mRNA_D-dudresnayi_contig9558.28346.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9558.28346.1
Unique NamemRNA_D-dudresnayi_contig9558.28346.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9558.28346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9558contigD-dudresnayi_contig9558:1735..7937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size195
Cds size108
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9558.28346.1prot_D-dudresnayi_contig9558.28346.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9558 1767..7882 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.0557346-UTR-D-dudresnayi_contig9558:1734..17661622930903.0557346-UTR-D-dudresnayi_contig9558:1734..1766Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9558 1735..1766 +
1690557959.263728-UTR-D-dudresnayi_contig9558:1734..17661690557959.263728-UTR-D-dudresnayi_contig9558:1734..1766Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9558 1735..1766 +
1622930903.1297014-UTR-D-dudresnayi_contig9558:7882..79371622930903.1297014-UTR-D-dudresnayi_contig9558:7882..7937Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9558 7883..7937 +
1690557959.29383-UTR-D-dudresnayi_contig9558:7882..79371690557959.29383-UTR-D-dudresnayi_contig9558:7882..7937Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9558 7883..7937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.0797036-CDS-D-dudresnayi_contig9558:1766..18391622930903.0797036-CDS-D-dudresnayi_contig9558:1766..1839Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9558 1767..1839 +
1690557959.2753167-CDS-D-dudresnayi_contig9558:1766..18391690557959.2753167-CDS-D-dudresnayi_contig9558:1766..1839Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9558 1767..1839 +
1622930903.0992572-CDS-D-dudresnayi_contig9558:7847..78821622930903.0992572-CDS-D-dudresnayi_contig9558:7847..7882Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9558 7848..7882 +
1690557959.285516-CDS-D-dudresnayi_contig9558:7847..78821690557959.285516-CDS-D-dudresnayi_contig9558:7847..7882Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9558 7848..7882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9558.28346.1

>prot_D-dudresnayi_contig9558.28346.1 ID=prot_D-dudresnayi_contig9558.28346.1|Name=mRNA_D-dudresnayi_contig9558.28346.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=36bp
MATDYCCCYSRCESLTYTSYIILGISNVYLVYNTW*
