mRNA_D-dudresnayi_contig9558.28347.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9558.28347.1
Unique NamemRNA_D-dudresnayi_contig9558.28347.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9558.28347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9558contigD-dudresnayi_contig9558:8256..9576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size364
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9558.28347.1prot_D-dudresnayi_contig9558.28347.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9558 8398..9552 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.1885512-UTR-D-dudresnayi_contig9558:8255..83971622930903.1885512-UTR-D-dudresnayi_contig9558:8255..8397Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9558 8256..8397 -
1690557959.3028293-UTR-D-dudresnayi_contig9558:8255..83971690557959.3028293-UTR-D-dudresnayi_contig9558:8255..8397Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9558 8256..8397 -
1622930903.2479875-UTR-D-dudresnayi_contig9558:9552..95761622930903.2479875-UTR-D-dudresnayi_contig9558:9552..9576Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9558 9553..9576 -
1690557959.3336713-UTR-D-dudresnayi_contig9558:9552..95761690557959.3336713-UTR-D-dudresnayi_contig9558:9552..9576Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9558 9553..9576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.2096276-CDS-D-dudresnayi_contig9558:8397..85551622930903.2096276-CDS-D-dudresnayi_contig9558:8397..8555Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9558 8398..8555 -
1690557959.3128226-CDS-D-dudresnayi_contig9558:8397..85551690557959.3128226-CDS-D-dudresnayi_contig9558:8397..8555Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9558 8398..8555 -
1622930903.227917-CDS-D-dudresnayi_contig9558:9512..95521622930903.227917-CDS-D-dudresnayi_contig9558:9512..9552Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9558 9513..9552 -
1690557959.323194-CDS-D-dudresnayi_contig9558:9512..95521690557959.323194-CDS-D-dudresnayi_contig9558:9512..9552Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9558 9513..9552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9558.28347.1

>prot_D-dudresnayi_contig9558.28347.1 ID=prot_D-dudresnayi_contig9558.28347.1|Name=mRNA_D-dudresnayi_contig9558.28347.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=66bp
MSVKCLHYVACPTGFLQTQAIDAELASPGQDALVVTIPISSLHSLGAYIV
GRYHHNCLSCPPSLA*
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mRNA from alignment at D-dudresnayi_contig9558:8256..9576-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9558.28347.1 ID=mRNA_D-dudresnayi_contig9558.28347.1|Name=mRNA_D-dudresnayi_contig9558.28347.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1321bp|location=Sequence derived from alignment at D-dudresnayi_contig9558:8256..9576- (Desmarestia dudresnayi DdudBR16 monoicous)
ACGGTCGATGTCGGACCTCAGCAAATGTCTGTCAAATGTCTGCATTATGT
GGCCTGTCCCACAGGTCTGTTGGAGTCGAAGCGGCTGCGGGCCTAAACAC
CTTTGCGCATCCTTATTACTTAATACCGTAAGGTTCGTCGAAATTCAGTA
CTTTAATCAAGTGATTTTTCGTCGTCCCTCCGTTGCCTGTTCTTTTTATT
TTTTGCATTGCGTACGGAGGATTGTGTTGGGTGACTTGAGGTGGGTTGGG
TCGGGGTAGGATGTCACTTACCCTTCGAGCGCACATTACATGGGCAACGC
CGTGGTGCCTACTGGTACGATATTATGGTCGGAGTTCGGCTTGACTGGAG
GCAACGTTGAGGGTGGATGTTAACATCATGTACTCTCGGTCGATGTGCTT
GCAGGGTTGGAATATAGGCGATTCATTTACAATCAAAACGGCTGCCGGTG
CCTATGTGTGCGAGCGAAATTCCACCCGCCCGCCTCCTTGCGTGCACAGA
AAGAAAGGTGATCGCGAGAGCATGTTTGTTGTTGGCAACAAAACTCAATA
GGCATTTACCATCATTCTCGTTTAGCACGTCACGTCCGTATCCTCCAAGC
CCTTTGCCGCTATTGTCTCCGCCTCAATTGACCCTCTTTCCAGTTTGCGC
AGTAGCATCAATCAATACGAACAGGTACTCCTCGGGTACTCCTTTGTTGG
TATTAGTTCGACCAGATCGTGCAGGTTTTGCGAAAAATTTGCGAAAATCC
CCGCATTAGTTCGGAACCAGTGCTAGCTTATTCGGTCGGGCCGTAAGCAA
CAACAAACCTAACAGCATCGTATATGCCAGTTATTTTGAAGCGCACAGGC
ATCAGACGTTCGTGAACGAAATCACTGCTGTATTCAGACCTACGGCAAAT
AAACTCTCTCATCACCAGTCCAACACCACATTGCCCTTGCCTTCCTTGTG
TGCCCTCATCCTGATCACAGCAGAAGACACGGTAACCCGCCGCAAAACGT
TATGTCCTCCCACGTCTCCAGGTTTTCTGCAGACCCAAGCAATCGATGCC
GAGCTGGCAAGCCCTGGCCAAGACGCACTCGTCGTGACTATACCCATTAG
TTCCCTTCACAGCCTGGGGGCGTACATTGTAGGTCGCTACCACCACAACT
GCTTGTCTTGCCCGCCGAGTCTCGCGTGATGATGCTTTCCTTATCGGCTG
ACGCGTGATCCGAACCCTGCGTCTTCTTTTTCCAGCTTTCTTTTTTCTTT
TTAATTTCATACTTCGAGTATACCCTTCTCGCCATTTTATCCTGTAGAGT
AAGGGACACCCCAGGAGAGTC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9558:8256..9576-

>mRNA_D-dudresnayi_contig9558.28347.1 ID=mRNA_D-dudresnayi_contig9558.28347.1|Name=mRNA_D-dudresnayi_contig9558.28347.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at D-dudresnayi_contig9558:8256..9576- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCTGTCAAATGTCTGCATTATGTGGCCTGTCCCACAGATGTCTGTCA
AATGTCTGCATTATGTGGCCTGTCCCACAGGTTTTCTGCAGACCCAAGCA
ATCGATGCCGAGCTGGCAAGCCCTGGCCAAGACGCACTCGTCGTGACTAT
ACCCATTAGTTCCCTTCACAGCCTGGGGGCGTACATTGTAGGTCGCTACC
ACCACAACTGCTTGTCTTGCCCGCCGAGTCTCGCGTGAGTTTTCTGCAGA
CCCAAGCAATCGATGCCGAGCTGGCAAGCCCTGGCCAAGACGCACTCGTC
GTGACTATACCCATTAGTTCCCTTCACAGCCTGGGGGCGTACATTGTAGG
TCGCTACCACCACAACTGCTTGTCTTGCCCGCCGAGTCTCGCGTGA
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