mRNA_D-dudresnayi_contig9589.28377.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9589.28377.1
Unique NamemRNA_D-dudresnayi_contig9589.28377.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9589.28377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9589contigD-dudresnayi_contig9589:4715..5672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size958
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9589.28377.1prot_D-dudresnayi_contig9589.28377.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9589 4790..5542 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930907.5291512-UTR-D-dudresnayi_contig9589:4714..47891622930907.5291512-UTR-D-dudresnayi_contig9589:4714..4789Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9589 4715..4789 +
1690557960.9908166-UTR-D-dudresnayi_contig9589:4714..47891690557960.9908166-UTR-D-dudresnayi_contig9589:4714..4789Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9589 4715..4789 +
1622930907.5682833-UTR-D-dudresnayi_contig9589:5542..56721622930907.5682833-UTR-D-dudresnayi_contig9589:5542..5672Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9589 5543..5672 +
1690557961.0116012-UTR-D-dudresnayi_contig9589:5542..56721690557961.0116012-UTR-D-dudresnayi_contig9589:5542..5672Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9589 5543..5672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930907.5500615-CDS-D-dudresnayi_contig9589:4789..55421622930907.5500615-CDS-D-dudresnayi_contig9589:4789..5542Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9589 4790..5542 +
1690557961.0011482-CDS-D-dudresnayi_contig9589:4789..55421690557961.0011482-CDS-D-dudresnayi_contig9589:4789..5542Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9589 4790..5542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9589.28377.1

>prot_D-dudresnayi_contig9589.28377.1 ID=prot_D-dudresnayi_contig9589.28377.1|Name=mRNA_D-dudresnayi_contig9589.28377.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=251bp
MTQFYLFLIVLLAVGFVYTTADSSPILSFYSNITISGVTQAELSVEGKDV
VALTAATVMNLPSGTVSYIGTISSTTTNRKLKITTEDVTYTIISRVFTQV
TLSQTTYTSVDSLYTAATTELINQVNNNQFTNTLQAEANSSNVPELTNAQ
ATSVDSSAASVNYDSASKAGLNEGAVAGIVISVLFVAAVVASCAYRRYKA
SSLSQAGPNGTKGYVLNEDDEEIAIDNPVLSYTTTSQDDDPHTQIHHFHL
*
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mRNA from alignment at D-dudresnayi_contig9589:4715..5672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9589.28377.1 ID=mRNA_D-dudresnayi_contig9589.28377.1|Name=mRNA_D-dudresnayi_contig9589.28377.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=958bp|location=Sequence derived from alignment at D-dudresnayi_contig9589:4715..5672+ (Desmarestia dudresnayi DdudBR16 monoicous)
AATTGCTTTTTTTCTATATAGACCTTATACAAATAATTTGCTGGATTCTT
ATTAAGTCTTGTTTTACTGATAAAAATGACTCAATTTTATCTGTTCCTGA
