mRNA_D-dudresnayi_contig9610.28393.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9610.28393.1
Unique NamemRNA_D-dudresnayi_contig9610.28393.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9610.28393.1 vs. uniprot
Match: A0A7S3LZF3_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZF3_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.530e-42
Identity = 99/207 (47.83%), Postives = 128/207 (61.84%), Query Frame = 1 
Query:    1 YVGESGVEVKARNSHSLSIIQAGTS---SYLVLYGGASPEHGPLSDTLYALLPDPSSIDMKSIYVKWEELDPTAPTGTAQPDSSQPDATVFTKSTETATAAAEGNPTTARTHPGCREMHGTCSYNGRMYISGGRNGDGAILSDVWELSASTMPSTVDIAHKEETPENIMSTV---------PVVLQWKRCKELELTSPRCAHGAAIV 585
            YVGE+G EV ARNSHS+ II   ++   SYLV+YGGASPEHGPL DTLYA LP+ ++ID  +++V+W+ L  T P  +A    S P+ TVF ++T TA        T     PG REMHGT  ++G+MYISGGR+     LSDVW LS + +P      H+EE+     S V            + W+RC ELEL +PRCAHG+AIV
Sbjct:  128 YVGEAGAEVIARNSHSMGIISDYSTPPRSYLVVYGGASPEHGPLGDTLYAELPELAAIDPAAVFVEWKVLPTTGPALSAH---STPE-TVFARTTATAA-------TVTLPQPGAREMHGTACFDGKMYISGGRDEAQNNLSDVWVLSYTPLPR-----HREESKTQSESKVGDSEADESHTGTIHWQRCVELELPAPRCAHGSAIV 318
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BLAST of mRNA_D-dudresnayi_contig9610.28393.1 vs. uniprot
Match: A0A482S096_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S096_9ARCH)

HSP 1 Score: 63.2 bits (152), Expect = 2.500e-9
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 YVGESGVEVKARNSHSLSIIQAGTSSY---LVLYGGASPEHGPLSDTLYALLPDPSSI 165
            YVGE G+E+ ARN+HS  +++   +S    +V++GGASPEHGPL D  YALLP   SI
Sbjct:   44 YVGEKGIEIPARNAHSKCVLRNRNNSEDGAMVIFGGASPEHGPLGDAYYALLPPVESI 101
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9610.28393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3LZF3_9STRA1.530e-4247.83Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A482S096_9ARCH2.500e-953.45Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9610contigD-dudresnayi_contig9610:1745..2606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size766
Cds size762
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.965465-CDS-D-dudresnayi_contig9610:1744..19101622930909.965465-CDS-D-dudresnayi_contig9610:1744..1910Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9610 1745..1910 +
1690557962.1113958-CDS-D-dudresnayi_contig9610:1744..19101690557962.1113958-CDS-D-dudresnayi_contig9610:1744..1910Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9610 1745..1910 +
1622930909.9792461-CDS-D-dudresnayi_contig9610:2008..26041622930909.9792461-CDS-D-dudresnayi_contig9610:2008..2604Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9610 2009..2604 +
1690557962.1227658-CDS-D-dudresnayi_contig9610:2008..26041690557962.1227658-CDS-D-dudresnayi_contig9610:2008..2604Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9610 2009..2604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9610.28393.1prot_D-dudresnayi_contig9610.28393.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9610 1745..2604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9610.28393.1

>prot_D-dudresnayi_contig9610.28393.1 ID=prot_D-dudresnayi_contig9610.28393.1|Name=mRNA_D-dudresnayi_contig9610.28393.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=254bp
YVGESGVEVKARNSHSLSIIQAGTSSYLVLYGGASPEHGPLSDTLYALLP
DPSSIDMKSIYVKWEELDPTAPTGTAQPDSSQPDATVFTKSTETATAAAE
GNPTTARTHPGCREMHGTCSYNGRMYISGGRNGDGAILSDVWELSASTMP
STVDIAHKEETPENIMSTVPVVLQWKRCKELELTSPRCAHGAAIVSTLSS
ITVPVVQQSAGISKSSPSDINNISSSMNQTDAMSVKMVLIGGFTPAGVSG
DVIC
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mRNA from alignment at D-dudresnayi_contig9610:1745..2606+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9610.28393.1 ID=mRNA_D-dudresnayi_contig9610.28393.1|Name=mRNA_D-dudresnayi_contig9610.28393.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=862bp|location=Sequence derived from alignment at D-dudresnayi_contig9610:1745..2606+ (Desmarestia dudresnayi DdudBR16 monoicous)
TATGTTGGAGAGTCCGGTGTTGAAGTGAAAGCTCGCAACTCTCACAGTCT
GAGTATCATACAGGCTGGTACTTCCAGCTACCTAGTGCTATATGGCGGGG
CTTCTCCTGAACACGGGCCTCTCAGTGATACTCTCTATGCGCTCCTACCT
GACCCCTCTTCTATAGGTACTATAACCTCCACTACCTACACATACAGTAC
TATGCATTCCTGCTTGGAGTAGTACCATTTGCATCTTATCTATACTATTA
TGCTTTATATGCAGATATGAAGTCGATTTATGTGAAATGGGAAGAGCTTG
ACCCAACGGCGCCTACCGGTACTGCTCAACCGGACTCTTCCCAGCCGGAT
GCTACCGTCTTTACCAAGTCCACTGAGACTGCAACAGCAGCAGCTGAAGG
TAATCCCACTACCGCACGTACTCATCCTGGTTGTAGAGAGATGCATGGTA
CTTGTAGCTATAATGGTAGGATGTACATCAGTGGAGGGAGGAATGGCGAC
GGGGCGATCTTGTCAGATGTGTGGGAATTATCTGCGTCCACTATGCCTTC
AACAGTAGATATTGCGCATAAAGAAGAAACACCTGAGAATATAATGTCTA
CTGTACCGGTAGTGTTACAATGGAAGCGGTGTAAGGAGTTAGAACTGACT
TCACCACGCTGTGCCCATGGTGCTGCGATTGTATCTACTCTGTCTTCTAT
TACTGTACCAGTAGTACAGCAGTCTGCTGGAATAAGTAAATCGTCTCCTT
CCGACATCAACAACATTAGTAGTAGTATGAACCAGACAGATGCAATGAGT
GTGAAAATGGTGCTAATTGGAGGATTTACGCCTGCTGGTGTGTCTGGTGA
TGTTATCTGTGC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9610:1745..2606+