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mRNA from alignment at D-dudresnayi_contig9558:1735..7937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9558.28346.1 ID=mRNA_D-dudresnayi_contig9558.28346.1|Name=mRNA_D-dudresnayi_contig9558.28346.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=6203bp|location=Sequence derived from alignment at D-dudresnayi_contig9558:1735..7937+ (Desmarestia dudresnayi DdudBR16 monoicous)
TACAGACGACTGTGTTACCTAGCAGCTACCTGATGGCTACTGACTACTGC
TGCTGTTATAGTAGGTGTGAGTCTCTAACGTATACCTCGTATATAATACT
TGGTAGTAACCCTGAAATAGTATACCCCATGCTGCACCGTAATCTCATAT
ACGTATAATACAAGGCGTTGACTTTCATAGGCGATGTGCTGTCTATTTCT
TAACACTCCCCCTCAATGCAAGTCGCAATGCAAAAGTGACAAATGTCTCA
AGTAAGTAAGTTACTTGATGGAATGTCGTTCCAAAGGTGTGTCCTCTTCC
ATCCTAAACAACTTTAAGCTTGTGAAATGAAACGTTGTTCCAAACGTGTA
TCCTCTTTCACTGTTGCCTACAATCAAATATCAATCAATGCAAAACACCA
AACAAACAAACAAAATAACAAACTTAAACGGATAACTCCCCCGTTCGCGC
AAAAATATCAAGAAAAGAAAACAAAACCCCCCCAAAAAACTCACACCTCA
AGCTCTGAACTCACTGATTAGTTTGAGGAGGTAGCGGTGCCTGTGTTTAC
TGAGGTGCTTGGTGCCGACGTCCGCAAGTTGATCCTCTGTCTTGACGTAA
TGGATGCTGATCTTTCCCTCTTTGACCAGCTCCTGGATGAAGAAGTAACG
CAGCGCCACGTGCTTGACTCGCGAGCTGTAAGTCCGATTTCCGGCGACGC
GGAGAGCCGAGGTGTTATCGATGTACAGCGGTACGCAGTCGAAGCGTGTG
CTGAATCCCAGCTCCTTCATCATATCCGAGCAGAACACCGCCTCCTTCAT
TGTTAGCGCCGCGGCCACGAGCTCTGCCTCCATCGTGGACTGTGCTGTCA
GCCCCTGCACCCCCACCTTGAAGCTCACGGGCGCATTCGAAAGGAAGACG
AAATACGAGGACGTCGACTTTCCGTTATCCGGGTTGTTGCCCCAGTTCGC
ATCCGAAAACACCGTCAACCTGAAACCCCCTTGCTTGTATGTCGCCCTGG
CGTATAGGATGTCGTAACGAGTCACCTGTCCGAGGTACATGACGCTGCCC
GTGATGGCCTGGAAACGCTGCTTGTCTTCCTTGTTCAGCAGCATCTCCTC
TGGTTGGTCCAGCCAAAGCTCTTTTCCCACACCAGGTGTGTAAGTAGGAT
TGCAACTTGCCATACCGTACCGCTTCAGCAGCGACCTGGTGTAATTTTGC
TGGGTGATGGTCACCGTCCCCTTCTCGCGGTCACGGGTAACACCCATCCC
GAGCACTAGCGACACGTCTCCCATGTCCGTCATTGAAAAACGGCTCATCA
GCTTCTGCTTGATCCGCTCGAGTACGGCGAGGTCTTTTCCGAGCAGTAGA
ACGTCATCAACGTACAAGGTCAAAATGACGATGGTGCCGCCCTCCGAGTA
GGTGTAGACGCACGGGTCCGATTGGAGACTTTTGAAGTCGATCCCTACCA
GATGTTTGTCGATCGTGCTCCACCAGTTGGTTTGGCTCTGGCGGAGGCCG
TACAGGCTCTTAAGAATCCTCATCACCAGCGGAACACCGTTTTTGTCGAA
CTCCTCGTATCCTGGTGCCATCTTGACGTACACTTCCTCCTTGACATCTG
CGTTCGGAAACGCGGTGTTGTAGTCGAGTTGCCAGCACTCCAGATTGTGC
TCCGCCGCTATCGCCAGCACTCCAGATTGTGCTCCGCCGCTATCGCCAGC
ACCATGCAGATGCTTTGGAGCTTGCAAACGGGTGCAAACGTGCTGCCGCA
ATCAATACCAGACAATTGACCCCACCTCAGTACAACAACGCGTCCCTTGT
GCGAGTTGTCGGCCTTGACCTTGTAAAACCATCTGCTGCCGATGATCTTG
TGTCCAGTCGGGACAGAGGTCGCCGGCAGGTGGGTGTAGACGTTGTTCCT
TTTTAGGCTTGCCACTTCCTTGTCTGAGGCCGCCTTCCACTGCGCCTTGG
CCGGTAAAGTCATGACCTCTTTGAACGTGTTCGGAATAATTTCTGCTTTC
