mRNA_D-dudresnayi_contig9788.28593.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9788.28593.1
Unique NamemRNA_D-dudresnayi_contig9788.28593.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9788.28593.1 vs. uniprot
Match: A0A2D4BMS5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMS5_PYTIN)

HSP 1 Score: 88.2 bits (217), Expect = 2.850e-21
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 MASDTPSSVAPPVIPDQHQGSKRNFGGEVDIEEAIDRSGCSLDYYLLEECLGEHDRDWRKCQNQVLQV 204
            MA   P+ V P V+   HQGSK +FG ++DI++ I++ GCS DYY LEECLGE+DRDW KCQ  V Q+
Sbjct:    1 MADKNPTMVPPAVVAGLHQGSKSDFGEDLDIDDMIEKMGCSKDYYALEECLGEYDRDWTKCQTYVKQL 68          
BLAST of mRNA_D-dudresnayi_contig9788.28593.1 vs. uniprot
Match: A0A8K1CK47_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK47_PYTOL)

HSP 1 Score: 86.7 bits (213), Expect = 7.890e-21
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   22 SVAPPVIPDQHQGSKRNFGGEVDIEEAIDRSGCSLDYYLLEECLGEHDRDWRKCQNQV 195
            S  PPVIP  H GS+ +FG +VDI+E I++ GCS DYY LEECLGE+DRDW KCQ +V
Sbjct:    6 SFTPPVIPGLHAGSQSDFGSDVDIDEMIEKMGCSKDYYKLEECLGEYDRDWTKCQVEV 63          
BLAST of mRNA_D-dudresnayi_contig9788.28593.1 vs. uniprot
Match: K3X4R7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4R7_GLOUD)

HSP 1 Score: 82.0 bits (201), Expect = 6.580e-19
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   22 SVAPPVIPDQHQGSKRNFGGEVDIEEAIDRSGCSLDYYLLEECLGEHDRDWRKCQNQVLQV 204
            +  PPV+P  H GS+ +FG ++DI+  I++ GC+ DYY LEECLGE+DR+W KCQ QV Q+
Sbjct:   18 AFVPPVVPGLHAGSQSDFGDDIDIDAMIEKMGCAQDYYKLEECLGEYDRNWTKCQAQVKQL 78          
BLAST of mRNA_D-dudresnayi_contig9788.28593.1 vs. uniprot
Match: A0A3M6VQQ0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQQ0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.700e-16
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 MASDTPSSVAPPVIPDQHQGSKRNFGGEVDIEEAIDRSGCSLDYYLLEECLGEHDRDWRKCQNQV 195
            M+ + P+   P  IP  H GSK +F  ++D+EE I+R+ C  DYY LEECL ++DRDWRKCQ +V
Sbjct:    1 MSDELPTPPVP--IPGLHAGSKSDFREDLDVEELIERNRCHEDYYKLEECLADYDRDWRKCQEEV 63          
BLAST of mRNA_D-dudresnayi_contig9788.28593.1 vs. uniprot
Match: A0A3F2RVE9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVE9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.280e-15
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   28 APPVIPDQHQGSKRNFGGEVDIEEAIDRSGCSLDYYLLEECLGEHDRDWRKCQNQV 195
            AP  I   H GSK +FG ++D++E I+R+ C  DYY LE+CL ++DRDWRKCQ QV
Sbjct:    9 APVPIAGLHAGSKSDFGEDLDVDELIERNRCHEDYYKLEDCLADYDRDWRKCQEQV 64          
BLAST of mRNA_D-dudresnayi_contig9788.28593.1 vs. uniprot
Match: M4BWI2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWI2_HYAAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.310e-15
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   19 SSVAPPVIP--DQHQGSKRNFGGEVDIEEAIDRSGCSLDYYLLEECLGEHDRDWRKCQNQV 195
            S+ + P +P    H GSK NFG ++D++E I+R+ C  DYY LE+CL + DRDWRKCQ QV
Sbjct:    3 SAASKPPVPVLGLHAGSKSNFGEDLDVDELIERNRCHEDYYKLEDCLADFDRDWRKCQKQV 63          
BLAST of mRNA_D-dudresnayi_contig9788.28593.1 vs. uniprot
Match: A0A662X263_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X263_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.770e-15
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   25 VAPPVIPDQHQGSKRNFGGEVDIEEAIDRSGCSLDYYLLEECLGEHDRDWRKCQNQVLQV 204
             AP  +   H GSK +FG ++D++E I+R+ C  DYY LE+CL ++DRDW KCQ QV Q+
Sbjct:    6 TAPTPLAGLHAGSKSDFGEDLDVDELIERNRCHKDYYKLEDCLADYDRDWTKCQQQVKQL 65          
BLAST of mRNA_D-dudresnayi_contig9788.28593.1 vs. uniprot
Match: A0A5D6XP60_9STRA (HECT domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP60_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.000e-15
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   31 PPVIPDQHQGSKRNFGGEVDIEEAIDRSGCSLDYYLLEECLGEHDRDWRKCQNQVLQV 204
            P V+   H GSK +FG ++DI++ I+R GC+ DYY LE+CLGE DRDW KCQ QV Q+
Sbjct:  818 PQVVAGLHAGSKSDFGADLDIDDMIERMGCAKDYYKLEDCLGEFDRDWTKCQAQVKQL 875          
BLAST of mRNA_D-dudresnayi_contig9788.28593.1 vs. uniprot
Match: H3HBJ3_PHYRM (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=H3HBJ3_PHYRM)

