mRNA_D-dudresnayi_contig9611.28394.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9611.28394.1
Unique NamemRNA_D-dudresnayi_contig9611.28394.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9611.28394.1 vs. uniprot
Match: A0A7S3HAL0_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAL0_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.190e-62
Identity = 134/320 (41.88%), Postives = 187/320 (58.44%), Query Frame = 1
Query:   16 RRIIRRNLNRILFEQDEVHLTDDGCYITHIPKEDN-RVKHIEKILKLKVGDSLRTGILDLGMSNAATIEDMVDGITINLGSKESIYTTPSPKIDLLLALPRPQKLEKLLPIISCLGVRNIFLVDACKVEKDYFGSHLLRNPAKMRQLLIEGLSQAEVDCTLPKVRVIRNLKEFLLNELNKELPL-------------------------------HSGYNN-----------ENGNYSDTITT-------NSTA----SNSSECASSATPTTTPKS----MLLAVGPEGGWLSHEVSLFQQQHFQLVHLGNRILRTDIAV 801
            R + RRN+NR+L E  EV++      +T + K+D+ R KHI+++L L+ GD +R+ +++ GM+N ATI+++ D + +NLG + + Y    PK+DL+LALPRPQKL KLLPI+SCLGVR +++V A KVE  YFGSHLLR   ++RQLL+EGL+QAEVDC LP+V + +NL++F+  EL+ +  L                                 G NN           E   Y  ++ +       NS      SN  E  S+ T     KS    + +A+GPEGGWL  EV LFQ Q FQLV+LG R+LRTDIAV
Sbjct:   29 RLMTRRNMNRLLCEVTEVNIDKHTQEMTLVLKKDDPRTKHIKEVLHLQPGDPIRSAVINRGMTNNATIQNIGDDVEVNLGCESNFYLGDRPKVDLILALPRPQKLAKLLPIMSCLGVRRLYIVGANKVEPAYFGSHLLREKKEIRQLLLEGLAQAEVDCFLPEVHIAKNLRQFVDEELSSKSDLGQNIRIIAHPPIKEYNENRLENTLSPRPMRDRGGENNLLSYQNVDNPLEKVGYVSSLQSLRISDYLNSIIPPLPSNPIEPFSTCTVHDKVKSDERGITIAIGPEGGWLDEEVRLFQHQGFQLVNLGPRVLRTDIAV 348          
BLAST of mRNA_D-dudresnayi_contig9611.28394.1 vs. uniprot
Match: A0A1Z5JKH5_FISSO (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKH5_FISSO)

HSP 1 Score: 145 bits (365), Expect = 3.750e-38
Identity = 105/284 (36.97%), Postives = 151/284 (53.17%), Query Frame = 1
Query:   37 LNRILFEQDEVHLTDDGCY-ITHIPKEDNRVKHIEKILKLKVGDSLRTGILDLGMSNA-----ATIEDMVDG----------------ITINLGSKESIYTTPSPKIDLLLALPRPQKLEKLLPIISCLGVRNIFLVDACKVEKDYFGSHLLRNPAKMRQLLIEGLSQAEVDCTLPKVRVIRNLKEFLLNELNKELPLHSGYNNENGNYSDTIT-----TNSTASNSSECASSATPTTTPKSMLLAVGPEGGWLS-HEVSLFQQQH-FQLVHLGNRILRTDIAV 801
            LNR L   +EV   +D       + K+D R  H  KIL L+ GDS+R G++     N      AT++ + +G                + I L S ES     S  + L+LALPRP +L ++LP+IS +GV ++ L +A KV KDYFGSHL R P  + + LIEGL Q+  D  LP+V V++NL +F+ + L++  PLHS        ++  I             S    S   PT +P+ M++AVGPEGGW   +E+  F  QH FQ + +G R+LR+D AV
