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Homology
BLAST of mRNA_D-dudresnayi_contig9587.28373.1 vs. uniprot
Match: A0A6H5JK75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK75_9PHAE) HSP 1 Score: 159 bits (403), Expect = 7.290e-44 Identity = 104/187 (55.61%), Postives = 124/187 (66.31%), Query Frame = 1
Query: 217 MEGFVEGTGNGDDLSP----------------RMTTRAGSGPSA-LAGLVSTGSFGDADVTSPVHDSYGMVEMIDEVDDLLSNHLDFMHSRSGSKTSSGSSR---VGSKSSLRRA--SSQMMDELV-EVPIAFVAIVTFDLKQGPCLVCVDPPIQDVKGQPLHPLLAADIHTLRSEMPFKALPENGL 708
MEGFVEG GD P R+TTRAG+G +A LAG+V+ S G AD SPVH +YG+ + +EV+DLLS+H+ FM RS SGSS+ +G S RA SS+ MD E+PIA VAIVTFDL+QGPCLVCVDPPI+D +GQP PL AADIH LRS+MPFKALPENGL
Sbjct: 1 MEGFVEGDDPGDAPPPPAVTPSTAAAPGSNSKRLTTRAGTGTAASLAGMVAARSSGAADGISPVHGAYGLA-IEEEVEDLLSSHMKFMQGRSSPSNGSGSSQRSGLGGISVSYRAGSSSKPMDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDDQGQPTLPLTAADIHVLRSDMPFKALPENGL 186
BLAST of mRNA_D-dudresnayi_contig9587.28373.1 vs. uniprot
Match: D7FT00_ECTSI (Avl9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT00_ECTSI) HSP 1 Score: 155 bits (391), Expect = 1.530e-39 Identity = 95/157 (60.51%), Postives = 115/157 (73.25%), Query Frame = 1
Query: 259 SPRMTTRAGSGPSA-LAGLVSTGSFGDADVTSPVHDSYGMVEMIDEVDDLLSNHLDFMHSRSGSKTSSGSSR---VGSKSSLRR--ASSQMMDELV-EVPIAFVAIVTFDLKQGPCLVCVDPPIQDVKGQPLHPLLAADIHTLRSEMPFKALPENGL 708
S R+TTRAG+G +A LAG+V+ S G AD SPVH +YG+ + +EV+DLLS+H+ FM RS SGSS+ +G KS R ASS+ MD E+PIA VAIVTFDL+QGPCLVCVDPPI+D +GQP PL ADIH LRS+MPFKALPENGL
Sbjct: 15 SRRVTTRAGTGTAASLAGMVAARSSGAADGISPVHGAYGLA-IEEEVEDLLSSHMKFMQGRSSPSNGSGSSQRSGLGGKSVSYRGGASSKPMDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDEQGQPTLPLSTADIHVLRSDMPFKALPENGL 170
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 156.0 |
Seed ortholog evalue | 2.2e-35 |
Seed eggNOG ortholog | 2880.D7FT00 |
KEGG ko | ko:K03283 |
KEGG TC | 1.A.33.1 |
KEGG Pathway | ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169 |
KEGG Module | M00353,M00355 |
EggNOG free text desc. | Translation initiation factor IF-2, N-terminal region |
EggNOG OGs | COG4642@1,COG5253@1,KOG0229@2759,KOG0231@2759 |
