mRNA_D-dudresnayi_contig968.28467.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig968.28467.1
Unique NamemRNA_D-dudresnayi_contig968.28467.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig968.28467.1 vs. uniprot
Match: D7FI75_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI75_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 3.280e-57
Identity = 129/276 (46.74%), Postives = 154/276 (55.80%), Query Frame = 1 
Query:    1 NREATLRLESGMGRLWINPFKSAVPLLGDYDINVVLLALKLKECRVSVHVVFNPKDPSAFELALEQAALEDPSVRGVIVNFVCRTLMWGPWVSHHFYAIVKGPVTLGPSSNADA------------------------ETRGNATAAEVAGAKQGAGEGGGVDSVTPTCLGRATTPSAPLADKSHRPSTDTTGGSGGNPTATQDDESGGSSGEAVGSKTGTHEWYSLDSRLPKPKRLGGAKGLMAHLAWEVREHHGHVFVVREGREE--GCNDDLD 750
            NREATLR ESG+ RL INP+KS +P++GDYDINVVL ALKL+ECRVS+HVVFN KDP+AFELAL +   +  ++RGVIVNFVCR+L+WG WV+HHFYAIVK     GP    D                         E  G                  G D     C  + +         S R   D  G +    ++ Q    G   G A G+      WYSLDSR+PKP+RLGG +GL+ HLAWEVREHHGHVFVV EG EE  G   D D
Sbjct:   39 NREATLRSESGLRRLLINPYKSVIPMVGDYDINVVLEALKLRECRVSLHVVFNAKDPTAFELALARVDWDSATIRGVIVNFVCRSLLWGSWVTHHFYAIVKAK---GPGDGDDGLSPGGXXXXXXXXXXXXXXXTRHLERVGXXXXXXXXXXXXXXXXXXGDDGEQTGCFEKLS--------PSRRRGKDNRGRTRNRTSSNQGSCCGSDGGGAGGTA-----WYSLDSRIPKPQRLGGTRGLVEHLAWEVREHHGHVFVVGEGAEEVAGVGHDSD 298
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BLAST of mRNA_D-dudresnayi_contig968.28467.1 vs. uniprot
Match: A0A6H5K9J2_9PHAE (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J2_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.200e-27
Identity = 59/103 (57.28%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:    1 NREATLRLESGMGRLWINPFKSAVPLLGDYDINVVLLALKLKECRVSVHVVFNPKDPSAFELALEQAALEDPS---VRGVIVNFVCRTLMWGPWVSHHFYAIV 300
            NREAT+R ESGMGR+W+NP+KS VP +G YDIN +L AL LK+C VS+H VFNPK+P+A   +LE     DPS   VRG++VN V ++L+ G + +HHFYAI+
Sbjct:   44 NREATMRKESGMGRMWVNPYKSVVPQVGYYDINCLLEALNLKKCHVSLHAVFNPKEPNAVAKSLEHL---DPSLGGVRGIVVNRVSKSLLGGLYTTHHFYAII 143
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BLAST of mRNA_D-dudresnayi_contig968.28467.1 vs. uniprot
Match: D8LDY3_ECTSI (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY3_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.320e-22
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:   34 MGRLWINPFKSAVPLLGDYDINVVLLALKLKECRVSVHVVFNPKDPSAFELALEQAALEDPS---VRGVIVNFVCRTLMWGPWVSHHFYAIV 300
            MGR+W+NP+KS VP +G YDIN +L ALKLK+C +S+H VFNPK+P+A   +LE     DPS   VRG++VN V ++L+ G + +HHFYAI+
Sbjct:    1 MGRMWVNPYKSVVPQVGYYDINCLLEALKLKKCHISLHAVFNPKEPNAVAKSLEHL---DPSLGGVRGIVVNRVSKSLLGGLYTTHHFYAII 89
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BLAST of mRNA_D-dudresnayi_contig968.28467.1 vs. uniprot
Match: A0A836CAV1_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.080e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    4 REATLRLESGMGRLWINPFKSAVPLLGDYDINVVLLALKLKECRVSVHVVFNPKDPSAFELALEQAALEDPSVRGVIVNFVCRTLMWGPWVSHHFYAIVK 303