TTGTCTTGCTGGCAGTTGGTTTTGTGTACACAACTGCCGATTCATCTCCA
ATCCTGTCATTTTATTCTAACATAACTATTTCTGGTGTAACACAAGCTGA
GTTAAGTGTAGAAGGAAAGGATGTGGTAGCCTTAACAGCGGCTACAGTAA
TGAATCTACCCAGCGGCACTGTCAGTTACATCGGAACAATTTCAAGCACC
ACCACCAATCGAAAGCTTAAGATTACCACAGAGGATGTTACTTATACTAT
CATTTCTAGAGTATTTACTCAGGTTACACTTTCTCAAACAACATACACAT
CGGTGGATTCCCTATACACGGCAGCCACCACTGAACTCATCAATCAAGTG
AATAATAACCAATTTACTAATACATTACAAGCTGAGGCTAATAGTAGCAA
CGTCCCCGAATTAACTAATGCACAAGCTACATCTGTAGACTCATCAGCAG
CAAGTGTGAACTATGATAGTGCATCGAAAGCAGGTCTAAATGAAGGTGCT
GTGGCCGGTATTGTTATATCCGTTCTCTTCGTAGCTGCAGTGGTCGCTAG
CTGTGCATATAGACGCTATAAAGCAAGTAGTCTAAGCCAAGCGGGACCCA
ATGGTACCAAAGGTTATGTACTCAATGAAGATGACGAGGAGATCGCAATA
GATAATCCGGTGCTTAGCTACACTACTACTAGTCAGGATGACGACCCACA
CACTCAGATTCACCACTTTCATTTATAAGTTACTATGTAGTATGTGTTGA
TGGTACTATATAGACATAGAGAAGATAAAGGTATATAGGAATATACAGTA
CTGATATATAAATCCCGGGAATAATGTGTAAACTCATCTATTACTGGGAA
TATACCTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9589:4715..5672+

>mRNA_D-dudresnayi_contig9589.28377.1 ID=mRNA_D-dudresnayi_contig9589.28377.1|Name=mRNA_D-dudresnayi_contig9589.28377.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at D-dudresnayi_contig9589:4715..5672+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACTCAATTTTATCTGTTCCTGATTGTCTTGCTGGCAGTTGGTTTTGT
GTACACAACTGCCGATTCATCTCCAATCCTGTCATTTTATTCTAACATAA
CTATTTCTGGTGTAACACAAGCTGAGTTAAGTGTAGAAGGAAAGGATGTG
GTAGCCTTAACAGCGGCTACAGTAATGAATCTACCCAGCGGCACTGTCAG
TTACATCGGAACAATTTCAAGCACCACCACCAATCGAAAGCTTAAGATTA
CCACAGAGGATGTTACTTATACTATCATTTCTAGAGTATTTACTCAGGTT
ACACTTTCTCAAACAACATACACATCGGTGGATTCCCTATACACGGCAGC
CACCACTGAACTCATCAATCAAGTGAATAATAACCAATTTACTAATACAT
TACAAGCTGAGGCTAATAGTAGCAACGTCCCCGAATTAACTAATGCACAA
GCTACATCTGTAGACTCATCAGCAGCAAGTGTGAACTATGATAGTGCATC
GAAAGCAGGTCTAAATGAAGGTGCTGTGGCCGGTATTGTTATATCCGTTC
TCTTCGTAGCTGCAGTGGTCGCTAGCTGTGCATATAGACGCTATAAAGCA
AGTAGTCTAAGCCAAGCGGGACCCAATGGTACCAAAGGTTATGTACTCAA
TGAAGATGACGAGGAGATCGCAATAGATAATCCGGTGCTTAGCTACACTA
CTACTAGTCAGGATGACGACCCACACACTCAGATTCACCACTTTCATTTA
TAAATGACTCAATTTTATCTGTTCCTGATTGTCTTGCTGGCAGTTGGTTT
TGTGTACACAACTGCCGATTCATCTCCAATCCTGTCATTTTATTCTAACA
TAACTATTTCTGGTGTAACACAAGCTGAGTTAAGTGTAGAAGGAAAGGAT
GTGGTAGCCTTAACAGCGGCTACAGTAATGAATCTACCCAGCGGCACTGT
CAGTTACATCGGAACAATTTCAAGCACCACCACCAATCGAAAGCTTAAGA
TTACCACAGAGGATGTTACTTATACTATCATTTCTAGAGTATTTACTCAG
GTTACACTTTCTCAAACAACATACACATCGGTGGATTCCCTATACACGGC
AGCCACCACTGAACTCATCAATCAAGTGAATAATAACCAATTTACTAATA
CATTACAAGCTGAGGCTAATAGTAGCAACGTCCCCGAATTAACTAATGCA
CAAGCTACATCTGTAGACTCATCAGCAGCAAGTGTGAACTATGATAGTGC
ATCGAAAGCAGGTCTAAATGAAGGTGCTGTGGCCGGTATTGTTATATCCG
TTCTCTTCGTAGCTGCAGTGGTCGCTAGCTGTGCATATAGACGCTATAAA
GCAAGTAGTCTAAGCCAAGCGGGACCCAATGGTACCAAAGGTTATGTACT
CAATGAAGATGACGAGGAGATCGCAATAGATAATCCGGTGCTTAGCTACA
CTACTACTAGTCAGGATGACGACCCACACACTCAGATTCACCACTTTCAT
TTATAA
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