGCACTATATGTATATATAAGTCTT
ATATTCGTTTTTGTAAATAGTATACCTGGTATTTAATATACTGCATATAC
CATATAAACTCATATCCTTTATATTATATGCGTCATACACTAACACCTAC
TGCTGCAACACCATACAGAGACGTGATCTGTGCGGCGCTGCGCAATGACC
TTGGAGTCCTCTGCAAAGCTAACGGAGAACTGGCCGAAGCTAAGATCCAC
TATACCAAGGCACTGGAGATCCGAAGGTACTTATAGCATATCTATTACAG
TGCTGTATTTATTGCAGTGAATTTAAATGCACTTAATTGTATTCGTACTG
TATATACCAGTATAAGTTATGCATCATCATTTAAATGTAATAAGTATATG
GTATTACGTTACTCACGTTTACACTTTCTGTATACAACAGCAAGGCACTT
GGCGACAAGCATAATGACACAGTTGTGAGTGTGTTTAACCTCGCAGAACT
ACTCACTGCTATGGGACAAACAGAGGAAGCACAGGCACTGCAGGAGGCGC
TCATA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig98:37344..38348-

>mRNA_D-dudresnayi_contig98.28606.1 ID=mRNA_D-dudresnayi_contig98.28606.1|Name=mRNA_D-dudresnayi_contig98.28606.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at D-dudresnayi_contig98:37344..38348- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTAGGTGAACAGGACAAAGCATTGGAAACATATACCGCAGCTTTGCA
TGTGTATATGGACATTGCAGGAAAAGAACATGTATCTTACGCCGCTACAC
TTTCTAACCTTGGTGTGTTATATAAAGAAATGAGTAAAGGACATGTTAGG
TGAACAGGACAAAGCATTGGAAACATATACCGCAGCTTTGCATGTGTATA
TGGACATTGCAGGAAAAGAACATGTATCTTACGCCGCTACACTTTCTAAC
CTTGGTGTGTTATATAAAGAAATGAGTAAAGGACTAAAAGGTATGGAAAG
ACAGAATTATCTAGATCGAGCTGAGGAGGCCCTGGTAGAGGCTCGTGAGA
CTAGACAGAAGCTATTAGGAGAGACACACAAAGACACTCTATATTCAGCA
ATTCATCTAGCGAGTCTATGGAAACTGCGAGATAGACCACAGGACGCACT
GGTACTGCTACGGGAATCATTACTACTAGCTGAGAGTACTTATGGAGAAA
ATAAAAGGTATGGAAAGACAGAATTATCTAGATCGAGCTGAGGAGGCCCT
GGTAGAGGCTCGTGAGACTAGACAGAAGCTATTAGGAGAGACACACAAAG
ACACTCTATATTCAGCAATTCATCTAGCGAGTCTATGGAAACTGCGAGAT
AGACCACAGGACGCACTGGTACTGCTACGGGAATCATTACTACTAGCTGA
GAGTACTTATGGAGAAAAAGACGTGATCTGTGCGGCGCTGCGCAATGACC
TTGGAGTCCTCTGCAAAGCTAACGGAGAACTGGCCGAAGCTAAGATCCAC
TATACCAAGGCACTGGAGATCCGAAGAGACGTGATCTGTGCGGCGCTGCG
CAATGACCTTGGAGTCCTCTGCAAAGCTAACGGAGAACTGGCCGAAGCTA
AGATCCACTATACCAAGGCACTGGAGATCCGAAGCAAGGCACTTGGCGAC
AAGCATAATGACACAGTTGTGAGTGTGTTTAACCTCGCAGAACTACTCAC
TGCTATGGGACAAACAGAGGAAGCACAGGCACTGCAGGAGGCGCTCATAC
AAGGCACTTGGCGACAAGCATAATGACACAGTTGTGAGTGTGTTTAACCT
CGCAGAACTACTCACTGCTATGGGACAAACAGAGGAAGCACAGGCACTGC
AGGAGGCGCTCATA
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