mRNA_D-dudresnayi_contig9738.28525.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9738.28525.1
Unique NamemRNA_D-dudresnayi_contig9738.28525.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9738.28525.1 vs. uniprot
Match: A0A482SQU5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQU5_9ARCH)

HSP 1 Score: 127 bits (319), Expect = 5.210e-35
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:   10 IDQQWMSCKDFILHKVF-KRECKKIVDRYYVPDMNIDETTIVFAPNEFPYSIETGNHWVLWYGCIEQPYSDDRINMDVNKELQRVLEGSQNYDFAWYENPKMSIPDFYHIHVFW 348
            ++  W+S  D++L  VF K + K    ++Y  D  + E  +V  PNE+PY     NHW++WYGC  +PY   +I+ D+ ++L R L  SQ +DF WYENPKMS+P+F+H+HVFW
Sbjct:   49 VEANWVSFADYLLCTVFGKPKAKNGAGKFYSADREVSEVDMVLQPNEYPYDNIQCNHWIMWYGCQYRPYDSAKISSDIEEKLGRHLSDSQRFDFVWYENPKMSLPEFFHVHVFW 162
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BLAST of mRNA_D-dudresnayi_contig9738.28525.1 vs. uniprot
Match: A0A6C0IVF6_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IVF6_9ZZZZ)

HSP 1 Score: 78.2 bits (191), Expect = 9.480e-16
Identity = 39/114 (34.21%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:   28 SCKDFILHKVFK------RECKKIVDRYYVPDMNIDETTIVFAPNEFPYSIETG-NHWVLWYGCIEQPYSDDRINMDVNKELQRVLEGSQNYDFAWYENPKMSIPDFYHIHVFW 348
            S  D IL + FK      ++  K+  R  + D+ +     V   NE+PY + +  NH+V+WY   +   SD  I+ D+   L+ +++ +++++F WYENPKMS+P+ YH+ VFW
Sbjct:   55 SVVDKILIRYFKIRGTINKKSNKMKSRILLTDLKMK----VLLENEYPYKLHSDTNHYVMWYTYRDM--SDSEISQDIYNSLKDIVQ-NKHFEFVWYENPKMSVPEVYHVQVFW 161
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BLAST of mRNA_D-dudresnayi_contig9738.28525.1 vs. uniprot
Match: A0A6C0DV00_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DV00_9ZZZZ)

HSP 1 Score: 70.5 bits (171), Expect = 9.180e-13
Identity = 37/118 (31.36%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:    4 EIIDQQWMSCKDFILHKVFKRECKKIVDRYYVPDMNIDETTIVFAPNEFPYSIETG-NHWVLWYGCIE--QPYSDDRINMDVNKELQRVLEGSQNYDFAWYENPKMSIPDFYHIHVFW 348
            E +   W S +DFIL   FK       +RY + +  + ++   F  + FPY +    NH++LW    +    +++  IN  +   ++ +L  +  +DFAWY+NPK SIP+ +H  VFW
Sbjct:   47 EYVLLNWASFQDFILDTHFKYTVDIKDERYSIQN-EVKKSEWNFQKSLFPYDLPLEVNHYILWNSLYDYSNEFNESMINTIIKDTIESMLT-TDKFDFAWYKNPKPSIPELWHCQVFW 162
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BLAST of mRNA_D-dudresnayi_contig9738.28525.1 vs. uniprot
Match: A0A812YVY4_9DINO (DNAH7 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812YVY4_9DINO)

HSP 1 Score: 70.5 bits (171), Expect = 1.130e-11
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:  130 VFAPNEFPYSI----------ETGNHWVLWYGCIEQPYS------DDRINMDVNKELQRVL--EGSQNYDFAWYENPKMSIPDFYHIHVFW 348
            VFA N +PY +          +   HW+LWY  +  P+       DD I+ DV +EL +++  EG +  D+ WY NP  S+P+ +H+ VFW
Sbjct: 1071 VFAANRYPYQLPERPGKNPLQQRAQHWLLWY--LHFPWEEVADFPDDVIDQDVRRELMKIVHSEGFEKVDYIWYRNPAASVPEVFHVQVFW 1159
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BLAST of mRNA_D-dudresnayi_contig9738.28525.1 vs. uniprot
Match: A0A813DWI5_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DWI5_POLGL)

