mRNA_D-dudresnayi_contig9794.28598.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9794.28598.1
Unique NamemRNA_D-dudresnayi_contig9794.28598.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9794.28598.1 vs. uniprot
Match: A0A7S3M604_9STRA (Peptidylprolyl isomerase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M604_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.200e-51
Identity = 73/81 (90.12%), Postives = 79/81 (97.53%), Query Frame = 1
Query:    1 KNGDLNVKFWSTKDPGQEPFTFNIGRGQVIKGWDEGVMTMSLGEVAKITCTPDYAYGAGGFPAWGIMPNSTLMFEIEVLKV 243
            K+ DLNVKFWSTKDPGQ+PFTF IG+GQVIKGWDEGVMTMSLGE+A+ITCTPDYAYGAGGFPAWGIMPNSTL+FEIEVLKV
Sbjct:   31 KDRDLNVKFWSTKDPGQQPFTFTIGKGQVIKGWDEGVMTMSLGEIARITCTPDYAYGAGGFPAWGIMPNSTLLFEIEVLKV 111          
BLAST of mRNA_D-dudresnayi_contig9794.28598.1 vs. uniprot
Match: A0A482S9X6_9ARCH (Peptidyl-prolyl cis-trans isomerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9X6_9ARCH)

HSP 1 Score: 154 bits (388), Expect = 1.230e-46
Identity = 69/81 (85.19%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 KNGDLNVKFWSTKDPGQEPFTFNIGRGQVIKGWDEGVMTMSLGEVAKITCTPDYAYGAGGFPAWGIMPNSTLMFEIEVLKV 243
            KN DLNVKFWSTKDPGQ+PFTF IG GQVIKGWDEGVMTM  GE A+I CTPDYAYGAGGFPAWGIMPNS L+FEIEVL V
Sbjct:   52 KNRDLNVKFWSTKDPGQQPFTFTIGLGQVIKGWDEGVMTMKQGEFARIKCTPDYAYGAGGFPAWGIMPNSELVFEIEVLSV 132          
BLAST of mRNA_D-dudresnayi_contig9794.28598.1 vs. uniprot
Match: A0A7K1IMC7_9ACTN (Peptidyl-prolyl cis-trans isomerase n=7 Tax=cellular organisms TaxID=131567 RepID=A0A7K1IMC7_9ACTN)

HSP 1 Score: 150 bits (378), Expect = 2.210e-45
Identity = 64/80 (80.00%), Postives = 74/80 (92.50%), Query Frame = 1
Query:    1 KNGDLNVKFWSTKDPGQEPFTFNIGRGQVIKGWDEGVMTMSLGEVAKITCTPDYAYGAGGFPAWGIMPNSTLMFEIEVLK 240
            KNGDL+ KFWST+DPGQEPF+F IG+GQVIKGWDEGV+ M LGEVA++ C+PDYAYGAGGFPAWGI PNSTL+FEIEVL+
Sbjct:   31 KNGDLSQKFWSTRDPGQEPFSFKIGQGQVIKGWDEGVLGMQLGEVARLRCSPDYAYGAGGFPAWGIQPNSTLVFEIEVLR 110          
BLAST of mRNA_D-dudresnayi_contig9794.28598.1 vs. uniprot
Match: UPI001F5DD5E2 (peptidyl-prolyl cis-trans isomerase FKBP12-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DD5E2)

HSP 1 Score: 150 bits (378), Expect = 2.210e-45
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 KNGDLNVKFWSTKDPGQEPFTFNIGRGQVIKGWDEGVMTMSLGEVAKITCTPDYAYGAGGFPAWGIMPNSTLMFEIEVLK 240
            K+GDL  KFWSTKDPGQEPF FNIG G+VIKGWDEGV++M LGEVA++TCTPDYAYGAGGFPAWGI PNS L+FEIEVL 
Sbjct:   31 KDGDLTKKFWSTKDPGQEPFAFNIGLGKVIKGWDEGVLSMQLGEVARLTCTPDYAYGAGGFPAWGIRPNSVLVFEIEVLS 110          
BLAST of mRNA_D-dudresnayi_contig9794.28598.1 vs. uniprot
Match: B8C2W8_THAPS (Peptidylprolyl isomerase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2W8_THAPS)

HSP 1 Score: 149 bits (375), Expect = 6.330e-45
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    1 KNGDLNVKFWSTKDPGQEPFTFNIGRGQVIKGWDEGVMTMSLGEVAKITCTPDYAYGAGGFPAWGIMPNSTLMFEIEVLKV 243
            KNGDL  KFWSTKDPGQEPF F +G GQVIKGWDEGV+ MSLGEVAKI C+PDYAYG GGFPAWGIMPNS L+FEIEVL +
Sbjct:   31 KNGDLKKKFWSTKDPGQEPFKFAVGMGQVIKGWDEGVIGMSLGEVAKIHCSPDYAYGPGGFPAWGIMPNSELIFEIEVLSI 111          
BLAST of mRNA_D-dudresnayi_contig9794.28598.1 vs. uniprot
Match: A0A251SCH5_HELAN (Peptidylprolyl isomerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SCH5_HELAN)

