mRNA_D-dudresnayi_contig9557.28345.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9557.28345.1
Unique NamemRNA_D-dudresnayi_contig9557.28345.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig9557.28345.1 vs. uniprot
Match: D7FWR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR7_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 4.450e-94
Identity = 156/235 (66.38%), Postives = 190/235 (80.85%), Query Frame = 1 
Query:    1 HKTNTVKDLHAAIRTKRMIRCFVCCTKARLLILKLLWDRVEGEVLGERRTKRAAVESRAAVTVTQIAHIRRIAVGLIKLQSSAKTFKLEHQSKQAKKKSMASA-------ASRNKRGVVKGVYETAKQARSEQNECDAILRDHGRRGRRLVDMAVRDKFLTDLLYSYRRQHVVRDLSEYLMETNRPPFVDSRDVKRMLACPMEEMHMFSDPTNYRTRPRYTRFVLPFREIEGLIQ 684
            H+   + D H  IR KRM+R F+CCT+AR L+L+LLWDR EG +LGERR+KRAAVESRAA TV Q++HIR++AVGLIK+Q+SA+ FKLE Q++QAK+    +A         R++ G    V++TAKQARSE+ EC+AILR+HGRRGRRLVD+AVRD+FL DLLYS+RRQH++RD  EYLMET+RPP VDSRDVKRML CP EEMHMFSDP NYRTRPRYTR  LPFREI G+IQ
Sbjct:  815 HRAKKLHDRHVTIRLKRMVRGFICCTQARFLLLQLLWDRTEGNILGERRSKRAAVESRAASTVQQLSHIRKLAVGLIKIQNSAEAFKLEQQARQAKRNPKKTAKPSGDKHGGRHQGGGGGRVFDTAKQARSEKAECEAILREHGRRGRRLVDIAVRDRFLRDLLYSHRRQHIIRDQREYLMETSRPPLVDSRDVKRMLECPAEEMHMFSDPMNYRTRPRYTRLALPFREIGGIIQ 1049
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9557.28345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWR7_ECTSI4.450e-9466.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9557contigD-dudresnayi_contig9557:7011..11113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size684
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9557.28345.1prot_D-dudresnayi_contig9557.28345.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9557 7011..11113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930902.9066098-CDS-D-dudresnayi_contig9557:7010..71721622930902.9066098-CDS-D-dudresnayi_contig9557:7010..7172Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 7011..7172 -
1690557959.2122283-CDS-D-dudresnayi_contig9557:7010..71721690557959.2122283-CDS-D-dudresnayi_contig9557:7010..7172Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 7011..7172 -
1622930902.9210138-CDS-D-dudresnayi_contig9557:8714..88341622930902.9210138-CDS-D-dudresnayi_contig9557:8714..8834Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 8715..8834 -
1690557959.222274-CDS-D-dudresnayi_contig9557:8714..88341690557959.222274-CDS-D-dudresnayi_contig9557:8714..8834Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 8715..8834 -
1622930902.9421127-CDS-D-dudresnayi_contig9557:9691..98591622930902.9421127-CDS-D-dudresnayi_contig9557:9691..9859Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 9692..9859 -