Sbjct:   18 LNRFLLSPEEVSQDEDSSLPYAVLGKDDYRTIHAAKILNLRNGDSVRAGLVSSEDHNGFLTDHATVQWLPEGKVKKAEVLNNGDPPGSLHIRLQSLESSTQRFSHSVSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSG-DTKLPQVTVVKNLSQFMDDTLDELFPLHS--------HARVIAHPQRVVKDRVIESVRMRSVTFPTDSPRRMVIAVGPEGGWEEPNEIERFVNQHGFQQITMGTRVLRSDCAV 292          
BLAST of mRNA_D-dudresnayi_contig9611.28394.1 vs. uniprot
Match: B7FST2_PHATC (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FST2_PHATC)

HSP 1 Score: 145 bits (366), Expect = 4.760e-38
Identity = 98/280 (35.00%), Postives = 152/280 (54.29%), Query Frame = 1
Query:   37 LNRILFEQDEVHLTDDGCYITHIPKEDNRVKHIEKILKLKVGDSLRTGILDLG-----MSNAATIEDMVDG----------------ITINLGSKESIYTTPSPKIDLLLALPRPQKLEKLLPIISCLGVRNIFLVDACKVEKDYFGSHLLRNPAKMRQLLIEGLSQAEVDCTLPKVRVIRNLKEFLLNELNKELPLHSGYNNENGNYSDTITTNSTASNSSECASSATPTTTP---KSMLLAVGPEGGWLS-HEVSLFQQQHFQLVHLGNRILRTDIAV 801
            LNR LF+  EV  TD       +P++D R  H  KIL L+ G+++R G++        +++ AT++ + +G                + I+L   ++      P + L+LALPRP +L ++LP+IS +GV ++ L  A KV KDYFGSHLLRNP ++R+ LIEGL QA  D  LP++ ++RNL++FL NE+++  P +         Y+  I      S+             P     +++AVGPEGGW    E+  F+   FQ + +G R+LR+D AV
Sbjct:   47 LNRFLFDTSEVKYTDTELPSITLPRDDFRTIHASKILGLRNGNTIRAGLVSCEVHQGLLTDDATVQWIPEGKVKKAEPLGNGNPPGSLHIHLNGLQAPAEQLVPSVSLILALPRPLQLGRMLPMISQMGVNHLVLAQAQKVPKDYFGSHLLRNPEELREKLIEGLCQAG-DVRLPQLHIVRNLRDFLTNEVDEIFPKNQ--------YARAIAHPQRTSDPMGSLKKMKQVEFPVKSSRLVVAVGPEGGWEEPDELDRFRDCGFQQITMGARVLRSDCAV 317          
BLAST of mRNA_D-dudresnayi_contig9611.28394.1 vs. uniprot
Match: A0A7S4NPP0_GUITH (16S rRNA (uracil(1498)-N(3))-methyltransferase n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NPP0_GUITH)

HSP 1 Score: 144 bits (362), Expect = 2.910e-37
Identity = 108/275 (39.27%), Postives = 145/275 (52.73%), Query Frame = 1
Query:   31 RNLNRILFEQDEVHLTDDGCYITHIPKEDNRVKHIEKILKLKVGDSLRTGILDLGMSNAATIEDMVDGITINLGSKESI------YTTPS-PKIDLLLALPRPQKLEKLLPIISCLGVRNIFLVDACKVEKDYFGSHLLRNP-AKMRQLLIEGLSQAEVDCTLPKVRVIRNLKEFLLNELNKELPLHSGYNNENGNYSDTITTNSTASNSSECASSATPTTTPKS---------MLLAVGPEGGWLS-HEVSLFQQQHFQLVHLGNRILRTDIAV 801
            R LNR+LFE +EV  +     + ++ K D RV HI+KILKL+ G SLR G++D G    A +E   DG ++ L   +S       YT    P+IDLL+ALPRP  L   L I + +GV N+   +A KV++DYFGSHLLR P +KMRQ L EGL QA  +  LPKV V + LK FL  +L++  P             DTI              S  P   P           +L+ VGPE GW   +E+ L  +  FQ + LG R  RT++A+