Ec32 ortholog description | AVL9/DENND6 domain |
Ec32 ortholog | Ec-24_004260.1 |
COG Functional cat. | T |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516 |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 711 |
Cds size | 708 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig9587.28373.1 >prot_D-dudresnayi_contig9587.28373.1 ID=prot_D-dudresnayi_contig9587.28373.1|Name=mRNA_D-dudresnayi_contig9587.28373.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=236bp
AQCFPCPSELRTISVNWAYTEAGGRRCVAWLHGLRKEEKRGDHCQKNSSL TWGKNAVSTSCAERLTKSKVSVMEGFVEGTGNGDDLSPRMTTRAGSGPSA LAGLVSTGSFGDADVTSPVHDSYGMVEMIDEVDDLLSNHLDFMHSRSGSK TSSGSSRVGSKSSLRRASSQMMDELVEVPIAFVAIVTFDLKQGPCLVCVD PPIQDVKGQPLHPLLAADIHTLRSEMPFKALPENGL back to topmRNA from alignment at D-dudresnayi_contig9587:4835..10099+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig9587.28373.1 ID=mRNA_D-dudresnayi_contig9587.28373.1|Name=mRNA_D-dudresnayi_contig9587.28373.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=5265bp|location=Sequence derived from alignment at D-dudresnayi_contig9587:4835..10099+ (Desmarestia dudresnayi DdudBR16 monoicous) GCTCAGTGCTTCCCCTGTCCCTCCGAGCTCAGAACTATCTCGGTTAACTG
GGCATATACAGAAGCCGGGGGTAGAAGGTGCGTTGCGTGGTTGCATGGTC
TCAGGAAGGAGGAGAAACGCGGAGATCACTGCCAAAAAAACTCCTCGCTT
ACTTGGGGAAAAAACGCAGTTTCGACCAGCTGTGCGGAGCGTCTTACCAA
GTCAAAGGTATGAACCGTAATGCTCGCAGAGAGAGCGTCGATGGGAGTGG
TAATAGAGTATAGAGCGCAGCACTGCTCGAAGGTACATATAGAAATATAT
CTGGAGCTGAGTCCTCACACCGACGCGCGTGACGGACGCCGCACGGTGGT
GGACAGATGCTGCAACTTTTTAGTATGTTATGGCTCTCTTCTTGGAACGT
TCCGCCGCTCGCCTTCGATTCGCTTGATCGGCCATAGTGTCACACAAAAG
CCGTGTTGTGCTCGTGGTCCCACACGTTGGAGGCGAAGTCTACGCGCACG
TCCAGCAATAAAAAACGAGCCCCTCGCTCAAAGATACTCTTTCTCCGTCC
GCACACACGGGTTATTGCATTGAAATATATCCCTCTGAAGCTGCCTCTGT
CTTCTGTTAGTTGTAGTACGTAGTAGAGCTACTCGTGTCACAGTCGTCAA
CAGGAACGCTTCATTCGTCCTGCTATGTACTCCTGCACGGCACGAACACT
GCACTACCGTAACACGTCGTCAACAGGAACGCTTCATTCGTCCTGCTATG
TACTCCTGCACGGCACGAACACTGCACTACCGTAACACCTGAGCGAACTC
GTAGTCGGCACCAAATGTTTGTCGAGCTCCCTCTCTCTCTTTCTCTCGCT
CTCTCCATGTATTCGGCATTCTACAACTACCATGCGCAATGTCTCTGTCT
ATCTTATCCCACTGTCTTTCTTCACAGCGGATTACACTAGAAACTCGAAG
