mRNA_D-dudresnayi_contig9589.28375.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9589.28375.1
Unique NamemRNA_D-dudresnayi_contig9589.28375.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9589.28375.1 vs. uniprot
Match: A0A6U0JAP0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JAP0_9STRA)

HSP 1 Score: 132 bits (332), Expect = 7.810e-36
Identity = 64/129 (49.61%), Postives = 89/129 (68.99%), Query Frame = 1
Query:   82 EQQLSLTKPLSKKDRFIVNMLNSA-HRDDCWVITDPEGNDNPIVYVSPGFRTATGYSYEEMVGRNCRFLQGDGTNKEEVSKIKFATEHDTEASANITNYRRDGTPFHNEFFVTPLHTEEGAPAYFLSVQ 465
            ++Q    K LS++D  IV+MLNSA H D  + + DP+  D PIV+ S GF   TGY+  E+ GRNCRFLQG GT K +V KI+ A + + E S N+ NY++DGT F+NEFF++PL+ E+G  AY++ VQ
Sbjct:   63 QRQFVAKKELSERDATIVDMLNSAGHEDVSFCLCDPDQEDCPIVFASDGFCNFTGYAVSEIEGRNCRFLQGPGTEKADVDKIRSAIKSEKEESVNLLNYKKDGTSFNNEFFLSPLYEEDGKLAYYIGVQ 191          
BLAST of mRNA_D-dudresnayi_contig9589.28375.1 vs. uniprot
Match: A0A835ZDN1_9STRA (PAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDN1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.410e-34
Identity = 64/137 (46.72%), Postives = 85/137 (62.04%), Query Frame = 1
Query:   61 IMSMIQEEQQLSLTKPLSKKDRFIVNMLNSAHRDD-CWVITDPEGNDNPIVYVSPGFRTATGYSYEEMVGRNCRFLQGDGTNKEEVSKIKFATEHDTEASANITNYRRDGTPFHNEFFVTPLH-TEEGAPAYFLSVQ 465
            ++ ++        +K L  KD  +V+MLNS    D CWV+TDP+  DNPIV+ S GF   TGY+  E+ GRNCRFLQG  TN  +V  I+ A    T+A+  + NYR+DGT F N+FF+ PLH    GA AY+L VQ
Sbjct:   16 VLPLVTASGDFEPSKELKPKDMILVDMLNSRDEPDICWVVTDPDLEDNPIVFSSEGFSRYTGYAKSEIEGRNCRFLQGKETNPADVETIRAAIGAQTDANVCLLNYRKDGTAFLNQFFICPLHDAATGAVAYYLGVQ 152          
BLAST of mRNA_D-dudresnayi_contig9589.28375.1 vs. uniprot
Match: K0R341_THAOC (PAS domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R341_THAOC)

HSP 1 Score: 127 bits (318), Expect = 8.720e-34
Identity = 61/156 (39.10%), Postives = 99/156 (63.46%), Query Frame = 1
Query:    1 IKFHNLTGEFLFLHIFKYHKIMSMIQEEQQLSLTKPLSKKDRFIVNMLNSA-HRDDCWVITDPEGNDNPIVYVSPGFRTATGYSYEEMVGRNCRFLQGDGTNKEEVSKIKFATEHDTEASANITNYRRDGTPFHNEFFVTPLHTEEGAPAYFLSVQ 465
            I +  + G++ F   +   + +++ ++++    +K L+++D  I++MLNSA H D  + + D E  D PI++ S GF   TGY + E+ GRNCRFLQG  T KE+V +I+ A +  TEAS N+ NY++DGT F+N+FF+ PL   +   AY++ VQ
Sbjct:   31 ISYRGIRGKWHFCPSYVLQERINVPRQQRTFKASKRLAERDNTIIDMLNSAGHEDVSFCVCDHEKPDCPIIFASDGFCKLTGYGHTEIEGRNCRFLQGSETRKEDVDRIRSAIKSQTEASVNLLNYKKDGTAFNNQFFLAPLRDADERTAYYIGVQ 186          
BLAST of mRNA_D-dudresnayi_contig9589.28375.1 vs. uniprot
Match: A0A7S2U740_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U740_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.360e-33
Identity = 62/122 (50.82%), Postives = 84/122 (68.85%), Query Frame = 1
Query:  103 KPLSKKDRFIVNMLNSA-HRDDCWVITDPEGNDNPIVYVSPGFRTATGYSYEEMVGRNCRFLQGDGTNKEEVSKIKFATEHDTEASANITNYRRDGTPFHNEFFVTPLHTEEGAPAYFLSVQ 465
            K L +KD  I++ML+SA H + C+ +TDP   DNPIV+ S GF   TGY   E+ GRNCRFLQG  T   +VS+I+ A E +T+ S N+ NYR+DGTPF NEFF++PL  ++ A  Y++ VQ