1690557959.232376-CDS-D-dudresnayi_contig9557:9691..98591690557959.232376-CDS-D-dudresnayi_contig9557:9691..9859Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 9692..9859 -
1622930902.958254-CDS-D-dudresnayi_contig9557:10085..102381622930902.958254-CDS-D-dudresnayi_contig9557:10085..10238Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 10086..10238 -
1690557959.2417796-CDS-D-dudresnayi_contig9557:10085..102381690557959.2417796-CDS-D-dudresnayi_contig9557:10085..10238Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 10086..10238 -
1622930902.9760795-CDS-D-dudresnayi_contig9557:11032..111131622930902.9760795-CDS-D-dudresnayi_contig9557:11032..11113Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 11033..11113 -
1690557959.249997-CDS-D-dudresnayi_contig9557:11032..111131690557959.249997-CDS-D-dudresnayi_contig9557:11032..11113Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 11033..11113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9557.28345.1

>prot_D-dudresnayi_contig9557.28345.1 ID=prot_D-dudresnayi_contig9557.28345.1|Name=mRNA_D-dudresnayi_contig9557.28345.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=228bp
HKTNTVKDLHAAIRTKRMIRCFVCCTKARLLILKLLWDRVEGEVLGERRT
KRAAVESRAAVTVTQIAHIRRIAVGLIKLQSSAKTFKLEHQSKQAKKKSM
ASAASRNKRGVVKGVYETAKQARSEQNECDAILRDHGRRGRRLVDMAVRD
KFLTDLLYSYRRQHVVRDLSEYLMETNRPPFVDSRDVKRMLACPMEEMHM
FSDPTNYRTRPRYTRFVLPFREIEGLIQ
back to top

mRNA from alignment at D-dudresnayi_contig9557:7011..11113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9557.28345.1 ID=mRNA_D-dudresnayi_contig9557.28345.1|Name=mRNA_D-dudresnayi_contig9557.28345.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4103bp|location=Sequence derived from alignment at D-dudresnayi_contig9557:7011..11113- (Desmarestia dudresnayi DdudBR16 monoicous)
CACAAGACCAATACGGTCAAAGATCTACACGCTGCGATTCGCACCAAACG
CATGATTCGGTGCTTTGTATGCTGTACGAAGGTAAGTAAGGCACGAATAC
CAATATGATTGTCATCCGCCAATGTGCAGCGCATATTCCAATAGCGTAAG
ACATATACTTCGTATATTCGTACACCTTCCTCCGCAGCACAGTCAGTTGA
GAGGTACACAGCAGAGAGAGGGAGTGGGGGAGGCACGAGTATGTTTCAGC
ACACAGTGCGGTGCGGCGTGTTTTGGTGAGTTGCTGCACATACATCCCGC
GGACATCAAAACGTTTAGTAGTGAGATACCCCCCCCCCCGTAATCATGAA
GCTACAGATGACGAAGGTCATTTCGTTTCTAATTGAAAAGCCGATTTACT
TTTTATCAAATTACGTTTACATGATTCACACCGGTGGATACGTCCGCTTT
GCGAAGAAAAACAAAAGTTACGATATTTTCCGCAAGGGGTTTCTGTACAA
AGAAAAGGTTGTGGTGATCTTCACAGAGGGTCCCCGCTTTCCACGGAGCA
TAAGTCTCATTCTTCTACTACACAGTAGTAGCCTCGCCCACTACTTAATC
CACATCCTGTGTGAAGTGGGCCTCGCTACTACAGGGTCTCTTTCTCGTTG
GCTACCACCATTTTCTTGGGGGTCTTCCATGGGGCTATCGTCTTGAAGTG
CGTACAATCAGCGTATTGCACACCCCCAGCCGCCTCCACCTCTGATCAGT
