mRNA_D-dudresnayi_contig9610.28392.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9610.28392.1
Unique NamemRNA_D-dudresnayi_contig9610.28392.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9610.28392.1 vs. uniprot
Match: A0A7S3LZF3_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZF3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.190e-25
Identity = 48/79 (60.76%), Postives = 63/79 (79.75%), Query Frame = 3 
Query:   15 TMSCIVTKLHSVVKDFSPRGGSSIVEVEGKIIVFGGADREQTHFQDIMAYGGNSGSNFCVVKASGDVPMPRSGHAVAAY 251
            TM+  VTKLH+ +K+FS RGG+S+VEV  K+++FGGADR+QTHFQD+  Y   + S F  V+A+GDVPMPRSGH+V AY
Sbjct:   17 TMTSCVTKLHTSIKEFSERGGASLVEVNAKLLIFGGADRQQTHFQDLAVYNSAADSLFVTVRATGDVPMPRSGHSVVAY 95
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9610.28392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3LZF3_9STRA6.190e-2560.76Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9610contigD-dudresnayi_contig9610:1234..1553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-08_002460.1
Exons2
Model size253
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9610.28392.1prot_D-dudresnayi_contig9610.28392.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9610 1251..1553 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930910.0272832-UTR-D-dudresnayi_contig9610:1233..12501622930910.0272832-UTR-D-dudresnayi_contig9610:1233..1250Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9610 1234..1250 +
1690557962.138615-UTR-D-dudresnayi_contig9610:1233..12501690557962.138615-UTR-D-dudresnayi_contig9610:1233..1250Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9610 1234..1250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930910.0470479-CDS-D-dudresnayi_contig9610:1250..13251622930910.0470479-CDS-D-dudresnayi_contig9610:1250..1325Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9610 1251..1325 +
1690557962.1497605-CDS-D-dudresnayi_contig9610:1250..13251690557962.1497605-CDS-D-dudresnayi_contig9610:1250..1325Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9610 1251..1325 +
1622930910.063855-CDS-D-dudresnayi_contig9610:1394..15531622930910.063855-CDS-D-dudresnayi_contig9610:1394..1553Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9610 1395..1553 +
1690557962.1706686-CDS-D-dudresnayi_contig9610:1394..15531690557962.1706686-CDS-D-dudresnayi_contig9610:1394..1553Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9610 1395..1553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9610.28392.1

>prot_D-dudresnayi_contig9610.28392.1 ID=prot_D-dudresnayi_contig9610.28392.1|Name=mRNA_D-dudresnayi_contig9610.28392.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=78bp
MSCIVTKLHSVVKDFSPRGGSSIVEVEGKIIVFGGADREQTHFQDIMAYG
GNSGSNFCVVKASGDVPMPRSGHAVAAY
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mRNA from alignment at D-dudresnayi_contig9610:1234..1553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9610.28392.1 ID=mRNA_D-dudresnayi_contig9610.28392.1|Name=mRNA_D-dudresnayi_contig9610.28392.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=320bp|location=Sequence derived from alignment at D-dudresnayi_contig9610:1234..1553+ (Desmarestia dudresnayi DdudBR16 monoicous)
TATTGACTGAGTTTACAATGTCTTGTATAGTAACTAAGCTACACTCTGTA
GTAAAAGACTTTTCACCTCGAGGGGGGTCCTCTATTGTTGAGGTTTGCTG
TTTTTATCTTTATAAGTTTTGAAGTTTTTTGAATATCACAAGCACTATGA
TATCACTATAGGTTGAGGGAAAGATTATAGTATTCGGAGGAGCAGATCGA
GAACAGACACACTTTCAAGATATTATGGCTTATGGTGGTAATTCTGGATC
TAACTTTTGTGTCGTTAAAGCTTCTGGAGATGTTCCAATGCCTAGAAGTG
GGCATGCAGTGGCTGCGTAT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9610:1234..1553+

>mRNA_D-dudresnayi_contig9610.28392.1 ID=mRNA_D-dudresnayi_contig9610.28392.1|Name=mRNA_D-dudresnayi_contig9610.28392.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at D-dudresnayi_contig9610:1234..1553+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCTTGTATAGTAACTAAGCTACACTCTGTAGTAAAAGACTTTTCACC
TCGAGGGGGGTCCTCTATTGTTGAGATGTCTTGTATAGTAACTAAGCTAC
ACTCTGTAGTAAAAGACTTTTCACCTCGAGGGGGGTCCTCTATTGTTGAG
GTTGAGGGAAAGATTATAGTATTCGGAGGAGCAGATCGAGAACAGACACA
CTTTCAAGATATTATGGCTTATGGTGGTAATTCTGGATCTAACTTTTGTG
TCGTTAAAGCTTCTGGAGATGTTCCAATGCCTAGAAGTGGGCATGCAGTG
GCTGCGTATGTTGAGGGAAAGATTATAGTATTCGGAGGAGCAGATCGAGA
ACAGACACACTTTCAAGATATTATGGCTTATGGTGGTAATTCTGGATCTA
ACTTTTGTGTCGTTAAAGCTTCTGGAGATGTTCCAATGCCTAGAAGTGGG
CATGCAGTGGCTGCGTAT
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