Sbjct:   38 KQLCEKDCIILDMLSSAGHENVCFCVTDPSQVDNPIVFASDGFCKFTGYLPTEIEGRNCRFLQGPDTCASDVSQIRDAIEKETDTSVNLLNYRKDGTPFVNEFFLSPLRDDDHAIIYYIGVQ 159          
BLAST of mRNA_D-dudresnayi_contig9589.28375.1 vs. uniprot
Match: A0A7R9VLF4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VLF4_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.290e-33
Identity = 58/128 (45.31%), Postives = 88/128 (68.75%), Query Frame = 1
Query:   85 QQLSLTKPLSKKDRFIVNMLNS-AHRDDCWVITDPEGNDNPIVYVSPGFRTATGYSYEEMVGRNCRFLQGDGTNKEEVSKIKFATEHDTEASANITNYRRDGTPFHNEFFVTPLHTEEGAPAYFLSVQ 465
            +Q    K L ++D  I++MLNS  H   C+ + DP+  D PI++ S GF   TGYS++E+ G+NCRFLQG  T+K++V +I+ A + +TE S N+ NYR+DG+ F NEFF++PL+ ++   AYF+ VQ
Sbjct:   28 RQFDPKKKLCERDYTIIDMLNSKGHEAVCYCVCDPDLEDMPIIFSSDGFCDFTGYSHDEIEGKNCRFLQGADTSKDDVDRIRKAIKEETETSVNLLNYRKDGSTFINEFFISPLYDDKKKLAYFIGVQ 155          
BLAST of mRNA_D-dudresnayi_contig9589.28375.1 vs. uniprot
Match: A0A7S3QJQ0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJQ0_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.900e-33
Identity = 68/158 (43.04%), Postives = 95/158 (60.13%), Query Frame = 1
Query:   19 TGEFLFLHIFKYHKIMSMIQEEQQ------LSLTKPLSKKDRFIVNMLNS-AHRDDCWVITDPEGNDNPIVYVSPGFRTATGYSYEEMVGRNCRFLQGDGTNKEEVSKIKFATEHDTEASANITNYRRDGTPFHNEFFVTPLHTEEGA--PAYFLSVQ 465
             G   FLH F   K   + +EE++       S  K L +KD  +V+MLNS  H   C+ I DP+  D PI++ S GF   TGY+Y+E+ GRNCRFLQG  T+KE+V  I+ A + +TE + N+ NYR+DG  F N+FF+ PLH  +     AY++ VQ
Sbjct:    9 AGILSFLH-FLADKFQGLEEEEKKSSNVRSFSPLKSLIEKDHVLVDMLNSHGHEQVCFCICDPDVMDCPIIFASEGFCNFTGYNYDEIEGRNCRFLQGPKTSKEDVDAIRKAIKEETEVNVNLLNYRKDGATFVNQFFLAPLHYRDDPVKAAYYIGVQ 165          
BLAST of mRNA_D-dudresnayi_contig9589.28375.1 vs. uniprot
Match: A0A1E7EP39_9STRA (PAS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EP39_9STRA)

HSP 1 Score: 122 bits (305), Expect = 3.900e-32
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = 1
Query:  103 KPLSKKDRFIVNMLNSA-HRDDCWVITDPEGNDNPIVYVSPGFRTATGYSYEEMVGRNCRFLQGDGTNKEEVSKIKFATEHDTEASANITNYRRDGTPFHNEFFVTPLHTEEGAPAYFLSVQ 465
            KPLS++D  I++M+NS  H    + I DP+  D PI++ S GF   TGY  +E+ GRNCRFLQG  T KE++  I+ A + +TEAS N+ NYR+DGT F N+FF+ PL   +    YF+ VQ
Sbjct:   39 KPLSERDMTIMDMINSVGHEAVSFCICDPDQKDCPIIFASDGFCNFTGYDCQEIEGRNCRFLQGPDTKKEDIDTIRQAVKEETEASVNLLNYRKDGTSFANQFFLAPLRGSDSTLLYFIGVQ 160          
BLAST of mRNA_D-dudresnayi_contig9589.28375.1 vs. uniprot
Match: A0A7S1BVS1_9STRA (Hypothetical protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVS1_9STRA)

HSP 1 Score: 122 bits (305), Expect = 8.270e-32
Identity = 60/127 (47.24%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   88 QLSLTKPLSKKDRFIVNMLNSA-HRDDCWVITDPEGNDNPIVYVSPGFRTATGYSYEEMVGRNCRFLQGDGTNKEEVSKIKFATEHDTEASANITNYRRDGTPFHNEFFVTPLHTEEGAPAYFLSVQ 465
            Q   +K L ++D  ++ MLNS  H   C+VI+DP+  D PI +VS GF   T Y   E+ GRNCRFLQG GT K +V +I+ A + +   S N+ NYR+DG+ F NEFF++PL+ E G  AYF+ VQ
Sbjct:   32 QFEPSKLLCERDSIVIAMLNSPDHESTCYVISDPDLPDCPITFVSDGFCAFTQYPRNEIEGRNCRFLQGKGTEKADVDRIRKAIKEEKGTSVNLLNYRKDGSTFANEFFISPLYAEGGDLAYFIGVQ 158          