Sbjct:   79 RCLNRLLFEPEEVVPSSQSSCLLYLAKSDKRVTHIKKILKLENGQSLRIGVVDAGKEEDAVLEWQDDG-SLKLQISQSAEQLCAPYTADKIPRIDLLIALPRPPNLGDFLGIAAQMGVANVIFCNANKVQQDYFGSHLLRPPMSKMRQALKEGLEQAG-ETYLPKVHVAKRLKYFLEEQLDQICP-------------DTIRM------VGHPQKSWLPPLPPMRDVQVPPNGRILVGVGPEAGWQDPYELELLGEHGFQGISLGPRTYRTEVAL 332          
BLAST of mRNA_D-dudresnayi_contig9611.28394.1 vs. uniprot
Match: A0A4D9D2J3_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2J3_9STRA)

HSP 1 Score: 143 bits (361), Expect = 3.230e-37
Identity = 99/291 (34.02%), Postives = 160/291 (54.98%), Query Frame = 1
Query:   37 LNRILFEQDEVHLT----DDG------CYITHIPKEDNRVKHIEKILKLKVGDSLRTGILDLGMSNAATIEDMVDG-ITINLGSKESIYTTPS----PKIDLLLALPRPQKLEKLLPIISCLGVRNIFLVDACKVEKDYFGSHLLRNPAKMRQLLIEGLSQAEVDCTLPKVRVIRNLKEFLLNELNKELPLHSGYNNENGNYSDTITTNS--------TASNSSECASSATPTTTPKS------------MLLAVGPEGGWLS-HEVSLFQQQHFQLVHLGNRILRTDIAV 801
            LNR+LFE +E++LT     DG        I  + ++D R +H+ K+L+ K GD +R G+L+ G ++ A +E    G + + +G    + T PS    P++D+LLA+  P ++E+++P +  LGV  + +  A KVEK Y+GSHLLR P  +R+L++EGLSQA  D  +P + + R LK FL ++L    P  S   + + ++  T+   S        +    +     + P   PK+            +LLA+GPE GW   +E+ LF++  FQ + LG R+LRT+ AV
Sbjct:    3 LNRLLFEAEEINLTLRNPQDGRGEGEESAIVRLGQDDARAQHVRKVLRAKTGDEVRVGVLNGGRNDRAVVEWTEGGELHLAMGPSLPLLTPPSEALRPRVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAG-DTIVPDIIIDRRLKRFLSDKLEVLYP-SSPPPSASSSFQHTLRVLSHPFRALHDSVGVDTRFRQLSWPFPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAV 291          
BLAST of mRNA_D-dudresnayi_contig9611.28394.1 vs. uniprot
Match: A0A1Z5K163_FISSO (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K163_FISSO)

HSP 1 Score: 142 bits (359), Expect = 4.780e-37
Identity = 102/284 (35.92%), Postives = 151/284 (53.17%), Query Frame = 1
Query:   37 LNRILFEQDEVHLTDDGCY-ITHIPKEDNRVKHIEKILKLKVGDSLRTGILDLGMSNA-----ATIEDMVDG----------------ITINLGSKESIYTTPSPKIDLLLALPRPQKLEKLLPIISCLGVRNIFLVDACKVEKDYFGSHLLRNPAKMRQLLIEGLSQAEVDCTLPKVRVIRNLKEFLLNELNKELPLHSGYNNENGNYSDTIT-----TNSTASNSSECASSATPTTTPKSMLLAVGPEGGWLS-HEVSLFQQQH-FQLVHLGNRILRTDIAV 801
            LNR L   +EV    D       + K+D R  H  KIL L+ GDS+R G++    +N      AT++ + +G                + I L S ES     S  + L+LALPRP +L ++LP+IS +GV ++ L +A KV KDYFGSHL R P  + + LIEGL Q+  D  LPKV ++++L +FL  ++++  PLHS        Y+  I             S    S + PT +P+ +++AVGPEGGW   +E+  F  +H F  + +G R+LR+D AV
Sbjct:   40 LNRFLLSAEEVSRDKDATLPYAILGKDDYRTIHAAKILNLRNGDSVRAGLVSSNDNNGFLTDHATVQWLPEGKIKKAEVLNNGEPPGSLHITLQSLESSTQRFSHSVSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSG-DTKLPKVTIVKSLSQFLDGKVDELFPLHS--------YARVIAHPQRVVEDRVIESVRMRSVSFPTDSPRKIVIAVGPEGGWEEPNEIDRFVNEHDFHQITMGTRVLRSDCAV 314          
