mRNA_D-dudresnayi_contig9562.28350.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9562.28350.1
Unique NamemRNA_D-dudresnayi_contig9562.28350.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9562.28350.1 vs. uniprot
Match: A0A6H5JNL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.860e-12
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 2 
Query:    2 LRLRVPQMLWKAWPVAVASQLSYSASSRST-----------------TPGERPKAAGEGLL-----LRAVLALAGSLAKGFPDGKKAFIFAGPEG 220
            LRLR+PQ+LWKAWP+A+ASQL++S+ S S+                 T G  P +    +L     L+A+L LA  +A+  P+GKKAFIFAGPEG
Sbjct: 1854 LRLRLPQLLWKAWPMALASQLAHSSRSSSSHRRHDYHNHRRSSTSVDTCGTMPSSERRNMLETPVLLQALLGLASCVARSCPEGKKAFIFAGPEG 1948
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BLAST of mRNA_D-dudresnayi_contig9562.28350.1 vs. uniprot
Match: D7G379_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G379_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.270e-11
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 2 
Query:    2 LRLRVPQMLWKAWPVAVASQLSYSASSRS-------------------------TTPGERPKAAGEGLLLRAVLALAGSLAKGFPDGKKAFIFAGPEG 220
            LRLR+PQ+LWKAWP+A+ASQL++S+ S S                         T  G R       +LL+A+L LA  +A+  P+GKKAFIFAGPEG
Sbjct: 2810 LRLRLPQLLWKAWPMALASQLAHSSRSSSHRXXXXXXXRRGSTSVGSCGMATAGTASGRRDMLETP-VLLQALLGLASCVARSCPEGKKAFIFAGPEG 2906
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9562.28350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNL0_9PHAE1.860e-1245.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G379_ECTSI2.270e-1143.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9562contigD-dudresnayi_contig9562:9935..10975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_004850.1
Exons2
Model size247
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9562.28350.1prot_D-dudresnayi_contig9562.28350.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9562 9957..10975 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.6009037-UTR-D-dudresnayi_contig9562:9934..99561622930903.6009037-UTR-D-dudresnayi_contig9562:9934..9956Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9562 9935..9956 +
1690557959.4406118-UTR-D-dudresnayi_contig9562:9934..99561690557959.4406118-UTR-D-dudresnayi_contig9562:9934..9956Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9562 9935..9956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.6209102-CDS-D-dudresnayi_contig9562:9956..99681622930903.6209102-CDS-D-dudresnayi_contig9562:9956..9968Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9562 9957..9968 +
1690557959.4486635-CDS-D-dudresnayi_contig9562:9956..99681690557959.4486635-CDS-D-dudresnayi_contig9562:9956..9968Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9562 9957..9968 +
1622930903.6442416-CDS-D-dudresnayi_contig9562:10762..109751622930903.6442416-CDS-D-dudresnayi_contig9562:10762..10975Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9562 10763..10975 +
1690557959.456797-CDS-D-dudresnayi_contig9562:10762..109751690557959.456797-CDS-D-dudresnayi_contig9562:10762..10975Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9562 10763..10975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9562.28350.1

>prot_D-dudresnayi_contig9562.28350.1 ID=prot_D-dudresnayi_contig9562.28350.1|Name=mRNA_D-dudresnayi_contig9562.28350.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=75bp
MLWKAWPVAVASQLSYSASSRSTTPGERPKAAGEGLLLRAVLALAGSLAK
GFPDGKKAFIFAGPEGKGVGGGEG*
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mRNA from alignment at D-dudresnayi_contig9562:9935..10975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9562.28350.1 ID=mRNA_D-dudresnayi_contig9562.28350.1|Name=mRNA_D-dudresnayi_contig9562.28350.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1041bp|location=Sequence derived from alignment at D-dudresnayi_contig9562:9935..10975+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATTACGCCTCCGCGTCCCGCAGATGCTCTGGAAGGTGCGTGTTGTGTTGT
CGTCGCGCCTGAGTACTGTGACATGGAGAAATTTGGTACCGGTCGAGAAG
AAATAGGTATACCAGTAGACGGGGGAGCACGAGGAAGAAGATGCACAGAT
ATTTGCCCTTGTGGCAAAGCCGAAGAGAGTATATACTCACATAGTGGGAG
AATGTGAACTGTGCAAATGAGGAACAGGATGTGTTGGAGGAGAAGATGAG
GTAACTAGACGGGTGTGACATAGAGAAGTTGGGTATACTAGATAGCCGCG
AGATAAACGATCGCTAGTCGTAATGTAGATGGTAACTACAAAAGGCGAAA
CGGGACGGGGATAAGAGAAGCAAAATATTTTTTATGTGTAAATATGGCAA
AAACGTAGTAAAGAGAGCCCAAATGTTGGAGGTGTCTCTCATTAGGTGTA
GGAACGGTCCTCCGTCTCGAAAGGCGTGCGTGGTCAATGGCCAAATGACT
AAGGAAAGGCAAGCAACAAATGAGTACGCCCCGCGCCCCCCGCCCCCAAC
AGAAAGGGGATAAGATAAGCAAAAGGTTTTTTTTTTATGTAAGATACGAA
AAAAACGTAGACAACGCCCAAATGTTGGAGGTGTCTCTAGAAGTAGGGAC
GGTGCTCCGTCTCGAAAGGGATGCGTGGTCAATGGTCAAATGACTAAGGC
AAGCAGCAAATGAGTACCCCCCCCGCGCTCGCCGTCTCCAAAGGGGTGTG
TGATCAATGGTCTGATGGCTAAGGCAAGGAACAAACGAGTGCGCCCCCTC
CCCCCCCCCAAACACACTCCCTTACCAGGCATGGCCGGTTGCAGTTGCCT
CTCAACTTTCCTACAGTGCTTCTAGTCGTTCCACGACTCCTGGAGAGCGG
CCGAAAGCGGCCGGCGAAGGACTTCTGCTTCGAGCGGTTCTGGCCTTGGC
GGGATCCCTTGCGAAGGGTTTCCCTGATGGCAAGAAGGCGTTTATCTTCG
CGGGTCCTGAGGGTAAGGGAGTGGGTGGGGGTGAGGGGTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9562:9935..10975+

>mRNA_D-dudresnayi_contig9562.28350.1 ID=mRNA_D-dudresnayi_contig9562.28350.1|Name=mRNA_D-dudresnayi_contig9562.28350.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at D-dudresnayi_contig9562:9935..10975+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCTCTGGAAGATGCTCTGGAAGGCATGGCCGGTTGCAGTTGCCTCTCA
ACTTTCCTACAGTGCTTCTAGTCGTTCCACGACTCCTGGAGAGCGGCCGA
AAGCGGCCGGCGAAGGACTTCTGCTTCGAGCGGTTCTGGCCTTGGCGGGA
TCCCTTGCGAAGGGTTTCCCTGATGGCAAGAAGGCGTTTATCTTCGCGGG
TCCTGAGGGTAAGGGAGTGGGTGGGGGTGAGGGGTAGGCATGGCCGGTTG
CAGTTGCCTCTCAACTTTCCTACAGTGCTTCTAGTCGTTCCACGACTCCT
GGAGAGCGGCCGAAAGCGGCCGGCGAAGGACTTCTGCTTCGAGCGGTTCT
GGCCTTGGCGGGATCCCTTGCGAAGGGTTTCCCTGATGGCAAGAAGGCGT
TTATCTTCGCGGGTCCTGAGGGTAAGGGAGTGGGTGGGGGTGAGGGGTAG
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