BLAST of mRNA_D-dudresnayi_contig9589.28375.1 vs. uniprot
Match: A0A7S2LU08_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LU08_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.980e-31
Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  103 KPLSKKDRFIVNMLNSAHRDDCWVITDPEGNDNPIVYVSPGFRTATGYSYEEMVGRNCRFLQGDGTNKEEVSKIKFATEHDTEASANITNYRRDGTPFHNEFFVTPLHTEEGAPAYFLSVQ 465
            K L ++D  I++MLNS      + ITDP   DNP++++S GF   TGY ++++VGRNCRFLQG  T+ ++V  I  A + + E S N+ NY++DGT F NEF++T L T     AYF+ +Q
Sbjct:   44 KRLCERDYIILDMLNSTPESVSFCITDPHQTDNPVIFISSGFTKLTGYQFDDIVGRNCRFLQGKETSPQDVKWISDALKSEKECSVNLLNYKKDGTQFVNEFYLTQLRTPNQELAYFIGIQ 164          
BLAST of mRNA_D-dudresnayi_contig9589.28375.1 vs. uniprot
Match: A0A126WVC6_9PHAE (Putative LOV domain-containing protein n=2 Tax=Ectocarpales TaxID=2877 RepID=A0A126WVC6_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.110e-30
Identity = 57/124 (45.97%), Postives = 80/124 (64.52%), Query Frame = 1
Query:  100 TKPLSKKDRFIVNMLNSAHRDDC--WVITDPEGNDNPIVYVSPGFRTATGYSYEEMVGRNCRFLQGDGTNKEEVSKIKFATEHDTEASANITNYRRDGTPFHNEFFVTPLHTEEGAPAYFLSVQ 465
            +K LS KD  +V+M+N         + +TDP+  DNPI++ S GF   TGY+ EE+ GRNCRFLQG  T+  +V+KI+ A     EA   + NY++DG+ FHN+FF+TP+   EG  AYFL +Q
Sbjct:   20 SKLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYAKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGTLAYFLGIQ 143          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9589.28375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U0JAP0_9STRA7.810e-3649.61Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A835ZDN1_9STRA2.410e-3446.72PAS domain-containing protein n=1 Tax=Tribonema mi... [more]
K0R341_THAOC8.720e-3439.10PAS domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S2U740_9STRA2.360e-3350.82Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7R9VLF4_9STRA3.290e-3345.31Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S3QJQ0_9STRA7.900e-3343.04Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1E7EP39_9STRA3.900e-3247.54PAS domain-containing protein n=1 Tax=Fragilariops... [more]
A0A7S1BVS1_9STRA8.270e-3247.24Hypothetical protein n=4 Tax=Corethron hystrix Tax... [more]
A0A7S2LU08_9STRA6.980e-3144.63Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A126WVC6_9PHAE1.110e-3045.97Putative LOV domain-containing protein n=2 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9589contigD-dudresnayi_contig9589:2312..2776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue8.4e-28
Seed eggNOG ortholog227086.JGI_V11_56317
EggNOG free text desc.Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
EggNOG OGs2CYKT@1,2S523@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930907.69961-CDS-D-dudresnayi_contig9589:2311..27761622930907.69961-CDS-D-dudresnayi_contig9589:2311..2776Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9589 2312..2776 -