BLAST of mRNA_D-dudresnayi_contig9611.28394.1 vs. uniprot
Match: K0SJH0_THAOC (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJH0_THAOC)

HSP 1 Score: 139 bits (349), Expect = 3.090e-35
Identity = 111/327 (33.94%), Postives = 164/327 (50.15%), Query Frame = 1
Query:   37 LNRILFEQDEVHLTDDGC--YITHI--PKEDNRVKHIEKILKLKVGDSLRTGIL---------DLG--MSNAATIEDMVDG------------------ITINLGSKESIY-------TTPSPKIDLLLALPRPQKLEK-----------------------LLPIISCLGVRNIFLVDACKVEKDYFGSHLLRNPAKMRQLLIEGLSQAEVDCTLPKVRVIRNLKEFLLNELNKELP--------LHSGYNNENGNYSDTITTNSTASNSSECASSATPTTTPKSMLLAVGPEGGWLS-HEVSLFQQQHFQLVHLGNRILRTDIAV 801
            LNRI+F+  E+ +  D    Y+  +  PK+D R +HI K L L+ GD +R G +          LG  M++ A +E + +G                  + I    K S++       T  +P++ LLLALPRP +L++                       LLP+++ LGV N+ L +A KV KDYFGSHL R P+ +R LL+EGLSQ+  D  LP+V V + LK FL +EL++  P         H    +E G  +        A++ S           P+ +LLAVGPEGGW   +E+ +FQ+  F+ + LG R+LRTD+AV
Sbjct:   40 LNRIMFDATELSVVSDQSKGYLATVTLPKDDYRTRHIAKTLNLQNGDCVRAGCVRDRDPSEFDSLGGLMTDEAFVEWLPEGKIKKASPTRNREPPGSLKVLIPNPPKTSLWEDRYGAETDDTPRVSLLLALPRPLQLQRWGLFIQCENSLEFWSLLTNFRIRLLPMVAQLGVENLILTNARKVPKDYFGSHLFRKPSVLRGLLVEGLSQSG-DVRLPRVTVSKRLKIFLEDELDELFPRSQYERIIAHPQRKDETGRMTRMSDIKVNATDGS-----------PRRILLAVGPEGGWEEPYELDMFQKLGFKRITLGTRVLRTDVAV 354          
BLAST of mRNA_D-dudresnayi_contig9611.28394.1 vs. uniprot
Match: A0A482S6B4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6B4_9ARCH)

HSP 1 Score: 128 bits (321), Expect = 3.210e-33
Identity = 67/134 (50.00%), Postives = 96/134 (71.64%), Query Frame = 1
Query:   22 IIRRNLNRILFEQDEVHLTDDGC--YITHIPKEDNRVKHIEKILKLKVGDSLRTGILDLGMSNAATIE-DMVDGITINLGSKESIYTTPSPKIDLLLALPRPQKLEKLLPIISCLGVRNIFLVDACKVEKDYFG 414
            IIRRNLNR+L E++E+ + DD    ++T +  ED R KHI  ILKL   DS++ G+LD+G+++ + +  D  + + IN+G KE++  T  PK+ L+LA PRP +LE++LPI+SCLGVR + LV A KVEKDYFG
Sbjct:   31 IIRRNLNRVLLEENEL-VYDDSTKTHLTRLRPEDYRSKHIRSILKLNDKDSIKCGVLDVGINDKSQVYYDEGNAVVINVGKKENLIPTARPKVTLILATPRPLRLERILPIVSCLGVRKLVLVGAKKVEKDYFG 163          
BLAST of mRNA_D-dudresnayi_contig9611.28394.1 vs. uniprot
Match: D8LR28_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR28_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.470e-33
Identity = 108/341 (31.67%), Postives = 164/341 (48.09%), Query Frame = 1