>mRNA_D-dudresnayi_contig9610.28393.1 ID=mRNA_D-dudresnayi_contig9610.28393.1|Name=mRNA_D-dudresnayi_contig9610.28393.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at D-dudresnayi_contig9610:1745..2606+ (Desmarestia dudresnayi DdudBR16 monoicous)
TATGTTGGAGAGTCCGGTGTTGAAGTGAAAGCTCGCAACTCTCACAGTCT
GAGTATCATACAGGCTGGTACTTCCAGCTACCTAGTGCTATATGGCGGGG
CTTCTCCTGAACACGGGCCTCTCAGTGATACTCTCTATGCGCTCCTACCT
GACCCCTCTTCTATAGTATGTTGGAGAGTCCGGTGTTGAAGTGAAAGCTC
GCAACTCTCACAGTCTGAGTATCATACAGGCTGGTACTTCCAGCTACCTA
GTGCTATATGGCGGGGCTTCTCCTGAACACGGGCCTCTCAGTGATACTCT
CTATGCGCTCCTACCTGACCCCTCTTCTATAGATATGAAGTCGATTTATG
TGAAATGGGAAGAGCTTGACCCAACGGCGCCTACCGGTACTGCTCAACCG
GACTCTTCCCAGCCGGATGCTACCGTCTTTACCAAGTCCACTGAGACTGC
AACAGCAGCAGCTGAAGGTAATCCCACTACCGCACGTACTCATCCTGGTT
GTAGAGAGATGCATGGTACTTGTAGCTATAATGGTAGGATGTACATCAGT
GGAGGGAGGAATGGCGACGGGGCGATCTTGTCAGATGTGTGGGAATTATC
TGCGTCCACTATGCCTTCAACAGTAGATATTGCGCATAAAGAAGAAACAC
CTGAGAATATAATGTCTACTGTACCGGTAGTGTTACAATGGAAGCGGTGT
AAGGAGTTAGAACTGACTTCACCACGCTGTGCCCATGGTGCTGCGATTGT
ATCTACTCTGTCTTCTATTACTGTACCAGTAGTACAGCAGTCTGCTGGAA
TAAGTAAATCGTCTCCTTCCGACATCAACAACATTAGTAGTAGTATGAAC
CAGACAGATGCAATGAGTGTGAAAATGGTGCTAATTGGAGGATTTACGCC
TGCTGGTGTGTCTGGTGATGTTATCTGTATATGAAGTCGATTTATGTGAA
ATGGGAAGAGCTTGACCCAACGGCGCCTACCGGTACTGCTCAACCGGACT
CTTCCCAGCCGGATGCTACCGTCTTTACCAAGTCCACTGAGACTGCAACA
GCAGCAGCTGAAGGTAATCCCACTACCGCACGTACTCATCCTGGTTGTAG
AGAGATGCATGGTACTTGTAGCTATAATGGTAGGATGTACATCAGTGGAG
GGAGGAATGGCGACGGGGCGATCTTGTCAGATGTGTGGGAATTATCTGCG
TCCACTATGCCTTCAACAGTAGATATTGCGCATAAAGAAGAAACACCTGA
GAATATAATGTCTACTGTACCGGTAGTGTTACAATGGAAGCGGTGTAAGG
AGTTAGAACTGACTTCACCACGCTGTGCCCATGGTGCTGCGATTGTATCT
ACTCTGTCTTCTATTACTGTACCAGTAGTACAGCAGTCTGCTGGAATAAG
TAAATCGTCTCCTTCCGACATCAACAACATTAGTAGTAGTATGAACCAGA
CAGATGCAATGAGTGTGAAAATGGTGCTAATTGGAGGATTTACGCCTGCT
GGTGTGTCTGGTGATGTTATCTGT
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