mRNA_D-dudresnayi_contig9566.28356.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9566.28356.1
Unique NamemRNA_D-dudresnayi_contig9566.28356.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9566.28356.1 vs. uniprot
Match: D7G928_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G928_ECTSI)

HSP 1 Score: 354 bits (909), Expect = 2.950e-116
Identity = 232/434 (53.46%), Postives = 273/434 (62.90%), Query Frame = 1 
Query:    1 FEKGLSTTRFHKGFQRRMQSHIKQDAVRLEREAFKQHLSLLHLDRRRQRLGSLDKRNGFNLITGEFDAANRRCTTPFHIKPITRDNGSLSEVAERAEYLLLRDSKYKFHAPAWSGKNHDERQDLLQREGLKKAKKSTLLGIGSADLASAGTEDMFSKAIYDPAKACAVEGLVEMSIPGRYTPRKLAAARAAPAPQPSD--------HSSGEGHAASTPASGTTFRVVPNDLGKFCTRRRNGGSVAPGIAPPKRFCASQSAPALKRNPHGSRQSGTSSPGLAAS---APVIGGDG----GIATAGSEGSWEVTARSMLSDKSQTCGATTVGDGRSADGSLSTWGGRRRGHGLSRCGSDFSRQSTAGGHGATERSGDATAGFVQKSASVGRLA--STGTCGVSARSGSSCWSRAVSSSQRRVANQVALDVAAVRSL 1251
            F KGLSTTRFH+GFQRR QS+I+QD  RL+REA KQH+S+LHL+RRRQRLGSLDKRNGFNLITG+FDA NRRCTTPFH++P TR+ GSLSEVAERAEYLLLRDS+YKFHAPAWSGKNHDERQDLLQREGL K KKSTLLG+G+ADLASAG  DMFSK+IYDPAK CAVEGLVE   PGRYTPRK+ +AR A A    D          SG+   +S  A  T FRVVPN LG   T    GG+   GIAP KR C S+S P + R+P    + GT +P   +S   +P  GG      G    G  G+  V A  +LS         T G  R     L+                  +R +TAG           T GFV+K+AS       S G  G     GS+  SR  S ++RR  +Q+ LD+A +RSL
Sbjct:    2 FLKGLSTTRFHQGFQRRKQSNIRQDESRLQREALKQHMSVLHLERRRQRLGSLDKRNGFNLITGQFDA-NRRCTTPFHVQPRTRETGSLSEVAERAEYLLLRDSEYKFHAPAWSGKNHDERQDLLQREGLNKPKKSTLLGVGTADLASAGANDMFSKSIYDPAKTCAVEGLVETCFPGRYTPRKVTSARRAAAASRDDTPPLRQGQEKSGQRSCSSPGALDTVFRVVPNGLGNHSTVGGRGGATVAGIAPCKRLCGSRSTPTI-RSPENKAEVGTGTPLRKSSPMRSPSPGGGSRRHTGSGGEGGRGAGSVFAERLLS--------ATSGSARRGSRGLTRXXXXXXXXXXXXXTQGVARATTAG-----------TEGFVKKTASPEDCTRRSPGEGGP----GSARLSRGQSPAERRSNDQLTLDLATIRSL 410
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9566.28356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G928_ECTSI2.950e-11653.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9566contigD-dudresnayi_contig9566:6843..9245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.4
Seed ortholog evalue2.3e-96
Seed eggNOG ortholog2880.D7G928
EggNOG OGs2EXPF@1,2SZAY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002120.1
Exons3
Model size1260
Cds size1260
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9566.28356.1prot_D-dudresnayi_contig9566.28356.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9566 6843..9245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930904.8541083-CDS-D-dudresnayi_contig9566:6842..77611622930904.8541083-CDS-D-dudresnayi_contig9566:6842..7761Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9566 6843..7761 -