HSP 1 Score: 65.9 bits (159), Expect = 1.570e-11
Identity = 33/92 (35.87%), Postives = 46/92 (50.00%), Query Frame = 1 
Query:  130 VFAPNEFPYSI-------------ETGNHWVLWYGCI-EQPY---SDDRINMDVNKELQRVL--EGSQNYDFAWYENPKMSIPDFYHIHVFW 348
            VFA N +PY +              +  HW+LWY     +P    SD  IN DV  EL++ +  EG    D+ WY NP  S+P+ +H+ VFW
Sbjct:    1 VFAANRYPYQLPEIPVGPDSHKLKRSAQHWILWYFHFPSEPLPNLSDSLINEDVRGELRKTVKAEGFGRADYIWYRNPFASVPEMFHVQVFW 92
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9738.28525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A482SQU5_9ARCH5.210e-3543.86Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6C0IVF6_9ZZZZ9.480e-1634.21Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0DV00_9ZZZZ9.180e-1331.36Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A812YVY4_9DINO1.130e-1135.16DNAH7 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A813DWI5_POLGL1.570e-1135.87Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9738contigD-dudresnayi_contig9738:3852..4217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size342
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930928.054112-CDS-D-dudresnayi_contig9738:3851..41931622930928.054112-CDS-D-dudresnayi_contig9738:3851..4193Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9738 3852..4193 -
1690557968.6052186-CDS-D-dudresnayi_contig9738:3851..41931690557968.6052186-CDS-D-dudresnayi_contig9738:3851..4193Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9738 3852..4193 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930928.1221676-UTR-D-dudresnayi_contig9738:4193..42171622930928.1221676-UTR-D-dudresnayi_contig9738:4193..4217Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9738 4194..4217 -
1690557968.6133478-UTR-D-dudresnayi_contig9738:4193..42171690557968.6133478-UTR-D-dudresnayi_contig9738:4193..4217Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9738 4194..4217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9738.28525.1prot_D-dudresnayi_contig9738.28525.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9738 3852..4193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9738.28525.1

>prot_D-dudresnayi_contig9738.28525.1 ID=prot_D-dudresnayi_contig9738.28525.1|Name=mRNA_D-dudresnayi_contig9738.28525.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=114bp
MSCKDFILHKVFKRECKKIVDRYYVPDMNIDETTIVFAPNEFPYSIETGN
HWVLWYGCIEQPYSDDRINMDVNKELQRVLEGSQNYDFAWYENPKMSIPD
FYHIHVFWTTTSG*
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mRNA from alignment at D-dudresnayi_contig9738:3852..4217-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9738.28525.1 ID=mRNA_D-dudresnayi_contig9738.28525.1|Name=mRNA_D-dudresnayi_contig9738.28525.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at D-dudresnayi_contig9738:3852..4217- (Desmarestia dudresnayi DdudBR16 monoicous)
CTAGAAATTATTGACCAGCAATGGATGTCATGCAAGGATTTCATTTTACA
TAAGGTGTTCAAAAGAGAGTGTAAAAAGATTGTAGATAGATACTACGTAC
CTGATATGAATATAGATGAAACAACCATCGTCTTCGCTCCGAATGAATTT
CCTTACAGTATCGAGACAGGCAATCATTGGGTACTATGGTATGGATGTAT
TGAACAACCATATTCAGATGATAGAATCAATATGGATGTAAATAAGGAAC
TCCAGCGAGTTCTGGAAGGAAGCCAGAATTACGACTTCGCTTGGTATGAG
AATCCGAAAATGTCAATACCGGATTTCTACCACATTCATGTCTTCTGGAC
CACCACTTCCGGATAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9738:3852..4217-

>mRNA_D-dudresnayi_contig9738.28525.1 ID=mRNA_D-dudresnayi_contig9738.28525.1|Name=mRNA_D-dudresnayi_contig9738.28525.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at D-dudresnayi_contig9738:3852..4217- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCATGCAAGGATTTCATTTTACATAAGGTGTTCAAAAGAGAGTGTAA
AAAGATTGTAGATAGATACTACGTACCTGATATGAATATAGATGAAACAA
CCATCGTCTTCGCTCCGAATGAATTTCCTTACAGTATCGAGACAGGCAAT
CATTGGGTACTATGGTATGGATGTATTGAACAACCATATTCAGATGATAG
AATCAATATGGATGTAAATAAGGAACTCCAGCGAGTTCTGGAAGGAAGCC
AGAATTACGACTTCGCTTGGTATGAGAATCCGAAAATGTCAATACCGGAT
TTCTACCACATTCATGTCTTCTGGACCACCACTTCCGGATAAATGTCATG
CAAGGATTTCATTTTACATAAGGTGTTCAAAAGAGAGTGTAAAAAGATTG
TAGATAGATACTACGTACCTGATATGAATATAGATGAAACAACCATCGTC
TTCGCTCCGAATGAATTTCCTTACAGTATCGAGACAGGCAATCATTGGGT
ACTATGGTATGGATGTATTGAACAACCATATTCAGATGATAGAATCAATA
TGGATGTAAATAAGGAACTCCAGCGAGTTCTGGAAGGAAGCCAGAATTAC
GACTTCGCTTGGTATGAGAATCCGAAAATGTCAATACCGGATTTCTACCA
CATTCATGTCTTCTGGACCACCACTTCCGGATAA
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