Query:   16 RRIIRRNLNRILFEQDEVHLTDDGCYITHIPKEDNRVKHIEKILKLKVGDSLRTGILDLGMSNAATI--EDMVD------------------------GITINLGSKESIYTTP-----SPKIDLLLALPRPQKLEKLLPIISCLGVRNIFLVDACKVEKDYFGSHLLRNPAKMRQLLIEGLSQAEVDCTLPKVRVIRNLKEFLLNELNKELPLH---------------------------------SGYNNENGNYSDTITTNSTASNSSECASSA-------TPTTTPKS-------MLLAVGPEGGWLS-HEVSLFQQQHFQLVHLGNRILRTDIAV 801
            RR++ R LNRI+ E  EV   ++G     +P  D+R  H+  +LK++ G+S+R G+++ G  + A+I  E+  D                         + ++LG  +     P      PK+ L+LA+PRP +LE++LP+++ LGV  I L  A KV K YFGSH  R+P  +R+ LIEGLSQ+  D  +P+V V R LK FL ++L++  P                                    G   E G  + T  +       S+ A++A       +    PK        +L+AVGPEGGW+   E+ L Q   FQ V LG+R+LR+D+AV
Sbjct:   78 RRLVVRCLNRIMLEPSEVVRDEEGNLSATLPAADSRTAHVRGVLKVENGESVRVGVVNAGRMDDASIAWEEPTDPPEGAPPPDIPGRQKGRKSSPKWMDLVLDLGPSDRQLLKPVPDEQRPKVALMLAVPRPLQLERILPVVASLGVTTIVLCQAKKVPKFYFGSHFFRDPPSVREKLIEGLSQSG-DTVMPEVMVARRLKIFLEDDLDRCFPRDRWVRALAHPTRLPAQVSRCAGGEATAAATAAGGEGVGVEAGVVAATAQSGRVDGVESDGAATAPVPALRFSQIEPPKGCDPADVGVLVAVGPEGGWVEPDELQLLQSFGFQAVTLGSRVLRSDVAV 417          
BLAST of mRNA_D-dudresnayi_contig9611.28394.1 vs. uniprot
Match: R1F0S1_EMIHU (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F0S1_EMIHU)

HSP 1 Score: 130 bits (328), Expect = 8.830e-33
Identity = 99/281 (35.23%), Postives = 145/281 (51.60%), Query Frame = 1
Query:    1 LSALNRRIIRRNLNRILFEQDEVHLTDDGCYITHIPKEDNRVKHIEKILKLKVGDSLRTGILDLGMSNAATI------EDMVDGITINLGSKESIYTTPSPKIDLLLALPRPQKLEKLLPIISCLGVRNIFLVDACKVEKDYFGSHLLRNPAKMRQLLIEGLSQAEVDCTLPKVRVIRNLKEFLLNEL---NKELPLHSGYNNENGNYSDTITTNSTASNSSECASSATP----TTTPKSMLLAVGPEGGWLSH-EVSLFQQQHFQLVHLGNRILRTDIAV 801
            L+AL  R     LNR+L E  E     DG     +P +D R +H+  +L+ + G S+R G+LD G S+ AT+       D   G+ + LG    +     P+IDLLLA+PRP +  +LLP+++ LGV  +++  A K EK +F SHLLR     +Q L   L+    D  +P+V V R L+  L + L    + L  H       G  + T+    +   SS+ A  A        +   +LLAVGPEGGW    E+ L ++  F+ V LG+R LRTD+AV
Sbjct:   18 LAALRPRCAVACLNRLLLEPSEC--AGDGT--ATLPADDPRTQHVRVVLRARDGASIRAGVLDRGSSDEATVCWLPGGADDPPGLRLALGEPSRLRPAERPRIDLLLAMPRPLQFGRLLPMVASLGVGTVYVTAAAKTEKSFFSSHLLREDQAAQQQLRAALAG---DTAVPRVVVDRRLRSLLRDRLPQYGRRLVAHP---RREGRDARTVGEALSGLASSQAAIDAGEGQDGAGSGPRVLLAVGPEGGWDEPAELELLREHGFEEVTLGSRTLRTDVAV 288          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9611.28394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3HAL0_9STRA1.190e-6241.8816S rRNA (uracil(1498)-N(3))-methyltransferase (Fr... [more]