1690557959.92779-CDS-D-dudresnayi_contig9566:6842..77611690557959.92779-CDS-D-dudresnayi_contig9566:6842..7761Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9566 6843..7761 -
1622930904.8739924-CDS-D-dudresnayi_contig9566:8414..85061622930904.8739924-CDS-D-dudresnayi_contig9566:8414..8506Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9566 8415..8506 -
1690557959.9424005-CDS-D-dudresnayi_contig9566:8414..85061690557959.9424005-CDS-D-dudresnayi_contig9566:8414..8506Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9566 8415..8506 -
1622930904.8956273-CDS-D-dudresnayi_contig9566:8996..92451622930904.8956273-CDS-D-dudresnayi_contig9566:8996..9245Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9566 8997..9245 -
1690557959.9560177-CDS-D-dudresnayi_contig9566:8996..92451690557959.9560177-CDS-D-dudresnayi_contig9566:8996..9245Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9566 8997..9245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9566.28356.1

>prot_D-dudresnayi_contig9566.28356.1 ID=prot_D-dudresnayi_contig9566.28356.1|Name=mRNA_D-dudresnayi_contig9566.28356.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=420bp
FEKGLSTTRFHKGFQRRMQSHIKQDAVRLEREAFKQHLSLLHLDRRRQRL
GSLDKRNGFNLITGEFDAANRRCTTPFHIKPITRDNGSLSEVAERAEYLL
LRDSKYKFHAPAWSGKNHDERQDLLQREGLKKAKKSTLLGIGSADLASAG
TEDMFSKAIYDPAKACAVEGLVEMSIPGRYTPRKLAAARAAPAPQPSDHS
SGEGHAASTPASGTTFRVVPNDLGKFCTRRRNGGSVAPGIAPPKRFCASQ
SAPALKRNPHGSRQSGTSSPGLAASAPVIGGDGGIATAGSEGSWEVTARS
MLSDKSQTCGATTVGDGRSADGSLSTWGGRRRGHGLSRCGSDFSRQSTAG
GHGATERSGDATAGFVQKSASVGRLASTGTCGVSARSGSSCWSRAVSSSQ
RRVANQVALDVAAVRSLAA*
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mRNA from alignment at D-dudresnayi_contig9566:6843..9245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9566.28356.1 ID=mRNA_D-dudresnayi_contig9566.28356.1|Name=mRNA_D-dudresnayi_contig9566.28356.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2403bp|location=Sequence derived from alignment at D-dudresnayi_contig9566:6843..9245- (Desmarestia dudresnayi DdudBR16 monoicous)
TTCGAAAAGGGTCTGTCTACGACCCGATTTCACAAGGGTTTCCAGCGTCG
TATGCAGTCGCATATCAAGCAAGACGCGGTGAGGCTCGAGAGGGAGGCGT
TCAAGCAACACTTGAGCTTGCTCCACCTCGACAGGCGGCGGCAACGTCTC
GGAAGCCTGGACAAGCGTAACGGGTTCAACCTCATTACCGGAGAATTCGA
CGCCGCTAACCGTAGGTGTACGACACCATTTCACATCAAGCCAATAACGG
TAGGTTATTACCCTACTACCAGTATGCGAGTATTTACTCTACTCTCCCCT
TCGGCTTCCAATTCGTTTGCTGGACCACAATGCGATGTTGGCTCAGAAGC