TCCCCCGCCGAGCAGTTTGAAAAGTTGGTTGCGGCGTATGCGTACTCCAC
CGCAGACTCCGCGCTATATGTCTCATGCGCGATATCCGGCAGAGTCGCCT
TGGTATAAGCCTCAGCCCCCGGATCTCAGACAGCGCGCTCCCGGTGGCGA
TTGTCGCTAGGTGAGCAGAATTCGAACGGTTGTTGGCGAAACACTCCACG
AAGGAGCGTGCTGCAGTGCCCGCACGCGTAACCGCAGGTGTGACCTCTCG
GCGCGGATGCCCCCGGTGTTGGAGTGGCGATGATCCAGCTATCCGTGTTT
CCAGGGAGGCTCCCGCGGGCGGCAATGGCTGCTCTGGCGGGTCCAGACCG
CCCTCCGGCGGCGCTCCCCCCTGCAGAGCCGGCTCCTGCAGTAGCCCTGC
AGCTCGTCCGTGCAACGTGTCCCTCTTGGTGATCTCGCTAATTCTCTCTG
AGAGTTCAGCCACCTGCAGGTTTGCTGAAACCCCATCCACGGTGATGTGG
TCGGCGGAAGCGCTAGGAGGGGATCCCAACACCGAAGTGTAGTCGCGAAG
ATCCCGCAGGAAGTCGTCGTCTGTGATGTAGTTGTGGTCATCAACTCCGT
TGCTCCTCCGAAGAATCTGCGGCGGGGTTTCCTCCAACGGCGGCGGGAGT
AGGCGCGATGGCGTTTCGATGAAGATGACGTTTCTGGGGTGACCGGATTG
TACACGCGGTAGCTCTTGCTGTTGGTGCTGTAACCTACCAGCCGTCCTTC
CACTGCCTTCGGTTCTAGCTTCTTCGTGTACGTCTCGATGTGCACAAAGG
CCCTGGTACCGATGACTCGAAGCGGTCGCAAGTCCGGCTCCGTTCCGTGT
AGCATCTTGTAGGGGGACTGCATGCCGATCGCAGAATGCGGAGCCCTGTT
GCCCAGAAATGCCGCCGTGAACATCAATTCGCCCCACACAAACTTTGGCA
GTCCGCCGTCGGTAAGCATGCACCGAACCATAGCCGCGAGAGTTCTTACG
ACCCGCTCGGACATACCGATTTGTTGTGGCGTGTTGGTGCTGGCGTATTG
GAGCGACACCCCCGTTTGAAGACAATAGTTTAAAAACGCCTTGCCGATGA
ACTCGCCCCCTTTGTCGGCCCTCAAACGCTCAACGCGGAAACCGCTAGGA
ACCACCACAGATTGTACGAACGACTGGAACGAGCTGAGAGCGTTGTGCTT
GGACTTCAGTAGGTAAGTCTCCGTCCACTTGGTATGTTCGTCGGAGATCT
TGGTGACATACTTGTAGCCTCCGAGCGCCTCTGGCGTTAAGGGTCCCATC
AGATCTACGAAGACCAGCTGGAAAGGGTGCTTGACATTGTGATCTACCGT
CTTGGGGAGGGCCAGCTGGTGACTCTTCCCTACGGCGTACACGTCGCAGT
CTGGCACGGGCCCGTCGAAGCTCACTCCGTTGCTGTCCAGTTTCTTCAGG
GGGTTTTGGCTTTTGCGGTTGAGGTGTCCCAGGCGCCGATGCCACAGGGT
GGCGTTAGCCGCAGCTTGCATTGCCAACTCCCGCGTGCCGGTCCCGTCGG
TGAGATCCAGCGAGAAAGAGTAGAGGTCGGACCCCAGCTCTTGAAGTGGA
AGTACGAATCGGTTCGACTCCAGCCTTGGGTTGTTCATGTCAAAAACAGA
CACAACGCCGTTGCGAGCAGCTTGCTTGACAGAGAACAGGTTGCGCCCTC
AGCCAGGCACAACCAAACACGAGAGGTGGACCAAGTGCCGCACTCCTTTG
TCGTCGATGACATTACCACGGAGCAGTTCTGTCGCAACACCATCCAGCTG
CCCCCCCCCGCAGTTGAAATTTTGCGCGGCACGTCCAACACCTCGTAGTT
GTCCAGCTTGTCCTGCAATCCGGGGATGATGGCGTCGTCGAAATAGTGTC
CCGATGCACCACTGTCCACCAGCACGTTTACGGAGCCGTTGCTGCTTCCG
TGTCGCGGCCCCGCGGCGGGACCTGCCTTCAGAGCCGACCCATCCTCCGC
GCTGGTGACGCCTCCGAAAGTTTCGGGCTGTCCATTGGCTACACGGGCAT
ATAGGGAGCTGTCAATGGAGAGCCATAGATGGTGGATCATGGCAACCATC
GCCAGAGCACGGATCATAGCCGCCAGACTCCCGGTGATGCGCTCTGGAAG
CCCCAGCTCCTGCACTGGTCCTCCCTCAACAATGAAGGCCGAGCCGCCAG
TCTCTTCACCGGTGACGCCACCGAAAGCTCCGAACATCCCGCTGGTGTCG
ACTGGTTCAGTCGTGGGGCGGAACGGCCAAAATGCCTCCTCCTCCGGTGG
TGCTTCCACCGCGGTAAACGAGATGGGGTGTGCTGGGTCGTAGCTGGATG
GGGGGTCATATACACCGAGGGCGGTAGCATAGCTCGAGTGAGTGGCGCAA