CTCCTCCCTCCTTCCGCGTTGCACAGACAGTTACTACAGTAAAATATCCA
CAAGTCCATATAGATTCGTAGAGATATGATAAGAGCAAGGCGACTTCCAC
TTGTTCGTACGACGTATGGCCTCGTGTTCACTGATTGTTGATATTAAGAT
TACGCATATCTATATTTAGCGTCGTGATGCTTTTAGCCTGGCCACGTGTG
TAGAGCTCTCCGCCGCGGTGTTTACTCAAAACCCAAACTACGACCGGCGG
TAACAGAATGGTCACCACAAGGACCGTCGAAACGCTACATATTATGTCAT
TCGTCGTGCGGAATCTAATACAGCCTATCGCGAGGCATCCCAATGTTTTC
AATGCCGAGGTTTCAGTGATGCCAAGGTCGCCCAGACGTTCTTGGACAGC
ACCCGGGCGCTGACCCTTCTCAAGGCCGCTTCTGCTGCCCCCTGGCCCTG
TGGCCAATCACCGCTATGCTGTATCCATGCTGATCCCAGGGGGTAACCCT
ACGTAGGCCAGGGGAGGGGGGGACAGCAGTAGTCATGGTGTTTATGCCGA
CACCACCCTGCTATCGTATGATAGTTGAAGTGGTGAGGCCGCCAAAGTCC
CCTTTGTCGAAAGTGTGGTGGTTGAAACCCCGTAAAAACAAAAATATATA
TTTTCGTTTTGGTTGCGTCCTTCCGTCATGGAGAGAGCGTGAGCAGGAGA
AATATCCGTGAAAGGTGACGAGCTGCGAGGATGCTTAAACCCAATGCGCG
ATACCCGTACGGAGGCATGCACCGGGGGGCGCGCGGGGCGGGGGGGGGGT
GATGAACCCTTGAGACCATGAGCCGCCGAGCAAGCGGGGTAGGGGGTTAC
ATGCGGGACGATTAATAATACATACGCCGGAAACTTGCAGAACAGAACCT
GTATCGCGTCATACCTGGTACGGTATTGTCGCGCGACGAAGCCCGAGGTT
GATTTCAAGCTGGCCTCTTTCTTCACACACCAAGTATACTCCTGTAATAC
GGCCACCTCTAACCCTGACATAAACACGCGAGTGCCGACACGGAACCGCC
TCTTTCCACGCCACTGACAAACCATGTTAGATACCTCGACCCGGATCCAA
CCATGCAACATGAAACGCTTGTGCAAGGAGGCCTGCTTATTCCTGGGGGT
AGATGTGGCTGCAAGCGGATCCATTTCCCCGATGCTACTACTGTCATACA
GTACTGTAGGCCAGACCATGTGGTCCTTGCACTGTTGTACCGCTGTTTAC
TCTCCACAAGGCTAAGGCTAAAGGCGTACTTTCATACTCGGATGATTACC
TCCTGTCAAATTCCCAGTAGGTTTTACAGTTGCTTAGGCAGGATCGTTTA
GAGAGGTTTTATGTTTTTACTACTCCCCATTATTGTGGTAGTTTCTCCAT
ATTATTATGGTGTGGTCGTTAGGGTTAGGGTTTTACGCTAGTTCCAAGAA
ATTTACGAACATGCTCAACATCCCACGTTGGTACTATTATATTCACATAA
TACAACGAACATCCTGAAAGATTCTGCCTATTTTTTTTGTTTTGTTTGTA
AGACGATGACCTCCAAATGCCGCACGCACCCTCTGCAGCTTTCGTTAGGG
TTAGGTTTATAGCGCTTCTTCTAAAGGAAATTTCCCAACTGCTCAAACAT
CCCAATATGGTACTATTCATACAACAAAAACGAACATCCTAAAAGATGCT
TCGTTTTTTGTAAGACGACGACATCCAAATGCCGCCGCACGCACCCTGCT
GTGCAGGTTTCCGTGATGGAAGGCTTCGTGGAAGGAACGGGAAACGGGGA
TGACCTTTCCCCGAGGATGACGACGAGGGCGGGGTCTGGCCCGTCGGCGC
TGGCCGGCCTCGTCAGCACCGGCTCTTTCGGCGACGCGGACGTTACTAGC
CCCGTGCACGACTCGTACGGCATGGTTGAGATGATCGACGAGGTGGACGA
CCTTCTCTCCAACCATCTGGATTTCATGCACAGGTGAATAATCTATAGTA
TGAATGATTGTACTTACAAAAACATCAGCCGTGGTTGTGTACTATTCGAA