AGACGTTGTTATCAATACAGTATTTGTATCTACTCGAACGATATCAGCAT
TGGTCTAATCCGCTTGAGCCACGAACGTGCAATTCCAGGGAAAGATACTG
ATTTTTGGGAGTGAAGATCTGCTTGCTGGCCAATCATGTGCCCACTTGTG
CTATCCCTTGCGCCACACCACGATGTCACTTCATGTGTGAGGTCGTGAAT
CCAACAGTTGTTTGAAATTCAAATCGGGGTTATTATTGGTCCAAACATGA
AAGCCTGCTTCCTCCTTGAAACTCGCCCTTCTTGCCGTACCCTATGATGT
CACTTTTGCCCCTGCTTCTCTTTTCCGGTTATCCTTATCCCCGTCCGTAA
TCATGGCAAATCTTGCAACCTCTTATTACTCTTGATCAGAGGGACAACGG
ATCACTCTCGGAAGTTGCCGAACGTGCTGAGTACCTGCTTTTGCGCGACT
CCAAGTACAAGTTCCACGCTCCCGCTTGGAGGTGAGACACTCCGCTATCA
TATATGAGCGAAGGTGCCCCTGCTTCCCTCGCCTAGCGGTGTAGCCGGAG
CGCCATTATTGGGCTATGGTGGGCAGGGACAGAGCAAAATCCCCGTGAAC
TAAAACTTGACAACGAGCAGCCGAGACCGTTGAGGTCCTGGGACCAATAG
TGTTCGGGCTCCACCATTGCTTCGTATACCTCGAAGGTAAAGCTATCATA
ATAGCTTACGGATCACAATACGATGGCGCCCCCGTAAGATCTCGCATCGT
CTACTGCACAGACGTCAGTGTTGCATTGTTCGTAGTTTATATCTGTCATT
TCCGCAGTTGCGGGAGGAGTGATATACTCTGTCCGTATCTTTCGGGAATG
GAGGGAATACAAAACCCGTTGAATAGTGATTTATTCGTGCTTTGCCTCGG
CGCGAAATTCGCTTCGGCCGCCGTCGTCAGGCGGGTCCCCGTTGTCTCCC
ATACACACTTAAACAAGCACCAACGATCGTTGCGTGTTACAAAAAAAAAG
TAGTTCGAGGGCCATCACATGCCAAACCCGCCCACTTACGTATGCAGAGT
GTCTCCCGAACGCTACTCGCGGATAGCACGCCGTCAGCCCATCCTAAATC
GTCTCAAAACGCCCGGTGTATCATACGTCTACAGCGGAAAGAATCACGAC
GAACGGCAGGATCTACTCCAGCGCGAGGGCCTCAAAAAGGCAAAAAAATC
CACCCTGTTGGGCATTGGAAGCGCCGACCTCGCGTCCGCTGGCACGGAGG
ATATGTTTTCCAAGGCCATATACGACCCGGCAAAGGCTTGTGCCGTCGAA
GGTCTCGTAGAAATGTCAATCCCTGGTCGCTACACTCCGCGCAAGCTGGC
GGCAGCTCGAGCGGCCCCTGCCCCCCAACCGAGTGACCACAGCAGTGGCG
AGGGACATGCCGCATCGACACCGGCCTCGGGCACAACTTTCCGGGTCGTG
CCTAACGACTTGGGCAAATTTTGCACCCGCCGCAGGAATGGCGGGTCCGT
CGCACCTGGCATCGCGCCCCCAAAGCGATTTTGCGCGTCCCAGAGTGCCC
CGGCCCTGAAGCGGAATCCGCATGGGTCAAGGCAATCCGGAACATCATCG
CCAGGATTGGCTGCGTCAGCCCCAGTAATCGGTGGCGACGGGGGCATCGC
TACTGCCGGAAGTGAGGGGAGCTGGGAGGTTACTGCGAGATCGATGCTAT
CCGATAAATCGCAAACATGCGGAGCGACAACTGTCGGCGACGGCAGAAGT
GCCGATGGGTCACTTTCAACATGGGGGGGAAGGAGGAGAGGCCATGGATT
GAGTCGGTGCGGATCGGACTTTTCAAGGCAAAGTACTGCGGGTGGTCATG
GAGCCACAGAGCGGAGTGGCGATGCGACTGCGGGTTTCGTGCAAAAGTCG
GCATCGGTTGGTCGCTTAGCATCCACCGGAACGTGTGGGGTGTCGGCGAG
ATCAGGGTCGTCCTGCTGGTCAAGGGCAGTAAGTTCTTCCCAACGGAGGG
TTGCGAATCAAGTCGCATTAGACGTTGCCGCCGTTCGCTCACTGGCCGCT
TAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9566:6843..9245-

>mRNA_D-dudresnayi_contig9566.28356.1 ID=mRNA_D-dudresnayi_contig9566.28356.1|Name=mRNA_D-dudresnayi_contig9566.28356.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2520bp|location=Sequence derived from alignment at D-dudresnayi_contig9566:6843..9245- (Desmarestia dudresnayi DdudBR16 monoicous)
TTCGAAAAGGGTCTGTCTACGACCCGATTTCACAAGGGTTTCCAGCGTCG
TATGCAGTCGCATATCAAGCAAGACGCGGTGAGGCTCGAGAGGGAGGCGT