TCGGTAAAACCCTGCTGTATATTGTAGTACATACCTCCAGGACACGCCCG
GAATCAACGCAGTAACTAAGCCTACTAACGTCCGCCTAAAGGACACCCCC
TCGCCCTTCCACTGTCCGTCTAAAGGCCCGCCTCTTGATTCTCAAGCTTC
TTTGGGATAGGGTGGAAGGCGAAGTCTTGGGGGAGCGTCGGACCAAGCGC
GCCGCTGTCGAGAGCCGGGCGGCGGTTACTGTAACCCAGATCGCTCACAT
CCGGAGGATCGCGGTCGGCCTAATCAAGGTTTTTGCAAACCCAGCGTGTA
ACACTCACTCGCTCACTCACTCACTCTGTCCCATAAGTATGTCGTCGTCC
ACTTGGCAGGCTCGTAACTTTCGTTCGTTATTAAACAAACAAACAGACAA
AATAGTGTGGTGGCCACGTCGGATCCGGACACGCTAATAGCTCACTTCGC
CCCTCTCTCCCTCCCTACGTTGTTGCCCCATGCAACAACGTACACCAAGC
GCAGCTCCAAAGTAGCGCAAAGACGTTCAAGCTGGAGCACCAGTCCAAGC
AGGCTAAGAAAAAGTCGATGGCTTCTGCTGCATCGAGGAACAAGAGAGGG
GTAGTTAAGGGCGTCTACGAGACGGCCAAGCAGGCTCGCTCCGAGCAAAA
TGAGTGCGACGCGATTCTCCGGGTGACTATTTAAACGTTTAGTTTGTTGT
TTTGGATATATTTGTTTGTTTTTGTTTTGTTTGTCTACTCCGGGTAGTAG
CTATTTTAACATTTTTAATCTGCTTTTGTTTGTTTGTTTAGTCTACTCCA
CGTATTTTTCTTGAGGGGGGTGCGGGGGGGGGGAGTCGTGTTACGGTAGA
GGGGGCATATCTTGGACCTGAGATCAGCGGCTCAGGGTCACTCGTGAGAG
TGACTACCCCATATATTTGCGGTTTTCAACGTTTGCGCAATTTCGCGATA
TGAACCACCATATGATTGTTTGGTGCGCTACGCGAACAAAATGTATAAGT
ATCCTATTTTGAGCGAGATACAGAGTCACTCGGGCGAGTGACCTCCACCC
GGAAGTGAAATGAGGGGGGGAGGGGGGATACCGTAGCACGACTCGGGGGG
CTTCACCTTTGATACGTATTCACACGTGTGTTTTTTTGCCGTTTTCACTC
GTTTTTCATTGACTGTGCCTAATAATACGCCAAGAAGGAGCATTGTGCGG
TGGGTTCACACACACACAGTGAAGTTGGCTGGTTGGTTGATTCATGTGTT
TGTTTGTTGGATTGTTTAGTTGTTTGGCGAATTGCGCAATACCCAACGGC
ATGCTGTCGCCTCTGTTTGGAGGAAATTCCGAACAACAACACGAAAGTGT
CCGAGTAGAGTGTAGTGATACGAAAGCCTACCTAACAATGGTCGATAGCC
TTGTTTGCTTGAAATCCGATTTAAACAATGTTCCCGCGTGTGTATTTCAT
AACCTTGTTTGCTTGTTGATGACATCAGGCCTCAAATCGAGGCAGCCTCC
CACCGCGTGTTCATATTTCTTCTGTGTAGGATCACGGACGACGAGGACGG
CGATTAGTGGACATGGCTGTGCGAGACAAATTCCTGACGGACCTCCTGTA
CTCCTACCGAAGACAGCACGTCGTGCGAGACCTGTCCGAGTATCTGATGG
TGGGCAACAGCAATCAGAACAGCAGCTGTTGCAAACAATATAGGGATGGA
CACAAATTGCACGAATTTCATTATCCTCTGTTGTACAGTACTATAATATG
AATGTTGTTGTTATCAATAGTCTCTCTTACAACGACAGTAAAACCATATT
CGAACTATTTCGGAGCCTATTTACCCATTTTGACAAAATCGAACTATGAT
AGCTACGAAGGAACAGAAAATTAAAAATCCCTTTAAGATTTAGTCGCAGT
TTTGGCTATTTCAAATTCGGCTCTCTTTTCTTGTCGGTGAAGGTGTTACT
GCAATAATGTATAGAGCTCTCTTCATTTACGACTGTTTTATCTTTTGCTT
CAAGTTCCCGGTCTACGAGTAGCTCACAGGAGGTCAGCGTTCAGTGGCAC
CTTCTGTGCAGGCCGTGCGATGGCCACATTTGTGTCTATACCCTCTCCCC
CCGAAATATGCCTTGGTTTATATCGCGCACAAACAGGGCTCAGCATTCCC
ATACGAGTAGCTCCTCGACTTTCCTTGGATGTGCCTTTTACAAGTTTTCA
CCCCCAAACTTCCGCCAACAGGCCACGTGCTCACGCGATGTACTGTCTCC
ATACTGTACAGTAGTATTTTGCGGCCAAAAATAGGTCCACCCCCCAGGGG
GATTGGCGTCGGTTGGCATCGACGCTGTAATACACGCCACTCGCTGCGTG
AGCGCTAGACAACCACGGTGCCGTTTTTTTTCGTATTTTATTTTTTGAGG
GGTTACCATGGCTGGTTGTCGAGTAGATCATACTGTGCTGGGGTGGAGAA
TCTTAACTCCGCGCAAGTGGGATATATCACGTAGTGAATATGTAGTAAAG