            +E+ LR  SG+  LW+NPFKSAVP LG YD++V++ AL+ +  RVS HV +NP  P      L +  LE     G+I+N    +++W P    H+ A+ +
Sbjct:   14 KESALRKASGLSTLWVNPFKSAVPFLGYYDLSVLVEALQTRGVRVSAHVAWNPAHPDLCAQELTEVDLEH--CVGLIINCRDPSMVWRP---RHWLAVAR 108
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig968.28467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FI75_ECTSI3.280e-5746.74Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K9J2_9PHAE2.200e-2757.28Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDY3_ECTSI1.320e-2254.35Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus silicul... [more]
A0A836CAV1_9STRA4.080e-1240.00Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig968contigD-dudresnayi_contig968:8687..11968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMachado-Joseph disease protein MJD
Ec32 orthologEc-23_003660.1
Exons2
Model size2719
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig968.28467.1prot_D-dudresnayi_contig968.28467.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig968 8720..10026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.3100567-UTR-D-dudresnayi_contig968:8686..87191622930920.3100567-UTR-D-dudresnayi_contig968:8686..8719Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig968 8687..8719 +
1690557965.863586-UTR-D-dudresnayi_contig968:8686..87191690557965.863586-UTR-D-dudresnayi_contig968:8686..8719Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig968 8687..8719 +
1622930920.3971765-UTR-D-dudresnayi_contig968:10026..119681622930920.3971765-UTR-D-dudresnayi_contig968:10026..11968Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig968 10027..11968 +
1690557965.8992748-UTR-D-dudresnayi_contig968:10026..119681690557965.8992748-UTR-D-dudresnayi_contig968:10026..11968Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig968 10027..11968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.3415668-CDS-D-dudresnayi_contig968:8719..88511622930920.3415668-CDS-D-dudresnayi_contig968:8719..8851Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig968 8720..8851 +
1690557965.873591-CDS-D-dudresnayi_contig968:8719..88511690557965.873591-CDS-D-dudresnayi_contig968:8719..8851Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig968 8720..8851 +
1622930920.3741536-CDS-D-dudresnayi_contig968:9414..100261622930920.3741536-CDS-D-dudresnayi_contig968:9414..10026Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig968 9415..10026 +
1690557965.8871663-CDS-D-dudresnayi_contig968:9414..100261690557965.8871663-CDS-D-dudresnayi_contig968:9414..10026Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig968 9415..10026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig968.28467.1

>prot_D-dudresnayi_contig968.28467.1 ID=prot_D-dudresnayi_contig968.28467.1|Name=mRNA_D-dudresnayi_contig968.28467.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=248bp
MGRLWINPFKSAVPLLGDYDINVVLLALKLKECRVSVHVVFNPKDPSAFE