TTAGCGCCCCCCTCGGTGTTCCCGCTACCATGCTGTATACGGCAATCCGC
GTCGCTGTGCGTAGTTGATTTATGACATGAGCACCACTGGCTGCTGTTTC
CCCAACTCCTCGCTTCCCTTCGTCCCGCCTTTGCGTCGCGAGGGGGGTGC
TGTTGATGCTGACCGTGTTGACCCCACTGATTTGATACAGCCCGGCTCTC
CTTCGCCTTCAGGGTGACGCAGTCTTGTAATAGATGTCGACACATTTGCA
GTAGTTGCAGAGCACGTCGCTGCCGTTATGCCCCATCGCCTGCATGGTGA
TTCCACGGCCTGCGACTGGTTTAAAGTTTGAAGGACGAGAAAGATTGTCG
ACGTACATGGTGTGCACCATGTGCCGAATATCGTCCAGCCCAAAGTCCCT
CCTCTCGTAGCTGGCGATGCGCACTCTCTCGTACTCCGCTGGAAGAGCTT
GAAGAATGATGTCCTCGTACCGCTCATCGTGCACCGGCTGCCCCATTTTC
TCGAGGAGATCACGGCATTCGTCCATAACAAAAAAGAAATCGTCGGGATC
CTTGCCGGGCTCCATCTTAGTGTTGACCAGCTTCTCGTGGCTTGCCCTTC
TAGCCTCCTTGGTGTGGCTGTTGTACTTCTCATTCAAAGCCTCCCAGGCC
GCCTGTCCGTGCCCTGCACCGTCTTCCCGTTGCTTGCCCTCGAACATCTT
AACGACGTTGTTTGCGGAGCTGGATGTGGTGAGAAACAGAACGCTCCAGA
GATCTTGGTTCGCTTGCTTCCACGTGTGCGCTCAGCGATGGCATCGAGCG
TCCCCGTGTCAGCGATGCTCCTGGTAGAGGAAGGCTGGGCCTTGCCTTGA
AACACTTCGAAAACGGACTTGTACAGCGAAAAACAGACACGAATTTCGCT
CTTGTACTCTTGAAAAGTGTTTTTGTCCCTGCCGGCGAAGACTGGGCAGT
TTTTACTGACCGCTTGGGTGTTGTTGGACGCAACGTTCTCCATGACGACC
ACTCCACGCTAAGAAGCGGATATGCTCCTGCTAGGTAAAATAATAGTAGT
GCACTAACCCGAGTCTGTGTCGTCGGGCGGCTGAAGTCACGGGAACCGAG
CTGTGATGTCGGCCCGCTAAAAAACAAAAATCACGCTGAACAACTGTTGT
GTGTAAAATCCCCAGCTGCTGCTCCAGCTCCGGGTCCACGAAGGCCTGTG
AGCGCGCCGTGCTAAAACAAGGCTCAAAACCTATTGAGAATATCCGAGGA
TACTCCCGCAGATAGCTGCAAAGGTTGGCGCTGGTAGTCGTTAGACTGAC
CGAGCAGACACGCTGTGTCGAGGATGCGAACAGTTGGTGATGCTTGAAAA
AGGGCCGCTTGAGGGCAAGAAAAAATTAAGACGATGAACTGTGAGAAGTT
CAGATGCGTGTGAGCAGAGGGGTGCGAGGAGCACGCTTGCTTGTCACAGC
TCGACAACAACACGGAGACCCTAGAACCGCAGAAGGCCAATACCGAAGAC
CTCTTGGGACTCTCGGTAGTTGGTAGTATACTATTTGTAGACGAAAAGAC
ACGTTGATTGTGCCGCATACACAATCGGTACCTGACATACCGCACTGCTT
GTATCGCCACAGCATTTTGTGCTGATGATACAGCCTGCTAGCTACAGACG
ACTGTGTTACCTAGCAGCTACCTGATGGCTACTGACTACTGCTGCTGTTA
TAGTAGGTGTGAGTCTCTAACGTATACCTCGTATATAATACTTGGTAGTA
ACCCTGAAACAGTATACCCCATGTTGCACCGTAATCTCCTACACGTATAA
TAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9558:1735..7937+

>mRNA_D-dudresnayi_contig9558.28346.1 ID=mRNA_D-dudresnayi_contig9558.28346.1|Name=mRNA_D-dudresnayi_contig9558.28346.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at D-dudresnayi_contig9558:1735..7937+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCTACTGACTACTGCTGCTGTTATAGTAGGTGTGAGTCTCTAACGTA
TACCTCGTATATAATACTTGGTAATGGCTACTGACTACTGCTGCTGTTAT
AGTAGGTGTGAGTCTCTAACGTATACCTCGTATATAATACTTGGTATCTC
TAACGTATACCTCGTATATAATACTTGGTAGTCTCTAACGTATACCTCGT
ATATAATACTTGGTAG
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