CTGTTGTATATTATACTCCACAGTTTACTCGTGTACCGTATCGGCCCTTT
CCGCTTTCGTTTTGCACCGTAGTGCACTACCGTTGCGGGTTCGGGGGCCA
GGGGATAATCGGAGCCGCCTTAACAACGTTGTAGGACGGAACTTTCTTTT
TTCGTTTTATTATATGATTAGTACCAAAGTGGGCTGCTCAGCAGTTTCGG
AAAATTCTACCCCTAACCCTAATCCTTACCCTAACGAACACACCTATACT
AATAGCAAGTCAAAAACTCTGTAAAGTTCCTGTAAAGTTCCGTCCTACAA
CATCAACCATTGTTGTTGCTAAGCCTACTGGATACTCGTCAACCTCACTT
TCGTGTGATACATCGATCTATGCAATACGGAGATAATGTGAAGCCTTATA
CTTTTAAAGCCAAGACGAATGTGGTCCGATTTTTTCCCATATGCCAATCC
CATACAAAAACATGACGCTCCGCCAGACTACTACTTGCTATCGTCTCCTT
TGGAAGTGAAAATGTTAGTTAATTCTTCTTCGAAGTACATTATTATAGTG
AAAATGAGTTAATTGTTATTACATTATTATTGAAAAGAGTTTTTTGTTTT
TAATTTAGGCTTGTATAACATTCATTAACTAATTGTTGTATTATACGCCG
TACCAGGTATTCTTGTTAACTGTATGGCAAAAGTACTTTCAAACTTGTAC
AACAGTAGTTAGTATAATAGTAGTCTAGAGTTGAAAAGAAAAAAGTCAAA
ACTAGTGGTTCGCGTTTCGGGTGTTGCACGCACAAAAAAGAGGTTTCGGA
AAAAAAATCAGCCCAGGGTGCCACTATTTAATTAATTTTCGTACCCTTTC
CTCAGTCTGGATGTTATATTATTATTGTCAAAGCGCTGTGTCCTAGAGCT
TTGCATGGCGTTCGTTGGAGCACATTTTGACAACTTGGTTACGTAGGGAG
CGAGGGGGGGGGGGGTCATAAACATGCGAGTTGGATTCCCTCAGAATGAT
GTTTTATTTCTTTTATGGGACCGAAAATGTTTCGGAAATTCTCACGCGCG
TCTGTTTATGTCGCTCTCTCTGCACCAGAGGTCGTTTCTTTCTCGCTTCT
GGTCGTTAGCCCGACACTCACTGGCAGCGTGCATGGGTATGGTTGTGATT
GTGGTTGTTGTTGTCGTTGTTGTTGTTGTCTTCACACATTAAAAATCGTC
CTTCTTACCCTACGACAGACATCCAGCAGCGTACTCAGAGTCTGCACTGA
TTCTTCCGCCCTAGAGAGATACGAAATTCCGTGGCCACAAACTACATAAT
AGCAATAAATCGCAAATTGAACAAAAAACAACGGAAAAAAAAAAGAAATA
GAATACTACGAGAAAAAAAAATGGTGGGTGCATGAAATCCCCCCGCCGGA
CCATATACGCATCGTGTGTGCCACCAATCAATCGACGCATGTTATGAAAA
GCAGTTCGTGGGGTTATATTGCGTAGCTGACGGGTAAGGCCATAATATCT
TCCTTGGCAACGGTAAAAAATGCATCATGCAAAGAAGGCAGGGTGTTTAA
GTTGCGTTTTGACGTCGCCATGGTAGTAGACGGGGCGGCCTTGTTGGGGG
TATACGTCGTATAGGCATAGACAGTCTATACCCTTGGGTGGCTGTTGTTG
TTGTTGTTGTCTTCAAATTTAAAAATCGTCCTTGCTTCCCTACGACATCC
ATTTCTACCTAACGTGTCTTTTGTCATCCCCTCTTTCTTATTTTGACGTG
TGCAAGTCGATCGGGATCGAAGACGAGCTCTGGGTCGTCGAGGGTGGGGA
GCAAGTCCTCTCTGCGTCGTGCCTCGTCTCAGATGATGGACGAGCTAGTG
GAGGTTCCCATTGCTTTCGTCGCCATCGTCACGTTCGACCTCAAGTGAGT
CGACTCTGTATCTCTCTCTCTGCTGTTCTGATAGGCGGCACTGGTGGATG
GATTGGGCTGGTTGGTTGATTTGGTGCGTTGGGTCGTTGGTCCGTTGGTT