CACCCACGAGGCAGTTACATAGTATACCCATGACTGCCTCTGGAAGTGGC
CACGCCAGAAAATAAATGAATTCATTCGAAGCTGTCATCCATATGCAAGA
AAGTACGAACAAGGTGCCGAAGTCCGCCTCACAATTGGTTCTTAATAGGA
CGCAGCTCCCCCTTTATGTGAATCGCCGAACACCTCATGGCGCTTCGCGC
TTGGTGCACGCGATGACTGCATGGTCGGTGAAGACCCAACGTGCTCCGTC
CCGGCATTGTAGGGATGCGAGTGTCTTATGGTCATACGACTACGGCCATG
CATGAAATGAGTACCTCCCGCCGACCCGCATTTGCGTTATTTTGCCGTCC
CCTTGCGCCCCTGACCCTGACTCCGCTACAATTTCCTAATGATACGTATT
CAGAATCGCTTTCAGCTTCTTGTGAAAGCCGTACTCTTGGCACCATGACA
TTCCGTGACCGTTTCTGTTTTCTCGACCGCATGTGGGCACGTGTTAGTAT
AATAATCAAGCAGCAGGATGTACGAAGTATATGCTTTTCTAAGGCACAAG
AACCCCGACATGAAATAAATAATTCCTCTCGGCATTCCGTTTAGCCTTAC
CCTTAATTCTTGGTGTGTGCAACTCTCTCTTTGTCTCTCACCCTCTCCTC
TCCGCCTCATCTGTCTCTCTACATCTCTCTCTTTTCATCAGGAAACTAAC
AGACCCCCGTTTGTGGACAGCCGGGACGTCAAGAGGATGCTGGCATGTCC
CATGGAGGAGATGCACATGTTTAGCGACCCCACAAACTATCGCACCAGGC
CGCGGTACACGCGCTTCGTTCTACCCTTTCGCGAGATCGAGGGATTGATA
CAG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig9557:7011..11113-

>mRNA_D-dudresnayi_contig9557.28345.1 ID=mRNA_D-dudresnayi_contig9557.28345.1|Name=mRNA_D-dudresnayi_contig9557.28345.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at D-dudresnayi_contig9557:7011..11113- (Desmarestia dudresnayi DdudBR16 monoicous)
CACAAGACCAATACGGTCAAAGATCTACACGCTGCGATTCGCACCAAACG
CATGATTCGGTGCTTTGTATGCTGTACGAAGCACAAGACCAATACGGTCA
AAGATCTACACGCTGCGATTCGCACCAAACGCATGATTCGGTGCTTTGTA
TGCTGTACGAAGGCCCGCCTCTTGATTCTCAAGCTTCTTTGGGATAGGGT
GGAAGGCGAAGTCTTGGGGGAGCGTCGGACCAAGCGCGCCGCTGTCGAGA
GCCGGGCGGCGGTTACTGTAACCCAGATCGCTCACATCCGGAGGATCGCG
GTCGGCCTAATCAAGGCCCGCCTCTTGATTCTCAAGCTTCTTTGGGATAG
GGTGGAAGGCGAAGTCTTGGGGGAGCGTCGGACCAAGCGCGCCGCTGTCG
AGAGCCGGGCGGCGGTTACTGTAACCCAGATCGCTCACATCCGGAGGATC
GCGGTCGGCCTAATCAAGCTCCAAAGTAGCGCAAAGACGTTCAAGCTGGA
GCACCAGTCCAAGCAGGCTAAGAAAAAGTCGATGGCTTCTGCTGCATCGA
GGAACAAGAGAGGGGTAGTTAAGGGCGTCTACGAGACGGCCAAGCAGGCT
CGCTCCGAGCAAAATGAGTGCGACGCGATTCTCCGGCTCCAAAGTAGCGC
AAAGACGTTCAAGCTGGAGCACCAGTCCAAGCAGGCTAAGAAAAAGTCGA
TGGCTTCTGCTGCATCGAGGAACAAGAGAGGGGTAGTTAAGGGCGTCTAC
GAGACGGCCAAGCAGGCTCGCTCCGAGCAAAATGAGTGCGACGCGATTCT
CCGGGATCACGGACGACGAGGACGGCGATTAGTGGACATGGCTGTGCGAG
ACAAATTCCTGACGGACCTCCTGTACTCCTACCGAAGACAGCACGTCGTG
CGAGACCTGTCCGAGTATCTGATGGATCACGGACGACGAGGACGGCGATT
AGTGGACATGGCTGTGCGAGACAAATTCCTGACGGACCTCCTGTACTCCT
ACCGAAGACAGCACGTCGTGCGAGACCTGTCCGAGTATCTGATGGAAACT
AACAGACCCCCGTTTGTGGACAGCCGGGACGTCAAGAGGATGCTGGCATG
TCCCATGGAGGAGATGCACATGTTTAGCGACCCCACAAACTATCGCACCA
GGCCGCGGTACACGCGCTTCGTTCTACCCTTTCGCGAGATCGAGGGATTG
ATACAGGAAACTAACAGACCCCCGTTTGTGGACAGCCGGGACGTCAAGAG
GATGCTGGCATGTCCCATGGAGGAGATGCACATGTTTAGCGACCCCACAA
ACTATCGCACCAGGCCGCGGTACACGCGCTTCGTTCTACCCTTTCGCGAG
ATCGAGGGATTGATACAG
back to top