A0A1Z5JKH5_FISSO3.750e-3836.9716S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
B7FST2_PHATC4.760e-3835.0016S rRNA (uracil(1498)-N(3))-methyltransferase n=2... [more]
A0A7S4NPP0_GUITH2.910e-3739.2716S rRNA (uracil(1498)-N(3))-methyltransferase n=3... [more]
A0A4D9D2J3_9STRA3.230e-3734.0216S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A1Z5K163_FISSO4.780e-3735.9216S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
K0SJH0_THAOC3.090e-3533.9416S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A482S6B4_9ARCH3.210e-3350.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
D8LR28_ECTSI3.470e-3331.6716S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
R1F0S1_EMIHU8.830e-3335.2316S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9611contigD-dudresnayi_contig9611:4022..5473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue6.7e-33
Seed eggNOG ortholog2850.Phatr32846
EggNOG free text desc.RNA methyltransferase
EggNOG OGs2S21E@2759,2XDA5@2836,COG1385@1
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size801
Cds size801
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9611.28394.1prot_D-dudresnayi_contig9611.28394.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9611 4022..5473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930910.12546-CDS-D-dudresnayi_contig9611:4021..41621622930910.12546-CDS-D-dudresnayi_contig9611:4021..4162Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9611 4022..4162 +
1690557962.1866636-CDS-D-dudresnayi_contig9611:4021..41621690557962.1866636-CDS-D-dudresnayi_contig9611:4021..4162Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9611 4022..4162 +
1622930910.1462488-CDS-D-dudresnayi_contig9611:4257..45281622930910.1462488-CDS-D-dudresnayi_contig9611:4257..4528Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9611 4258..4528 +
1690557962.197441-CDS-D-dudresnayi_contig9611:4257..45281690557962.197441-CDS-D-dudresnayi_contig9611:4257..4528Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9611 4258..4528 +
1622930910.1643436-CDS-D-dudresnayi_contig9611:4754..49141622930910.1643436-CDS-D-dudresnayi_contig9611:4754..4914Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9611 4755..4914 +
1690557962.2066622-CDS-D-dudresnayi_contig9611:4754..49141690557962.2066622-CDS-D-dudresnayi_contig9611:4754..4914Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9611 4755..4914 +