LALEQAALEDPSVRGVIVNFVCRTLMWGPWVSHHFYAIVKGPVTLGPSSN
ADAETRGNATAAEVAGAKQGAGEGGGVDSVTPTCLGRATTPSAPLADKSH
RPSTDTTGGSGGNPTATQDDESGGSSGEAVGSKTGTHEWYSLDSRLPKPK
RLGGAKGLMAHLAWEVREHHGHVFVVREGREEGCNDDLDLGKEATTV*
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mRNA from alignment at D-dudresnayi_contig968:8687..11968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig968.28467.1 ID=mRNA_D-dudresnayi_contig968.28467.1|Name=mRNA_D-dudresnayi_contig968.28467.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3282bp|location=Sequence derived from alignment at D-dudresnayi_contig968:8687..11968+ (Desmarestia dudresnayi DdudBR16 monoicous)
AACCGTGAGGCAACTCTACGATTGGAATCGGGCATGGGGCGGTTGTGGAT
TAACCCATTCAAGTCGGCGGTTCCGTTGTTAGGGGATTATGACATCAACG
TTGTGCTGTTAGCGTTGAAGCTCAAGGAATGTCGCGTCAGCGTCCACGTG
GTCTTCAACCCGAAGGTAATTTGACTGTAGGCGTTTCATCCTGTATCGTG
TTGGTATTGGGGGGTGGGCCGGCACAGCCAAGGAAAAGTATGCCCTACGT
ATTGCAACAACAATGTCACCCTCTCACGTGCAGGACCAACGCTGTGCTCC
AGTGATCAAAATAGTGCTAGCCGGACATGGCTCCAAATGATAATTTGCCA
TGTATTTTTTAGAAAGAGCAGGAGAGCCTCTTTATGAGCGCACACGGCGA
AACTACGTTTGAGCAAGCCGATGTTATCGTTCTTCGATGCACCCAGGCTT
TAATAACGCTTGACTTCCTTCATAGGCGACCCAGACAAAATCCGACAGCA
CTGGCTTCGTCCTCTTTTTTTGTCGCGCTACAGATGTAAAGCCTTTTGCT
TGTCATAAGCCATTTCTGTCGTAGCTCTACATCCCTAGGCGGGTAACGCC
TCATGCTGTAGTACTCCCTGGTTTTACTACATAAACAGCACGCATATAAT
AGGTATACACCCTCCAGTGCAAGCATCGCGACCGTATCCTTGCCCCTTGC
ACCCCGCCACCCCTATGACTACCGTCAGGACCCCAGCGCGTTCGAACTTG
CACTTGAGCAGGCAGCTCTGGAAGACCCCTCGGTACGAGGGGTTATCGTG
AACTTTGTTTGCAGGACTCTGATGTGGGGACCATGGGTCAGCCACCACTT
TTACGCCATCGTCAAGGGTCCCGTCACACTCGGCCCGTCGTCGAACGCGG
ATGCTGAGACTAGGGGAAACGCGACGGCGGCTGAAGTTGCGGGAGCCAAA
CAGGGTGCGGGCGAGGGGGGAGGCGTCGATAGCGTGACGCCAACGTGCCT
AGGGCGGGCAACAACGCCCTCTGCACCACTCGCCGACAAGTCGCATCGGC
CATCGACGGATACGACAGGGGGAAGCGGCGGTAACCCCACGGCCACACAA
GATGACGAATCCGGTGGGAGTTCAGGCGAGGCGGTCGGCTCGAAAACGGG
GACGCACGAATGGTATAGCCTCGACTCTAGGTTGCCGAAGCCCAAGCGAC
TAGGGGGAGCGAAAGGTCTCATGGCGCACCTCGCGTGGGAGGTGCGGGAG
CACCACGGGCATGTGTTTGTGGTGCGCGAAGGGCGAGAAGAGGGGTGCAA
CGACGACCTCGATCTTGGCAAAGAAGCGACGACTGTTTAGATCAACGGCA
GGGGGCAGGGAAGAACAGGAGAGCGTTTCTCATTCATTATGCACCCGGTG
GTTGTTGATCGTTGGCCTCGCACCTTGATGGAAGCGGTACGATGGTGGTG
CGAGTTTTGCCGACCCAGGCTGCGTCCTGTATGGCTCACCGCAGTATGGT
TGCAGTCTTTGCCCTTGCGTTATCACGCCAAGCGCACACCTGCCAACGTT
GATTACGTGTTTTCTCTTTTATCCTCCGCCGGATAGGTAAAACTAGACCT
TAAAGCTCGCCACACTTCCACAGCATGCCGTAGAACTACCGATTCAACCA
TTGTTGTAGCAGAACACAATGGTTGATTGCTGCCGTTACGGCTGCGTGGG
TACATCGAGCGCCCTTCTGCTACTATTGGGGTATCAGGCCATGGGATATA
GCCACCCGGGGAGGCAATCTCCCCTGGTACGTGTGGGACATACGGGAGCT
CAGCCACTGACGAAAGACCAGGCTGGGCCACCTCGCCAGCTGGTCTCGGT
CCAGTTACGGTCCACCCTACCTGCCCGTTCCGGCATTGATTCGGCATCGC
GGGTAACGTCTCGCACATACAGTAGTAGCAGGCACGATTGACTGACTGTA
CCCAAGGTATTGCGAGAGACTGTGATTTCCGCGCCAACCTGAAAACAGCC
CCGCAACCCCCACTGCGCTCCCCTTTGCAACTTGGGTACAATGTGCTCGC
ATACTCCTGGTGCGATCGTGACAACGATAGTAGTGTCCCTTTAGTGCATT
CCAACACTATTATACTACATTCAGCAGATATGCTTGAGGATGTGACGCGT
TGGGACCCGCAACGTAATACGAATTTCTCCAAGCTCGCTGGATATACCGC
ACGAATCCTATCGAAGGTAGAGCGCGCGGGGGGGGGCGGTAGTTGGGTGT