1690557961.0487244-CDS-D-dudresnayi_contig9589:2311..27761690557961.0487244-CDS-D-dudresnayi_contig9589:2311..2776Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9589 2312..2776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9589.28375.1prot_D-dudresnayi_contig9589.28375.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9589 2312..2776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9589.28375.1

>prot_D-dudresnayi_contig9589.28375.1 ID=prot_D-dudresnayi_contig9589.28375.1|Name=mRNA_D-dudresnayi_contig9589.28375.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=155bp
IKFHNLTGEFLFLHIFKYHKIMSMIQEEQQLSLTKPLSKKDRFIVNMLNS
AHRDDCWVITDPEGNDNPIVYVSPGFRTATGYSYEEMVGRNCRFLQGDGT
NKEEVSKIKFATEHDTEASANITNYRRDGTPFHNEFFVTPLHTEEGAPAY
FLSVQ
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mRNA from alignment at D-dudresnayi_contig9589:2312..2776-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9589.28375.1 ID=mRNA_D-dudresnayi_contig9589.28375.1|Name=mRNA_D-dudresnayi_contig9589.28375.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=465bp|location=Sequence derived from alignment at D-dudresnayi_contig9589:2312..2776- (Desmarestia dudresnayi DdudBR16 monoicous)
ATTAAATTTCATAATTTAACTGGTGAATTCTTATTCTTGCATATTTTCAA ATATCATAAAATCATGTCGATGATTCAAGAAGAACAACAGCTGAGTTTGA CCAAGCCACTCTCTAAGAAGGATCGCTTCATTGTGAACATGTTGAACTCT GCTCATCGCGATGATTGTTGGGTCATCACCGATCCTGAGGGTAACGATAA TCCTATTGTTTATGTTAGTCCTGGATTTCGTACTGCAACAGGTTACTCTT ATGAGGAGATGGTAGGGAGAAATTGTCGTTTCCTGCAGGGGGATGGTACT AACAAAGAGGAAGTGTCCAAAATCAAATTCGCCACTGAACACGACACTGA GGCTTCTGCAAACATAACAAACTATCGTAGAGACGGAACTCCATTCCATA ATGAATTCTTTGTGACACCACTACATACTGAGGAAGGAGCACCTGCTTAC TTTCTGAGCGTACAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9589:2312..2776-

>mRNA_D-dudresnayi_contig9589.28375.1 ID=mRNA_D-dudresnayi_contig9589.28375.1|Name=mRNA_D-dudresnayi_contig9589.28375.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at D-dudresnayi_contig9589:2312..2776- (Desmarestia dudresnayi DdudBR16 monoicous)
ATTAAATTTCATAATTTAACTGGTGAATTCTTATTCTTGCATATTTTCAA
ATATCATAAAATCATGTCGATGATTCAAGAAGAACAACAGCTGAGTTTGA
CCAAGCCACTCTCTAAGAAGGATCGCTTCATTGTGAACATGTTGAACTCT
GCTCATCGCGATGATTGTTGGGTCATCACCGATCCTGAGGGTAACGATAA
TCCTATTGTTTATGTTAGTCCTGGATTTCGTACTGCAACAGGTTACTCTT
ATGAGGAGATGGTAGGGAGAAATTGTCGTTTCCTGCAGGGGGATGGTACT
AACAAAGAGGAAGTGTCCAAAATCAAATTCGCCACTGAACACGACACTGA
GGCTTCTGCAAACATAACAAACTATCGTAGAGACGGAACTCCATTCCATA
ATGAATTCTTTGTGACACCACTACATACTGAGGAAGGAGCACCTGCTTAC
TTTCTGAGCGTACAGATTAAATTTCATAATTTAACTGGTGAATTCTTATT
CTTGCATATTTTCAAATATCATAAAATCATGTCGATGATTCAAGAAGAAC
AACAGCTGAGTTTGACCAAGCCACTCTCTAAGAAGGATCGCTTCATTGTG
AACATGTTGAACTCTGCTCATCGCGATGATTGTTGGGTCATCACCGATCC
TGAGGGTAACGATAATCCTATTGTTTATGTTAGTCCTGGATTTCGTACTG
CAACAGGTTACTCTTATGAGGAGATGGTAGGGAGAAATTGTCGTTTCCTG
CAGGGGGATGGTACTAACAAAGAGGAAGTGTCCAAAATCAAATTCGCCAC
TGAACACGACACTGAGGCTTCTGCAAACATAACAAACTATCGTAGAGACG
GAACTCCATTCCATAATGAATTCTTTGTGACACCACTACATACTGAGGAA
GGAGCACCTGCTTACTTTCTGAGCGTACAG
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