1622930910.1890707-CDS-D-dudresnayi_contig9611:5244..54731622930910.1890707-CDS-D-dudresnayi_contig9611:5244..5473Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9611 5245..5473 +
1690557962.2212496-CDS-D-dudresnayi_contig9611:5244..54731690557962.2212496-CDS-D-dudresnayi_contig9611:5244..5473Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9611 5245..5473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9611.28394.1

>prot_D-dudresnayi_contig9611.28394.1 ID=prot_D-dudresnayi_contig9611.28394.1|Name=mRNA_D-dudresnayi_contig9611.28394.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=267bp
LSALNRRIIRRNLNRILFEQDEVHLTDDGCYITHIPKEDNRVKHIEKILK
LKVGDSLRTGILDLGMSNAATIEDMVDGITINLGSKESIYTTPSPKIDLL
LALPRPQKLEKLLPIISCLGVRNIFLVDACKVEKDYFGSHLLRNPAKMRQ
LLIEGLSQAEVDCTLPKVRVIRNLKEFLLNELNKELPLHSGYNNENGNYS
DTITTNSTASNSSECASSATPTTTPKSMLLAVGPEGGWLSHEVSLFQQQH
FQLVHLGNRILRTDIAV
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mRNA from alignment at D-dudresnayi_contig9611:4022..5473+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9611.28394.1 ID=mRNA_D-dudresnayi_contig9611.28394.1|Name=mRNA_D-dudresnayi_contig9611.28394.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1452bp|location=Sequence derived from alignment at D-dudresnayi_contig9611:4022..5473+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTATCTGCATTAAATCGAAGAATAATACGTCGTAACCTCAATCGAATTTT GTTCGAACAGGATGAGGTCCACTTAACTGACGATGGATGTTATATTACAC ATATACCAAAAGAAGATAACCGTGTAAAACATATTGAAAAGGTAAATATA TAATATGACTTCTATTTACTTATATATTTTGGCATCTTGCTGTATATACA TTTACATCATGCATGTAATTTATTTATATAATACAGATTTTAAAACTGAA AGTAGGTGATTCTTTAAGAACTGGTATACTCGATCTTGGTATGTCTAATG CTGCCACCATAGAAGATATGGTCGATGGAATAACTATCAATCTAGGAAGT AAAGAGAGTATATATACCACCCCTTCTCCTAAGATCGATCTGCTATTAGC ATTACCACGACCACAAAAATTAGAAAAGTTATTACCTATCATAAGCTGTC TTGGGGTACGGAATATATTCCTTGTTGATGCTTGTAAAGTAGAGAAGGAT TACTTTGGTAAGTTGGAATACAATGAAATTTGTATATTATATATGATATT ATTATATATGATATAGCAGTACGATATGCATGTAATGTATATTGTATACA TGTATTGTATGCATATTGTACTGTTATTATTATTTTCAATCTATGATTAT GTTTTAATCTATAAAGTATTATTTCATTATACTACACTTATAACGTTATA TATACACTTATTTATACTATCTGTATATGATAGGCTCTCATCTACTCCGA AATCCTGCCAAAATGCGTCAATTATTAATTGAAGGCCTCTCTCAAGCCGA AGTAGACTGTACCCTACCAAAAGTCCGCGTTATACGCAACCTGAAGGAGT TTTTATTAAATGAATTAAATAAAGAATTGCCCCTACATTCAGGGTATCGG CTTATTGCACACCCTCCTATACAAAAATATAATCTACATAAACTATCTAA TACTACTATTAGTAGTAGTAGTAGTACTGTTGGTAGTACTAGTAACAGCC ATAATGGTCGTTCTTACCATCATAATAGTGAAAAAATAAATAATTTAATG