HSP 1 Score: 71.6 bits (174), Expect = 6.650e-15
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   31 PPV-IPDQHQGSKRNFGGEVDIEEAIDRSGCSLDYYLLEECLGEHDRDWRKCQNQV 195
            PPV +   H GSK +FG ++D++E I+R+ C  DYY LE+CL + DRDWRKCQ QV
Sbjct:    8 PPVPVAGLHAGSKSDFGEDLDVDELIERNRCHEDYYKLEDCLADFDRDWRKCQEQV 63          
BLAST of mRNA_D-dudresnayi_contig9788.28593.1 vs. uniprot
Match: G5AI08_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5AI08_PHYSP)

HSP 1 Score: 71.2 bits (173), Expect = 1.070e-14
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   28 APPVIPDQHQGSKRNFGGEVDIEEAIDRSGCSLDYYLLEECLGEHDRDWRKCQNQVLQV 204
            AP  +   H GSK +FG ++D++E I+R+ C  DYY LE+CL + DRDW KCQ QV Q+
Sbjct:    8 APVPVAGLHAGSKSDFGEDLDVDELIERNRCHEDYYKLEDCLADFDRDWTKCQQQVKQL 66          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9788.28593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4BMS5_PYTIN2.850e-2155.88Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1CK47_PYTOL7.890e-2163.79Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X4R7_GLOUD6.580e-1954.10Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3M6VQQ0_9STRA6.700e-1650.77Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A3F2RVE9_9STRA1.280e-1555.36Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
M4BWI2_HYAAE1.310e-1552.46Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A662X263_9STRA1.770e-1550.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A5D6XP60_9STRA2.000e-1556.90HECT domain-containing protein n=1 Tax=Pythium bra... [more]
H3HBJ3_PHYRM6.650e-1555.36Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
G5AI08_PHYSP1.070e-1450.85Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9788contigD-dudresnayi_contig9788:4940..5143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue6.1e-15
Seed eggNOG ortholog36331.EPrPI00000016298
KEGG koko:K18177
KEGG Pathwayko04714,map04714
EggNOG free text desc.Coiled-coil-helix-coiled-coil-helix domain containing 8. Source PGD
EggNOG OGs1MI3S@121069,2E4K7@1,2SBFX@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.8386967-CDS-D-dudresnayi_contig9788:4939..51431622930935.8386967-CDS-D-dudresnayi_contig9788:4939..5143Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9788 4940..5143 -
1690557971.642558-CDS-D-dudresnayi_contig9788:4939..51431690557971.642558-CDS-D-dudresnayi_contig9788:4939..5143Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9788 4940..5143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9788.28593.1prot_D-dudresnayi_contig9788.28593.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9788 4940..5143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9788.28593.1

>prot_D-dudresnayi_contig9788.28593.1 ID=prot_D-dudresnayi_contig9788.28593.1|Name=mRNA_D-dudresnayi_contig9788.28593.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=68bp
MASDTPSSVAPPVIPDQHQGSKRNFGGEVDIEEAIDRSGCSLDYYLLEEC
LGEHDRDWRKCQNQVLQV
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mRNA from alignment at D-dudresnayi_contig9788:4940..5143-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9788.28593.1 ID=mRNA_D-dudresnayi_contig9788.28593.1|Name=mRNA_D-dudresnayi_contig9788.28593.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at D-dudresnayi_contig9788:4940..5143- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCTTCGGACACACCGTCTTCTGTAGCACCTCCGGTCATTCCCGATCA GCATCAAGGTTCGAAGAGAAACTTTGGCGGGGAGGTGGACATCGAGGAAG CCATCGATCGGTCAGGGTGCTCGTTGGACTACTATCTATTGGAGGAGTGC TTGGGCGAGCACGATCGAGACTGGCGCAAGTGCCAGAACCAGGTACTACA AGTA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9788:4940..5143-

>mRNA_D-dudresnayi_contig9788.28593.1 ID=mRNA_D-dudresnayi_contig9788.28593.1|Name=mRNA_D-dudresnayi_contig9788.28593.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at D-dudresnayi_contig9788:4940..5143- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCTTCGGACACACCGTCTTCTGTAGCACCTCCGGTCATTCCCGATCA
GCATCAAGGTTCGAAGAGAAACTTTGGCGGGGAGGTGGACATCGAGGAAG
CCATCGATCGGTCAGGGTGCTCGTTGGACTACTATCTATTGGAGGAGTGC
TTGGGCGAGCACGATCGAGACTGGCGCAAGTGCCAGAACCAGGTACTACA
AGTAATGGCTTCGGACACACCGTCTTCTGTAGCACCTCCGGTCATTCCCG
ATCAGCATCAAGGTTCGAAGAGAAACTTTGGCGGGGAGGTGGACATCGAG
GAAGCCATCGATCGGTCAGGGTGCTCGTTGGACTACTATCTATTGGAGGA
GTGCTTGGGCGAGCACGATCGAGACTGGCGCAAGTGCCAGAACCAGGTAC
TACAAGTA
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