mRNA_D-dudresnayi_contig9557.28344.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9557.28344.1
Unique NamemRNA_D-dudresnayi_contig9557.28344.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9557.28344.1 vs. uniprot
Match: A0A6H5JNQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 4.430e-23
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:   94 MSSQNRSKMGKAFAKMTLSCPQQIAGYALCLQAKSVTG-LERGACDEDFRALKLCFQTAVR 273
            MSSQNRSKMG+AFAKMT +CPQQIAGY  CLQA S  G LERG CDE F+ALK CFQ A +
Sbjct:    1 MSSQNRSKMGQAFAKMTTACPQQIAGYGTCLQAASTAGMLERGVCDEQFKALKRCFQQAAK 61
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9557.28344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNQ3_9PHAE4.430e-2373.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9557contigD-dudresnayi_contig9557:2220..3058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_006000.1
Exons2
Model size273
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9557.28344.1prot_D-dudresnayi_contig9557.28344.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9557 2313..3058 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930902.811269-UTR-D-dudresnayi_contig9557:2219..23121622930902.811269-UTR-D-dudresnayi_contig9557:2219..2312Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9557 2220..2312 +
1690557959.1848533-UTR-D-dudresnayi_contig9557:2219..23121690557959.1848533-UTR-D-dudresnayi_contig9557:2219..2312Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9557 2220..2312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930902.835436-CDS-D-dudresnayi_contig9557:2312..23811622930902.835436-CDS-D-dudresnayi_contig9557:2312..2381Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 2313..2381 +
1690557959.1935449-CDS-D-dudresnayi_contig9557:2312..23811690557959.1935449-CDS-D-dudresnayi_contig9557:2312..2381Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 2313..2381 +
1622930902.8586147-CDS-D-dudresnayi_contig9557:2947..30581622930902.8586147-CDS-D-dudresnayi_contig9557:2947..3058Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 2948..3058 +
1690557959.2023764-CDS-D-dudresnayi_contig9557:2947..30581690557959.2023764-CDS-D-dudresnayi_contig9557:2947..3058Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9557 2948..3058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9557.28344.1

>prot_D-dudresnayi_contig9557.28344.1 ID=prot_D-dudresnayi_contig9557.28344.1|Name=mRNA_D-dudresnayi_contig9557.28344.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=60bp
MSSQNRSKMGKAFAKMTLSCPQQIAGYALCLQAKSVTGLERGACDEDFRA
LKLCFQTAVR
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mRNA from alignment at D-dudresnayi_contig9557:2220..3058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9557.28344.1 ID=mRNA_D-dudresnayi_contig9557.28344.1|Name=mRNA_D-dudresnayi_contig9557.28344.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=839bp|location=Sequence derived from alignment at D-dudresnayi_contig9557:2220..3058+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTGCTTTGTGCTCTTTGTGGTTTGGTTTTGCGCTTTTCCAACCTAGGTGC
ACAACAGTAGTAGTGCACATCGCGACGCGCTCTCCATTACGAAATGTCTT
CTCAGAATCGCTCCAAGATGGGAAAGGCTTTTGCCAAGATGACTTTGTCA
TGTCCCCAGCAGGTTGGCATTCGATTGCAATCCGTGCACTTATGATAGTA
GATGTTCGTCAATTATACTGCTGTATCATAGAACAATAAAGTAGTACTAA
GGATGGGTGTGGACAGGTTCCGCCGCATTTTTTGCGCGAGCGCACGGTGG
GCATCTCAGCTGTTGGTATGACAACCTGCTGCAGGCATAACTGTCAATAT
TGGGAAGGCTACACTAATGGCCCCATCGCTATCGTAGTCGAGTCATGCCC
AAGGCCACTATACCGGACATTTTCTAGAGTAAAACTGTTCTTGCATCAAT
AGTTCGTTTTTTTACGATGGAACCGTACTTGGCCAGATAGTATCATAGCA
TCATGACGTGTTGTTGTACTAAGGCAGTAACGTACTGTCTGTTGTTGCAC
GCATGTCTCGAGGGTCCATTTTGATACCCCTCTGCCTGATCTTGAGTTGA
ACCATTCAGCCCAAAAGGAGCACTGTCGGGGCGGGAACGCTACGACGGTG
TAAGCTAGAAGGTAGAGCCCCTCCCCGCCCCCTGAAATTCACTCAAGATC
CGACTTTATCTCTGCTTTCGTGGTGCAGATCGCAGGGTACGCGCTATGCT
TGCAGGCGAAGTCCGTGACGGGCCTGGAGCGAGGAGCTTGCGATGAAGAT
TTCAGAGCGCTTAAGCTGTGCTTCCAAACGGCGGTACGT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9557:2220..3058+

>mRNA_D-dudresnayi_contig9557.28344.1 ID=mRNA_D-dudresnayi_contig9557.28344.1|Name=mRNA_D-dudresnayi_contig9557.28344.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at D-dudresnayi_contig9557:2220..3058+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCTTCTCAGAATCGCTCCAAGATGGGAAAGGCTTTTGCCAAGATGAC
TTTGTCATGTCCCCAGCAGATGTCTTCTCAGAATCGCTCCAAGATGGGAA
AGGCTTTTGCCAAGATGACTTTGTCATGTCCCCAGCAGATCGCAGGGTAC
GCGCTATGCTTGCAGGCGAAGTCCGTGACGGGCCTGGAGCGAGGAGCTTG
CGATGAAGATTTCAGAGCGCTTAAGCTGTGCTTCCAAACGGCGGTACGTA
TCGCAGGGTACGCGCTATGCTTGCAGGCGAAGTCCGTGACGGGCCTGGAG
CGAGGAGCTTGCGATGAAGATTTCAGAGCGCTTAAGCTGTGCTTCCAAAC
GGCGGTACGT
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