mRNA_D-dudresnayi_contig9695.28479.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9695.28479.1
Unique NamemRNA_D-dudresnayi_contig9695.28479.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9695.28479.1 vs. uniprot
Match: D8LPY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 2.060e-20
Identity = 51/93 (54.84%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 RFETVVGRLVTRAKWSSEAAGRPRKDVITRAREMVMAIFVDSYYRRTLSLHRLDVALQQLEGMINWADRAKDSDSAKEF-LTEKKLSLSEIGL 276
            R+  VV +LV R+KW+SE AGR  KDVITRARE++M IF+DS++RR LSLHRL  +L QL+ MI WAD  ++  +AKE  +    + +SEIGL
Sbjct:  247 RYHAVVIKLVARSKWASEPAGRAHKDVITRAREVIMTIFIDSFHRRLLSLHRLVTSLDQLDRMIAWADDVEEGVNAKEAGVLGPGMPMSEIGL 339
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BLAST of mRNA_D-dudresnayi_contig9695.28479.1 vs. uniprot
Match: A0A6H5KKN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.890e-7
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 RFETVVGRLVTRAKWSSEAAGRPRKDVITRAREMVMAIFVDSYYR 135
            R+  VV +LV R+KW+SE  GR  KDVITRARE++M IF+DS++R
Sbjct:  275 RYRAVVIKLVARSKWASEPVGRAHKDVITRAREVIMTIFIDSFHR 319
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9695.28479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPY0_ECTSI2.060e-2054.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKN9_9PHAE3.890e-760.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9695contigD-dudresnayi_contig9695:7274..9414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size856
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9695.28479.1prot_D-dudresnayi_contig9695.28479.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9695 7758..9315 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.1775355-UTR-D-dudresnayi_contig9695:7273..77571622930922.1775355-UTR-D-dudresnayi_contig9695:7273..7757Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9695 7274..7757 -
1690557966.5658114-UTR-D-dudresnayi_contig9695:7273..77571690557966.5658114-UTR-D-dudresnayi_contig9695:7273..7757Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9695 7274..7757 -
1622930922.232759-UTR-D-dudresnayi_contig9695:9315..94141622930922.232759-UTR-D-dudresnayi_contig9695:9315..9414Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9695 9316..9414 -
1690557966.6028025-UTR-D-dudresnayi_contig9695:9315..94141690557966.6028025-UTR-D-dudresnayi_contig9695:9315..9414Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9695 9316..9414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.1966736-CDS-D-dudresnayi_contig9695:7757..79951622930922.1966736-CDS-D-dudresnayi_contig9695:7757..7995Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9695 7758..7995 -
1690557966.5767944-CDS-D-dudresnayi_contig9695:7757..79951690557966.5767944-CDS-D-dudresnayi_contig9695:7757..7995Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9695 7758..7995 -
1622930922.2146661-CDS-D-dudresnayi_contig9695:9280..93151622930922.2146661-CDS-D-dudresnayi_contig9695:9280..9315Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9695 9281..9315 -
1690557966.5876305-CDS-D-dudresnayi_contig9695:9280..93151690557966.5876305-CDS-D-dudresnayi_contig9695:9280..9315Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9695 9281..9315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9695.28479.1

>prot_D-dudresnayi_contig9695.28479.1 ID=prot_D-dudresnayi_contig9695.28479.1|Name=mRNA_D-dudresnayi_contig9695.28479.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=91bp
MVMAIFVDSYYRRTLSLHRLDVALQQLEGMINWADRAKDSDSAKEFLTEK
KLSLSEIGLGKCVCALCCLLCVCARVVPLLPSTNPPCQHS*
