mRNA_D-dudresnayi_contig9589.28378.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9589.28378.1
Unique NamemRNA_D-dudresnayi_contig9589.28378.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9589.28378.1 vs. uniprot
Match: A0A482RSS7_9ARCH (BSD domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSS7_9ARCH)

HSP 1 Score: 58.2 bits (139), Expect = 4.330e-9
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    4 IASVLDQESEVSRFYAELVPISISPEEFWGRLFFRMSLVYRHGTGLDEE 150
            + +VLD ESEVSRFYAELVP+ +S E FW R FFR+ L+ R G    EE
Sbjct:   11 LQAVLDAESEVSRFYAELVPLQLSAEVFWARYFFRLKLLTRLGRVNFEE 59
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9589.28378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A482RSS7_9ARCH4.330e-959.18BSD domain-containing protein (Fragment) n=1 Tax=a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9589contigD-dudresnayi_contig9589:10999..11441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930907.4599185-CDS-D-dudresnayi_contig9589:11000..112471622930907.4599185-CDS-D-dudresnayi_contig9589:11000..11247Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9589 11001..11247 -
1690557960.969398-CDS-D-dudresnayi_contig9589:11000..112471690557960.969398-CDS-D-dudresnayi_contig9589:11000..11247Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9589 11001..11247 -
1622930907.479027-CDS-D-dudresnayi_contig9589:11346..114411622930907.479027-CDS-D-dudresnayi_contig9589:11346..11441Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9589 11347..11441 -
1690557960.980049-CDS-D-dudresnayi_contig9589:11346..114411690557960.980049-CDS-D-dudresnayi_contig9589:11346..11441Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9589 11347..11441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9589.28378.1prot_D-dudresnayi_contig9589.28378.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9589 11001..11441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9589.28378.1

>prot_D-dudresnayi_contig9589.28378.1 ID=prot_D-dudresnayi_contig9589.28378.1|Name=mRNA_D-dudresnayi_contig9589.28378.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=114bp
EIASVLDQESEVSRFYAELVPISISPEEFWGRLFFRMSLVYRHGTGLDEE
DDEELVWEEEEEVIPEKAVTSADNNTQHATTSTTTGTAQCNHSSQTTTIH
TSHEGTNTTIPVND
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mRNA from alignment at D-dudresnayi_contig9589:10999..11441-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9589.28378.1 ID=mRNA_D-dudresnayi_contig9589.28378.1|Name=mRNA_D-dudresnayi_contig9589.28378.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=443bp|location=Sequence derived from alignment at D-dudresnayi_contig9589:10999..11441- (Desmarestia dudresnayi DdudBR16 monoicous)
GAGATCGCCTCAGTGCTCGATCAAGAATCTGAAGTTTCTCGATTTTATGC
GGAATTAGTTCCTATTTCAATATCACCAGAAGAATTTTGGGGAAGGTATA
TATTTTATATGTTTGAGAACTGTTGTATTTTGAGCTCTCATGTTTGATTG
CTGACTTTTACTCATGAATATTCTGCATGCTGTTCCTTTTTCAGACTGTT
CTTCCGTATGAGTTTAGTATACAGACATGGCACTGGACTGGATGAGGAGG
ATGACGAGGAACTGGTGTGGGAAGAGGAAGAGGAGGTTATACCCGAGAAG
GCAGTCACTAGTGCTGATAACAATACACAACACGCTACTACTAGTACTAC
TACCGGTACTGCACAATGCAACCACAGCTCCCAAACAACCACAATCCACA
CCTCCCACGAAGGGACCAACACTACTATCCCCGTCAACGACCA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9589:10999..11441-

>mRNA_D-dudresnayi_contig9589.28378.1 ID=mRNA_D-dudresnayi_contig9589.28378.1|Name=mRNA_D-dudresnayi_contig9589.28378.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at D-dudresnayi_contig9589:10999..11441- (Desmarestia dudresnayi DdudBR16 monoicous)
GAGATCGCCTCAGTGCTCGATCAAGAATCTGAAGTTTCTCGATTTTATGC
GGAATTAGTTCCTATTTCAATATCACCAGAAGAATTTTGGGGAAGGAGAT
CGCCTCAGTGCTCGATCAAGAATCTGAAGTTTCTCGATTTTATGCGGAAT
TAGTTCCTATTTCAATATCACCAGAAGAATTTTGGGGAAGACTGTTCTTC
CGTATGAGTTTAGTATACAGACATGGCACTGGACTGGATGAGGAGGATGA
CGAGGAACTGGTGTGGGAAGAGGAAGAGGAGGTTATACCCGAGAAGGCAG
TCACTAGTGCTGATAACAATACACAACACGCTACTACTAGTACTACTACC
GGTACTGCACAATGCAACCACAGCTCCCAAACAACCACAATCCACACCTC
CCACGAAGGGACCAACACTACTATCCCCGTCAACGACACTGTTCTTCCGT
ATGAGTTTAGTATACAGACATGGCACTGGACTGGATGAGGAGGATGACGA
GGAACTGGTGTGGGAAGAGGAAGAGGAGGTTATACCCGAGAAGGCAGTCA
CTAGTGCTGATAACAATACACAACACGCTACTACTAGTACTACTACCGGT
ACTGCACAATGCAACCACAGCTCCCAAACAACCACAATCCACACCTCCCA
CGAAGGGACCAACACTACTATCCCCGTCAACGAC
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