GCTCTTAGCTATAAGTTGTAAGGTACATTTCGTGGGTGTAGCGTACGATG
GCGCAGTAGCGTTTTGCGGTGAGCTTGTTAATGTTGTTTGTTGATGAGTG
TTCGATTGTAATTAAGAGCTGTGTTGCTGTGGAGTCGAATCGCGAACGTG
TAGCGTACGATGGCGCAGTAGCTTTTTGGCTGTGAGCTTGTTAGTGTTGT
TTGTTGATGAGTGTTCGGTTGTAATTAAGAGCTGTGTTGCTGTGGGGTCG
AATCGCACTCCTCTGTTCTCACGTTTTGTTTTGCGATTTGGTGCGATTCA
GTTTGTCGAAATCACCGCCTGGGAGGAGCCTAACGTGAATTCGCCGTATA
TCGATAATAAGCGGACCACCGGCAGGAATTGGACAACACTGGGCTGCTAA
CAGAAGAACCTTACTTCGCAGATCATTTTCAGTTAGCTGTGGCTCGCACA
CATTGCTTCTATTATTAGGATTTGGTATTCGAGTGGCCGCCCTCTCTTGT
CGAGGGGCATTCCACGCCATCGCTCTCAATGGTAGGTAGCTGTTGACAAA
GAGACGCTGTTGGGTGGGGCGACACAGATCAACGAGTCTGCGTGTTGTGT
TATTGCCCGCGATATGGCGTTGGTAGTGAAGCGCGCACTGGACAAAAGCT
CGAATCAGTTGTATGATGCGCGCGGAATCATCGCGATTTTATGTTGCATT
GATTGCCTGCATATAGATAGGCATATAATAACCGCCGTGCATGAGCGCAA
ATGCATACCATGCTCATTACGACGTATGGCCAGTTCAGTCGTGACGGGCC
AAGCCATAAGTTAGAGCTCTCGGTCTCGAGCCAATCTCCTAGTTTTGAGC
TACGACAGCTTGTCTGGGTGATGGCTTGATGAAGGATATAGGAATACGAA
GTGTTAAAGTACAAGCCTAAAACAGTCACCCTTGAGGAGCAACAAAAAAG
GGTGTCGTCATTGAGGGATCAGCTTTTTACTTTGAAGTGCACTTATCATA
GGTCTTGTTGGCCGGACCCTTGTTCCTCCTCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig968:8687..11968+

>mRNA_D-dudresnayi_contig968.28467.1 ID=mRNA_D-dudresnayi_contig968.28467.1|Name=mRNA_D-dudresnayi_contig968.28467.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at D-dudresnayi_contig968:8687..11968+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGGCGGTTGTGGATTAACCCATTCAAGTCGGCGGTTCCGTTGTTAGG
GGATTATGACATCAACGTTGTGCTGTTAGCGTTGAAGCTCAAGGAATGTC
GCGTCAGCGTCCACGTGGTCTTCAACCCGAAGATGGGGCGGTTGTGGATT
AACCCATTCAAGTCGGCGGTTCCGTTGTTAGGGGATTATGACATCAACGT
TGTGCTGTTAGCGTTGAAGCTCAAGGAATGTCGCGTCAGCGTCCACGTGG
TCTTCAACCCGAAGGACCCCAGCGCGTTCGAACTTGCACTTGAGCAGGCA
GCTCTGGAAGACCCCTCGGTACGAGGGGTTATCGTGAACTTTGTTTGCAG
GACTCTGATGTGGGGACCATGGGTCAGCCACCACTTTTACGCCATCGTCA
AGGGTCCCGTCACACTCGGCCCGTCGTCGAACGCGGATGCTGAGACTAGG
GGAAACGCGACGGCGGCTGAAGTTGCGGGAGCCAAACAGGGTGCGGGCGA
GGGGGGAGGCGTCGATAGCGTGACGCCAACGTGCCTAGGGCGGGCAACAA
CGCCCTCTGCACCACTCGCCGACAAGTCGCATCGGCCATCGACGGATACG
ACAGGGGGAAGCGGCGGTAACCCCACGGCCACACAAGATGACGAATCCGG
TGGGAGTTCAGGCGAGGCGGTCGGCTCGAAAACGGGGACGCACGAATGGT
ATAGCCTCGACTCTAGGTTGCCGAAGCCCAAGCGACTAGGGGGAGCGAAA
GGTCTCATGGCGCACCTCGCGTGGGAGGTGCGGGAGCACCACGGGCATGT
GTTTGTGGTGCGCGAAGGGCGAGAAGAGGGGTGCAACGACGACCTCGATC
TTGGCAAAGAAGCGACGACTGTTTAGGACCCCAGCGCGTTCGAACTTGCA
CTTGAGCAGGCAGCTCTGGAAGACCCCTCGGTACGAGGGGTTATCGTGAA
CTTTGTTTGCAGGACTCTGATGTGGGGACCATGGGTCAGCCACCACTTTT
ACGCCATCGTCAAGGGTCCCGTCACACTCGGCCCGTCGTCGAACGCGGAT
GCTGAGACTAGGGGAAACGCGACGGCGGCTGAAGTTGCGGGAGCCAAACA
GGGTGCGGGCGAGGGGGGAGGCGTCGATAGCGTGACGCCAACGTGCCTAG
GGCGGGCAACAACGCCCTCTGCACCACTCGCCGACAAGTCGCATCGGCCA
TCGACGGATACGACAGGGGGAAGCGGCGGTAACCCCACGGCCACACAAGA
TGACGAATCCGGTGGGAGTTCAGGCGAGGCGGTCGGCTCGAAAACGGGGA
CGCACGAATGGTATAGCCTCGACTCTAGGTTGCCGAAGCCCAAGCGACTA
GGGGGAGCGAAAGGTCTCATGGCGCACCTCGCGTGGGAGGTGCGGGAGCA
CCACGGGCATGTGTTTGTGGTGCGCGAAGGGCGAGAAGAGGGGTGCAACG
ACGACCTCGATCTTGGCAAAGAAGCGACGACTGTTTAG
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