mRNA_D-dudresnayi_contig9603.28387.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9603.28387.1
Unique NamemRNA_D-dudresnayi_contig9603.28387.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9603.28387.1 vs. uniprot
Match: A0A6H5L0C5_9PHAE (VASt domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0C5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.960e-20
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 2 
Query:   77 ESLWETLDILRDKGYHGAKTCLAMASFLSERAAVENAYGEALIKAAKRAAKGARPGGGNTWG 262
            ESLWE +D++RD G HGAK+C+ MA+FLSERAA+E  YG ALIKAAKRA+KGARPG GN WG
Sbjct:    7 ESLWEKVDVVRDSGQHGAKSCIGMANFLSERAAIETTYGNALIKAAKRASKGARPG-GNAWG 67
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9603.28387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0C5_9PHAE1.960e-2072.58VASt domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9603contigD-dudresnayi_contig9603:6346..6774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size272
Cds size228
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9603.28387.1prot_D-dudresnayi_contig9603.28387.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9603 6389..6774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.2264533-UTR-D-dudresnayi_contig9603:6345..63881622930909.2264533-UTR-D-dudresnayi_contig9603:6345..6388Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9603 6346..6388 +
1690557961.7335923-UTR-D-dudresnayi_contig9603:6345..63881690557961.7335923-UTR-D-dudresnayi_contig9603:6345..6388Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9603 6346..6388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.2419999-CDS-D-dudresnayi_contig9603:6388..65411622930909.2419999-CDS-D-dudresnayi_contig9603:6388..6541Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9603 6389..6541 +
1690557961.7465115-CDS-D-dudresnayi_contig9603:6388..65411690557961.7465115-CDS-D-dudresnayi_contig9603:6388..6541Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9603 6389..6541 +
1622930909.2564516-CDS-D-dudresnayi_contig9603:6699..67741622930909.2564516-CDS-D-dudresnayi_contig9603:6699..6774Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9603 6700..6774 +
1690557961.7553372-CDS-D-dudresnayi_contig9603:6699..67741690557961.7553372-CDS-D-dudresnayi_contig9603:6699..6774Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9603 6700..6774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9603.28387.1

>prot_D-dudresnayi_contig9603.28387.1 ID=prot_D-dudresnayi_contig9603.28387.1|Name=mRNA_D-dudresnayi_contig9603.28387.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=76bp
MAMDAAHISRGESLWETLDILRDKGYHGAKTCLAMASFLSERAAVENAYG
EALIKAAKRAAKGARPGGGNTWGQSA
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mRNA from alignment at D-dudresnayi_contig9603:6346..6774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9603.28387.1 ID=mRNA_D-dudresnayi_contig9603.28387.1|Name=mRNA_D-dudresnayi_contig9603.28387.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=429bp|location=Sequence derived from alignment at D-dudresnayi_contig9603:6346..6774+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTTTAAGGTGTTGAGCTTGCCAGGGAGGTGAGGGAGGCCTCTAATGGCCA
TGGACGCCGCACATATATCTCGTGGAGAGAGTCTGTGGGAGACGCTGGAC
ATTCTACGAGATAAAGGGTATCATGGCGCCAAAACGTGCTTGGCGATGGC
GTCGTTCCTCAGTGAGCGTGCTGCGGTGGAAAACGCGTACGGCGAGGTGT
GATTATGGTCGAAACATGAAAGTTCTGTGCTACAGGAGATATCGACGGAG
CTACACGCACAGAGAGAACATAAATACCACCCAATACGTGCATAACAAAA
AACGTACCAACCGCAACATGCCAGCACATATCGTGTGTCCTATTCCCAGT
GCAGGCGCTGATCAAGGCAGCGAAGAGAGCGGCGAAAGGTGCCAGGCCTG
GGGGAGGTAACACTTGGGGGCAGTCGGCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9603:6346..6774+

>mRNA_D-dudresnayi_contig9603.28387.1 ID=mRNA_D-dudresnayi_contig9603.28387.1|Name=mRNA_D-dudresnayi_contig9603.28387.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at D-dudresnayi_contig9603:6346..6774+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCCATGGACGCCGCACATATATCTCGTGGAGAGAGTCTGTGGGAGAC
GCTGGACATTCTACGAGATAAAGGGTATCATGGCGCCAAAACGTGCTTGG
CGATGGCGTCGTTCCTCAGTGAGCGTGCTGCGGTGGAAAACGCGTACGGC
GAGATGGCCATGGACGCCGCACATATATCTCGTGGAGAGAGTCTGTGGGA
GACGCTGGACATTCTACGAGATAAAGGGTATCATGGCGCCAAAACGTGCT
TGGCGATGGCGTCGTTCCTCAGTGAGCGTGCTGCGGTGGAAAACGCGTAC
GGCGAGGCGCTGATCAAGGCAGCGAAGAGAGCGGCGAAAGGTGCCAGGCC
TGGGGGAGGTAACACTTGGGGGCAGTCGGCGGCGCTGATCAAGGCAGCGA
AGAGAGCGGCGAAAGGTGCCAGGCCTGGGGGAGGTAACACTTGGGGGCAG
TCGGCG
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