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mRNA from alignment at D-dudresnayi_contig9695:7274..9414-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9695.28479.1 ID=mRNA_D-dudresnayi_contig9695.28479.1|Name=mRNA_D-dudresnayi_contig9695.28479.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2141bp|location=Sequence derived from alignment at D-dudresnayi_contig9695:7274..9414- (Desmarestia dudresnayi DdudBR16 monoicous)
AGGTTCGAGACGGTGGTTGGCCGCCTGGTGACGAGAGCAAAATGGTCCTC
GGAGGCTGCTGGTCGACCTCGGAAAGACGTTATCACCAGAGCAAGGGAGA
TGGTCATGGCCATCTTTGTTGATTCCTACTACAGGTGAGATCGGATATCA
CAAAGGTCCTGCCTTTTAAGCGTTTTTGGTAGGCCGGATCTTTATATATG
TTAAGATGTTTCGTTTTTATTATATGATTTAGTACCAACGTGGGCTTCTT
TTCAGCGGTTAGGAAATTTCTATCGCTAAACCTAGCGAAACACTGTACCA
GGTAGTAATATACTTAAGTAAAGAGTTAGAACCTAAAAAAACGCTACGCC
TACTTAATGCTGCTACTCGTATCGATAAATAATAAGTATGACTTGACTAC
GATGATACGTTTTCTCATGAGTAGACAGGGGTGGCGCAATGGCCTAATGG
TTAGGGTGTTGCCTCTGTTGGCGGAAGGTCCGGGTTCGATTTCCCGGTGG
CACTTTTCTGTGCCATATTGCGTCGCGGAAAATACGAGAGCGTGAGTAAT
AGCACAATTCGATGAAAGTCGACGACGGAAGAAAGTGCTGCACTCTTCTC
GCGATAAAAATGTAGGCACGTACCGTAGTAGGAAGGCTGAAGGAGCGCCT
TCTGTGTGACCCCGGATCTGAGTTACGAAGAGAGATGGAGCTATAGGAAG
AATAGCGCGAAGATCATAAATGGGACGGAAAAAAAAAAAAAAAAAACCTC
ACGAGTACACCCACCTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCGAGG
TAGTTATACCTATTCGTTATAGAGAGATCTCGTATATTTTTGGTTTTATT
ACACTTCATAGTATAGACTTGGGTTATCAGAAAATGCTACCTGTAGGAGA
CTCTATATAGCACGAACCCTAAGCCTAACCTTAATGACCCCACTGTACTA
GTAGCAAGTAAATAAATTTCTGAGAAGTTTGCTCTCTAACGATCGCTAAC
ATGTACTCCCCCCCCCCTCTCCTCCGCTCCGCTCCGCGCAAGTGGGATGA
TATCACGTAGTTTATATATGGTAAGGCACCCACGAGACACTTACATAGTA
TACCCATGGCTGTCTCTGGAAATGGCCACACCAGAAAACAAGCTGTTCAT
TCGAAGCTGCTGTCATCCATATGCAAGAAAGTCCGCCTCACAAGTGGTTC
TTAGTAGGATGTAGCTCACCCTTCATGCGAATCGCCGAACACCTCACGGC
GCTTCGCGCTTGGTGCACGCGATGTCTGCCTGATCGGTGAAAACCCGACG
TGCTCCGTCCCAGCATTGTAGGGATGCGAGGGTCTATGGTCATACGGCTA
TGGCCATGCATGAAATGAGTACACCCCCCCCTCTCCGCCTTATGTCTTCG
GTGGCCGCACTTCTGGCAGGCGAACCCTGTCGTTACATCGACTGGACGTG
GCCCTCCAACAGCTAGAAGGAATGATTAATTGGGCAGACAGGGCGAAGGA
CTCGGATAGCGCCAAAGAATTTCTCACGGAGAAGAAGCTGTCGTTGAGCG
AGATCGGATTGGGTAAATGTGTTTGTGCTTTGTGTTGTCTGCTGTGCGTG
TGTGCTAGAGTTGTGCCCCTTTTACCAAGTACAAACCCTCCTTGTCAACA
CTCGTGACGGGTACGAGTACAACATCAAAACCCTCCTGATTTTGGGTGCA
GAGTACTCGTGAGTTTCGAGTACCCTGGTACTCGCTGTTTCACCCTGGAA
TCCCCGGGGATGGCAAATTTCCATCCCCTTAATCACGTCCCCTGGGCAGA
ACTTTGTACAAAACCTCCAGGAAACCCGTTTCAAAAGCGCTCTGTGGGAC
GATTTTAGTAATTTCACAACTGAGGTGTACCTTTTATTCTGTCGAAAACT
CGGGTACTCGCGGGTACCCGAATACCTGGGTACTCGGTGTTTCACCCTGG
AAACCCAGGGATGGCCTTTTTTTTATTCCGTCCCATTTATTGTCTTCGCC
CTATTCTTTCTCTAGCTCCATTATCACCCCGTAAATCCTGCCGCAAGTAT
AGCGTTCAAATCTCAACTAGCAGGACGGTGGTTTTTTCTGGAATCGCGGC
TGGCTATATCGAAGGCCTGCGGCTGGGATACTGGGTATGGC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9695:7274..9414-

>mRNA_D-dudresnayi_contig9695.28479.1 ID=mRNA_D-dudresnayi_contig9695.28479.1|Name=mRNA_D-dudresnayi_contig9695.28479.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at D-dudresnayi_contig9695:7274..9414- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTCATGGCCATCTTTGTTGATTCCTACTACAGATGGTCATGGCCATC
TTTGTTGATTCCTACTACAGGCGAACCCTGTCGTTACATCGACTGGACGT
GGCCCTCCAACAGCTAGAAGGAATGATTAATTGGGCAGACAGGGCGAAGG
ACTCGGATAGCGCCAAAGAATTTCTCACGGAGAAGAAGCTGTCGTTGAGC
GAGATCGGATTGGGTAAATGTGTTTGTGCTTTGTGTTGTCTGCTGTGCGT
GTGTGCTAGAGTTGTGCCCCTTTTACCAAGTACAAACCCTCCTTGTCAAC
ACTCGTGAGCGAACCCTGTCGTTACATCGACTGGACGTGGCCCTCCAACA
GCTAGAAGGAATGATTAATTGGGCAGACAGGGCGAAGGACTCGGATAGCG
CCAAAGAATTTCTCACGGAGAAGAAGCTGTCGTTGAGCGAGATCGGATTG
GGTAAATGTGTTTGTGCTTTGTGTTGTCTGCTGTGCGTGTGTGCTAGAGT
TGTGCCCCTTTTACCAAGTACAAACCCTCCTTGTCAACACTCGTGA
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