TCAAGCAACACTTGAGCTTGCTCCACCTCGACAGGCGGCGGCAACGTCTC
GGAAGCCTGGACAAGCGTAACGGGTTCAACCTCATTACCGGAGAATTCGA
CGCCGCTAACCGTAGGTGTACGACACCATTTCACATCAAGCCAATAACGT
TCGAAAAGGGTCTGTCTACGACCCGATTTCACAAGGGTTTCCAGCGTCGT
ATGCAGTCGCATATCAAGCAAGACGCGGTGAGGCTCGAGAGGGAGGCGTT
CAAGCAACACTTGAGCTTGCTCCACCTCGACAGGCGGCGGCAACGTCTCG
GAAGCCTGGACAAGCGTAACGGGTTCAACCTCATTACCGGAGAATTCGAC
GCCGCTAACCGTAGGTGTACGACACCATTTCACATCAAGCCAATAACGAG
GGACAACGGATCACTCTCGGAAGTTGCCGAACGTGCTGAGTACCTGCTTT
TGCGCGACTCCAAGTACAAGTTCCACGCTCCCGCTTGGAGAGGGACAACG
GATCACTCTCGGAAGTTGCCGAACGTGCTGAGTACCTGCTTTTGCGCGAC
TCCAAGTACAAGTTCCACGCTCCCGCTTGGAGCGGAAAGAATCACGACGA
ACGGCAGGATCTACTCCAGCGCGAGGGCCTCAAAAAGGCAAAAAAATCCA
CCCTGTTGGGCATTGGAAGCGCCGACCTCGCGTCCGCTGGCACGGAGGAT
ATGTTTTCCAAGGCCATATACGACCCGGCAAAGGCTTGTGCCGTCGAAGG
TCTCGTAGAAATGTCAATCCCTGGTCGCTACACTCCGCGCAAGCTGGCGG
CAGCTCGAGCGGCCCCTGCCCCCCAACCGAGTGACCACAGCAGTGGCGAG
GGACATGCCGCATCGACACCGGCCTCGGGCACAACTTTCCGGGTCGTGCC
TAACGACTTGGGCAAATTTTGCACCCGCCGCAGGAATGGCGGGTCCGTCG
CACCTGGCATCGCGCCCCCAAAGCGATTTTGCGCGTCCCAGAGTGCCCCG
GCCCTGAAGCGGAATCCGCATGGGTCAAGGCAATCCGGAACATCATCGCC
AGGATTGGCTGCGTCAGCCCCAGTAATCGGTGGCGACGGGGGCATCGCTA
CTGCCGGAAGTGAGGGGAGCTGGGAGGTTACTGCGAGATCGATGCTATCC
GATAAATCGCAAACATGCGGAGCGACAACTGTCGGCGACGGCAGAAGTGC
CGATGGGTCACTTTCAACATGGGGGGGAAGGAGGAGAGGCCATGGATTGA
GTCGGTGCGGATCGGACTTTTCAAGGCAAAGTACTGCGGGTGGTCATGGA
GCCACAGAGCGGAGTGGCGATGCGACTGCGGGTTTCGTGCAAAAGTCGGC
ATCGGTTGGTCGCTTAGCATCCACCGGAACGTGTGGGGTGTCGGCGAGAT
CAGGGTCGTCCTGCTGGTCAAGGGCAGTAAGTTCTTCCCAACGGAGGGTT
GCGAATCAAGTCGCATTAGACGTTGCCGCCGTTCGCTCACTGGCCGCTTA
ACGGAAAGAATCACGACGAACGGCAGGATCTACTCCAGCGCGAGGGCCTC
AAAAAGGCAAAAAAATCCACCCTGTTGGGCATTGGAAGCGCCGACCTCGC
GTCCGCTGGCACGGAGGATATGTTTTCCAAGGCCATATACGACCCGGCAA
AGGCTTGTGCCGTCGAAGGTCTCGTAGAAATGTCAATCCCTGGTCGCTAC
ACTCCGCGCAAGCTGGCGGCAGCTCGAGCGGCCCCTGCCCCCCAACCGAG
TGACCACAGCAGTGGCGAGGGACATGCCGCATCGACACCGGCCTCGGGCA
CAACTTTCCGGGTCGTGCCTAACGACTTGGGCAAATTTTGCACCCGCCGC
AGGAATGGCGGGTCCGTCGCACCTGGCATCGCGCCCCCAAAGCGATTTTG
CGCGTCCCAGAGTGCCCCGGCCCTGAAGCGGAATCCGCATGGGTCAAGGC
AATCCGGAACATCATCGCCAGGATTGGCTGCGTCAGCCCCAGTAATCGGT
GGCGACGGGGGCATCGCTACTGCCGGAAGTGAGGGGAGCTGGGAGGTTAC
TGCGAGATCGATGCTATCCGATAAATCGCAAACATGCGGAGCGACAACTG
TCGGCGACGGCAGAAGTGCCGATGGGTCACTTTCAACATGGGGGGGAAGG
AGGAGAGGCCATGGATTGAGTCGGTGCGGATCGGACTTTTCAAGGCAAAG
TACTGCGGGTGGTCATGGAGCCACAGAGCGGAGTGGCGATGCGACTGCGG
GTTTCGTGCAAAAGTCGGCATCGGTTGGTCGCTTAGCATCCACCGGAACG
TGTGGGGTGTCGGCGAGATCAGGGTCGTCCTGCTGGTCAAGGGCAGTAAG
TTCTTCCCAACGGAGGGTTGCGAATCAAGTCGCATTAGACGTTGCCGCCG
TTCGCTCACTGGCCGCTTAA
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