GATGAAATGACTATTGATAATGAAGAAAATAATGAGAAAATAGGCACTTC AGAGAGTAAAATAGGCTATGTACATAGTATGAATTCATTACGATTCTCTG AATATACAGATTTACTCCTATCCGAACAACCTACTATATCTATTAATACT AATATGATAATTAATAAGAATAGTTATAATAATGAGAATGGTAATTATTC TGATACTATAACAACTAATTCTACTGCTAGTAATAGTAGTGAATGTGCTA GTAGCGCTACCCCTACTACTACCCCTAAGAGTATGCTCCTGGCCGTGGGC CCCGAGGGCGGCTGGCTGTCCCACGAAGTCTCGCTCTTCCAGCAGCAGCA CTTCCAGCTCGTGCATCTCGGAAACCGGATCCTTCGCACTGACATTGCGG TA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9611:4022..5473+

>mRNA_D-dudresnayi_contig9611.28394.1 ID=mRNA_D-dudresnayi_contig9611.28394.1|Name=mRNA_D-dudresnayi_contig9611.28394.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at D-dudresnayi_contig9611:4022..5473+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTATCTGCATTAAATCGAAGAATAATACGTCGTAACCTCAATCGAATTTT
GTTCGAACAGGATGAGGTCCACTTAACTGACGATGGATGTTATATTACAC
ATATACCAAAAGAAGATAACCGTGTAAAACATATTGAAAAGTTATCTGCA
TTAAATCGAAGAATAATACGTCGTAACCTCAATCGAATTTTGTTCGAACA
GGATGAGGTCCACTTAACTGACGATGGATGTTATATTACACATATACCAA
AAGAAGATAACCGTGTAAAACATATTGAAAAGATTTTAAAACTGAAAGTA
GGTGATTCTTTAAGAACTGGTATACTCGATCTTGGTATGTCTAATGCTGC
CACCATAGAAGATATGGTCGATGGAATAACTATCAATCTAGGAAGTAAAG
AGAGTATATATACCACCCCTTCTCCTAAGATCGATCTGCTATTAGCATTA
CCACGACCACAAAAATTAGAAAAGTTATTACCTATCATAAGCTGTCTTGG
GGTACGGAATATATTCCTTGTTGATGCTTGTAAAGTAGAGAAGGATTACT
TTGATTTTAAAACTGAAAGTAGGTGATTCTTTAAGAACTGGTATACTCGA
TCTTGGTATGTCTAATGCTGCCACCATAGAAGATATGGTCGATGGAATAA
CTATCAATCTAGGAAGTAAAGAGAGTATATATACCACCCCTTCTCCTAAG
ATCGATCTGCTATTAGCATTACCACGACCACAAAAATTAGAAAAGTTATT
ACCTATCATAAGCTGTCTTGGGGTACGGAATATATTCCTTGTTGATGCTT
GTAAAGTAGAGAAGGATTACTTTGGCTCTCATCTACTCCGAAATCCTGCC
AAAATGCGTCAATTATTAATTGAAGGCCTCTCTCAAGCCGAAGTAGACTG
TACCCTACCAAAAGTCCGCGTTATACGCAACCTGAAGGAGTTTTTATTAA
ATGAATTAAATAAAGAATTGCCCCTACATTCAGGGCTCTCATCTACTCCG
AAATCCTGCCAAAATGCGTCAATTATTAATTGAAGGCCTCTCTCAAGCCG
AAGTAGACTGTACCCTACCAAAAGTCCGCGTTATACGCAACCTGAAGGAG
TTTTTATTAAATGAATTAAATAAAGAATTGCCCCTACATTCAGGTTATAA
TAATGAGAATGGTAATTATTCTGATACTATAACAACTAATTCTACTGCTA
GTAATAGTAGTGAATGTGCTAGTAGCGCTACCCCTACTACTACCCCTAAG
AGTATGCTCCTGGCCGTGGGCCCCGAGGGCGGCTGGCTGTCCCACGAAGT
CTCGCTCTTCCAGCAGCAGCACTTCCAGCTCGTGCATCTCGGAAACCGGA
TCCTTCGCACTGACATTGCGGTATTATAATAATGAGAATGGTAATTATTC
TGATACTATAACAACTAATTCTACTGCTAGTAATAGTAGTGAATGTGCTA
GTAGCGCTACCCCTACTACTACCCCTAAGAGTATGCTCCTGGCCGTGGGC
CCCGAGGGCGGCTGGCTGTCCCACGAAGTCTCGCTCTTCCAGCAGCAGCA
CTTCCAGCTCGTGCATCTCGGAAACCGGATCCTTCGCACTGACATTGCGG
TA
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