HSP 1 Score: 148 bits (374), Expect = 8.980e-45
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    1 KNGDLNVKFWSTKDPGQEPFTFNIGRGQVIKGWDEGVMTMSLGEVAKITCTPDYAYGAGGFPAWGIMPNSTLMFEIEVLK 240
            KNGDL+ KFWSTKD GQ+PFTF +G GQVIKGWDEGV+ M LGEVA++TCTPDYAYGAGGFPAWGI P+STL+FEIEVL+
Sbjct:   31 KNGDLSQKFWSTKDEGQQPFTFKLGLGQVIKGWDEGVLGMQLGEVARLTCTPDYAYGAGGFPAWGIQPDSTLVFEIEVLR 110          
BLAST of mRNA_D-dudresnayi_contig9794.28598.1 vs. uniprot
Match: A0A484M128_9ASTE (Peptidylprolyl isomerase n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484M128_9ASTE)

HSP 1 Score: 148 bits (373), Expect = 1.280e-44
Identity = 63/79 (79.75%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 KNGDLNVKFWSTKDPGQEPFTFNIGRGQVIKGWDEGVMTMSLGEVAKITCTPDYAYGAGGFPAWGIMPNSTLMFEIEVL 237
            KNGDL+ KFWSTKDPGQ+PF+F IG+G VIKGWDEGV+TM +GEVA++TCTPDY YGAGGFPAWGI PNS L FEIEVL
Sbjct:   31 KNGDLSQKFWSTKDPGQQPFSFKIGQGSVIKGWDEGVLTMQVGEVARLTCTPDYGYGAGGFPAWGIQPNSVLAFEIEVL 109          
BLAST of mRNA_D-dudresnayi_contig9794.28598.1 vs. uniprot
Match: G4ZGP8_PHYSP (Peptidylprolyl isomerase n=10 Tax=Phytophthora TaxID=4783 RepID=G4ZGP8_PHYSP)

HSP 1 Score: 147 bits (372), Expect = 1.810e-44
Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 KNGDLNVKFWSTKDPGQEPFTFNIGRGQVIKGWDEGVMTMSLGEVAKITCTPDYAYGAGGFPAWGIMPNSTLMFEIEVLKV 243
            K+ DL  KFWSTKDPGQ PFTF++G GQVIKGWDEGV+ M LGE A++TCTPDYAYGAGGFPAWGI PNSTL+FEIEVLK+
Sbjct:   31 KDRDLQQKFWSTKDPGQTPFTFSVGLGQVIKGWDEGVLGMKLGETARLTCTPDYAYGAGGFPAWGIQPNSTLIFEIEVLKL 111          
BLAST of mRNA_D-dudresnayi_contig9794.28598.1 vs. uniprot
Match: A0A0K9RY95_SPIOL (Peptidylprolyl isomerase n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RY95_SPIOL)

HSP 1 Score: 147 bits (372), Expect = 1.810e-44
Identity = 62/80 (77.50%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 KNGDLNVKFWSTKDPGQEPFTFNIGRGQVIKGWDEGVMTMSLGEVAKITCTPDYAYGAGGFPAWGIMPNSTLMFEIEVLK 240
            KN DL+ KFWSTKDPGQ+PF+FN+G+G VIKGWDEGV+ M +GEVA++TCTPDYAYG GGFPAWGI PNSTL+FEIEVL 
Sbjct:   31 KNRDLSQKFWSTKDPGQQPFSFNVGKGNVIKGWDEGVLGMQVGEVARLTCTPDYAYGTGGFPAWGIQPNSTLVFEIEVLN 110          
BLAST of mRNA_D-dudresnayi_contig9794.28598.1 vs. uniprot
Match: A0A7J7LNC2_9MAGN (Peptidylprolyl isomerase n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LNC2_9MAGN)