TTTTGGACGTCTGGTCAATGATGTCACCGCGCTTTTGGAAGACGTGAATA
GCGTTATCAACTTCCCTGCGTGCGGGCTCCCCTTCGTTTTTTTCGTGGTC
GTTCTCGGTCGTGGTCGGTTGTATACAGGCAGGGGCCGTGCTTGGTGTGC
GTGGATCCCCCGATACAGGACGTCAAAGGACAGCCGCTGCATCCCCTGTT
GGCGGCGGATATCCACACTCTGCGATCCGAGATGCCGTTCAAGGCTCTGC
CGGAGAACGGCCTGG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig9587:4835..10099+ >mRNA_D-dudresnayi_contig9587.28373.1 ID=mRNA_D-dudresnayi_contig9587.28373.1|Name=mRNA_D-dudresnayi_contig9587.28373.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at D-dudresnayi_contig9587:4835..10099+ (Desmarestia dudresnayi DdudBR16 monoicous) GCTCAGTGCTTCCCCTGTCCCTCCGAGCTCAGAACTATCTCGGTTAACTG GGCATATACAGAAGCCGGGGGTAGAAGGTGCGTTGCGTGGTTGCATGGTC TCAGGAAGGAGGAGAAACGCGGAGATCACTGCCAAAAAAACTCCTCGCTT ACTTGGGGAAAAAACGCAGTTTCGACCAGCTGTGCGGAGCGTCTTACCAA GTCAAAGGCTCAGTGCTTCCCCTGTCCCTCCGAGCTCAGAACTATCTCGG TTAACTGGGCATATACAGAAGCCGGGGGTAGAAGGTGCGTTGCGTGGTTG CATGGTCTCAGGAAGGAGGAGAAACGCGGAGATCACTGCCAAAAAAACTC CTCGCTTACTTGGGGAAAAAACGCAGTTTCGACCAGCTGTGCGGAGCGTC TTACCAAGTCAAAGGTTTCCGTGATGGAAGGCTTCGTGGAAGGAACGGGA AACGGGGATGACCTTTCCCCGAGGATGACGACGAGGGCGGGGTCTGGCCC GTCGGCGCTGGCCGGCCTCGTCAGCACCGGCTCTTTCGGCGACGCGGACG TTACTAGCCCCGTGCACGACTCGTACGGCATGGTTGAGATGATCGACGAG GTGGACGACCTTCTCTCCAACCATCTGGATTTCATGCACAGGTTTCCGTG ATGGAAGGCTTCGTGGAAGGAACGGGAAACGGGGATGACCTTTCCCCGAG GATGACGACGAGGGCGGGGTCTGGCCCGTCGGCGCTGGCCGGCCTCGTCA GCACCGGCTCTTTCGGCGACGCGGACGTTACTAGCCCCGTGCACGACTCG TACGGCATGGTTGAGATGATCGACGAGGTGGACGACCTTCTCTCCAACCA TCTGGATTTCATGCACAGTCGATCGGGATCGAAGACGAGCTCTGGGTCGT CGAGGGTGGGGAGCAAGTCCTCTCTGCGTCGTGCCTCGTCTCAGATGATG GACGAGCTAGTGGAGGTTCCCATTGCTTTCGTCGCCATCGTCACGTTCGA CCTCAATCGATCGGGATCGAAGACGAGCTCTGGGTCGTCGAGGGTGGGGA GCAAGTCCTCTCTGCGTCGTGCCTCGTCTCAGATGATGGACGAGCTAGTG GAGGTTCCCATTGCTTTCGTCGCCATCGTCACGTTCGACCTCAAGCAGGG GCCGTGCTTGGTGTGCGTGGATCCCCCGATACAGGACGTCAAAGGACAGC CGCTGCATCCCCTGTTGGCGGCGGATATCCACACTCTGCGATCCGAGATG CCGTTCAAGGCTCTGCCGGAGAACGGCCTGGCAGGGGCCGTGCTTGGTGT GCGTGGATCCCCCGATACAGGACGTCAAAGGACAGCCGCTGCATCCCCTG TTGGCGGCGGATATCCACACTCTGCGATCCGAGATGCCGTTCAAGGCTCT GCCGGAGAACGGCCTG back to top
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