HSP 1 Score: 147 bits (370), Expect = 3.660e-44
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 1
Query:    1 KNGDLNVKFWSTKDPGQEPFTFNIGRGQVIKGWDEGVMTMSLGEVAKITCTPDYAYGAGGFPAWGIMPNSTLMFEIEVLKV 243
            KNGDL+ KFWSTKDPGQ+PFTFNIG G VIKGWDEGVM M LGEVA++ C+PDY YG GGFPAWGI PNS L+FEIEVL +
Sbjct:   31 KNGDLSQKFWSTKDPGQQPFTFNIGLGSVIKGWDEGVMGMQLGEVARLQCSPDYGYGPGGFPAWGIQPNSVLVFEIEVLSI 111          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9794.28598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3M604_9STRA1.200e-5190.12Peptidylprolyl isomerase n=1 Tax=Spumella elongata... [more]
A0A482S9X6_9ARCH1.230e-4685.19Peptidyl-prolyl cis-trans isomerase n=1 Tax=archae... [more]
A0A7K1IMC7_9ACTN2.210e-4580.00Peptidyl-prolyl cis-trans isomerase n=7 Tax=cellul... [more]
UPI001F5DD5E22.210e-4581.25peptidyl-prolyl cis-trans isomerase FKBP12-like n=... [more]
B8C2W8_THAPS6.330e-4581.48Peptidylprolyl isomerase n=1 Tax=Thalassiosira pse... [more]
A0A251SCH5_HELAN8.980e-4580.00Peptidylprolyl isomerase n=1 Tax=Helianthus annuus... [more]
A0A484M128_9ASTE1.280e-4479.75Peptidylprolyl isomerase n=3 Tax=Cuscuta sect. Cle... [more]
G4ZGP8_PHYSP1.810e-4479.01Peptidylprolyl isomerase n=10 Tax=Phytophthora Tax... [more]
A0A0K9RY95_SPIOL1.810e-4477.50Peptidylprolyl isomerase n=1 Tax=Spinacia oleracea... [more]
A0A7J7LNC2_9MAGN3.660e-4477.78Peptidylprolyl isomerase n=1 Tax=Kingdonia uniflor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9794contigD-dudresnayi_contig9794:1..316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score152.5
Seed ortholog evalue8.4e-35
Seed eggNOG ortholog4533.OB02G40320.1
Preferred nameFKBP12
KEGG koko:K01802
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.Peptidyl-prolyl cis-trans isomerase
EggNOG OGs37VEG@33090,3GINI@35493,3II48@38820,3KZZV@4447,COG0545@1,KOG0544@2759
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-19_001050.1
EC5.2.1.8
COG Functional cat.O
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.3387864-CDS-D-dudresnayi_contig9794:0..1201622930936.3387864-CDS-D-dudresnayi_contig9794:0..120Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9794 1..120 +
1690557971.840725-CDS-D-dudresnayi_contig9794:0..1201690557971.840725-CDS-D-dudresnayi_contig9794:0..120Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9794 1..120 +
1622930936.356669-CDS-D-dudresnayi_contig9794:190..3161622930936.356669-CDS-D-dudresnayi_contig9794:190..316Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9794 191..316 +
1690557971.8549392-CDS-D-dudresnayi_contig9794:190..3161690557971.8549392-CDS-D-dudresnayi_contig9794:190..316Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9794 191..316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9794.28598.1prot_D-dudresnayi_contig9794.28598.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9794 1..316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9794.28598.1

>prot_D-dudresnayi_contig9794.28598.1 ID=prot_D-dudresnayi_contig9794.28598.1|Name=mRNA_D-dudresnayi_contig9794.28598.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=82bp
KNGDLNVKFWSTKDPGQEPFTFNIGRGQVIKGWDEGVMTMSLGEVAKITC
TPDYAYGAGGFPAWGIMPNSTLMFEIEVLKV*
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mRNA from alignment at D-dudresnayi_contig9794:1..316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9794.28598.1 ID=mRNA_D-dudresnayi_contig9794.28598.1|Name=mRNA_D-dudresnayi_contig9794.28598.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=316bp|location=Sequence derived from alignment at D-dudresnayi_contig9794:1..316+ (Desmarestia dudresnayi DdudBR16 monoicous)
AAGAACGGTGATCTAAACGTTAAGTTTTGGAGCACTAAGGATCCTGGACA AGAGCCTTTCACCTTCAATATCGGAAGAGGTCAGGTTATTAAAGGATGGG ATGAAGGTGTTATGACTATGGTAAATATTTATATTATTATATATTCATTA TGATTCAATTTATCACAAATATCTTGATTTTGATGCATAGTCTCTTGGCG AAGTTGCCAAAATCACCTGCACCCCGGACTATGCTTATGGAGCCGGTGGC TTTCCTGCTTGGGGAATCATGCCAAACTCAACTTTAATGTTTGAGATCGA AGTTCTTAAAGTTTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9794:1..316+

>mRNA_D-dudresnayi_contig9794.28598.1 ID=mRNA_D-dudresnayi_contig9794.28598.1|Name=mRNA_D-dudresnayi_contig9794.28598.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at D-dudresnayi_contig9794:1..316+ (Desmarestia dudresnayi DdudBR16 monoicous)
AAGAACGGTGATCTAAACGTTAAGTTTTGGAGCACTAAGGATCCTGGACA
AGAGCCTTTCACCTTCAATATCGGAAGAGGTCAGGTTATTAAAGGATGGG
ATGAAGGTGTTATGACTATGAAGAACGGTGATCTAAACGTTAAGTTTTGG
AGCACTAAGGATCCTGGACAAGAGCCTTTCACCTTCAATATCGGAAGAGG
TCAGGTTATTAAAGGATGGGATGAAGGTGTTATGACTATGTCTCTTGGCG
AAGTTGCCAAAATCACCTGCACCCCGGACTATGCTTATGGAGCCGGTGGC
TTTCCTGCTTGGGGAATCATGCCAAACTCAACTTTAATGTTTGAGATCGA
AGTTCTTAAAGTTTAATCTCTTGGCGAAGTTGCCAAAATCACCTGCACCC
CGGACTATGCTTATGGAGCCGGTGGCTTTCCTGCTTGGGGAATCATGCCA
AACTCAACTTTAATGTTTGAGATCGAAGTTCTTAAAGTTTAA
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