mRNA_D-dudresnayi_contig9556.28343.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9556.28343.1
Unique NamemRNA_D-dudresnayi_contig9556.28343.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9556.28343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9556contigD-dudresnayi_contig9556:4094..4444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003360.1
Hectar predicted targeting categorysignal anchor
Exons1
Model size351
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930902.7422624-CDS-D-dudresnayi_contig9556:4093..44351622930902.7422624-CDS-D-dudresnayi_contig9556:4093..4435Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9556 4094..4435 +
1690557959.1589253-CDS-D-dudresnayi_contig9556:4093..44351690557959.1589253-CDS-D-dudresnayi_contig9556:4093..4435Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9556 4094..4435 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930902.7652247-UTR-D-dudresnayi_contig9556:4435..44441622930902.7652247-UTR-D-dudresnayi_contig9556:4435..4444Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9556 4436..4444 +
1690557959.1718135-UTR-D-dudresnayi_contig9556:4435..44441690557959.1718135-UTR-D-dudresnayi_contig9556:4435..4444Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9556 4436..4444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9556.28343.1prot_D-dudresnayi_contig9556.28343.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9556 4094..4435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9556.28343.1

>prot_D-dudresnayi_contig9556.28343.1 ID=prot_D-dudresnayi_contig9556.28343.1|Name=mRNA_D-dudresnayi_contig9556.28343.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=114bp
PPQHRFIEEIKSKIKASRKYKHEKGGVKRVSKFPCNEGWPGHPRVAGVGC
LLFIFCCVAPDLLLCVVYFRRPTRRTSWPTITTTSVVVVTEAVTSIRILC
LLSLLHILLPLLL*
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mRNA from alignment at D-dudresnayi_contig9556:4094..4444+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9556.28343.1 ID=mRNA_D-dudresnayi_contig9556.28343.1|Name=mRNA_D-dudresnayi_contig9556.28343.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at D-dudresnayi_contig9556:4094..4444+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCACCGCAGCACCGATTCATCGAGGAGATCAAGAGCAAGATCAAAGCAAG
CAGGAAATATAAACACGAGAAAGGGGGAGTCAAGAGGGTCTCCAAGTTTC
CTTGCAATGAAGGATGGCCGGGGCACCCTCGTGTTGCGGGTGTTGGTTGC
CTTCTCTTTATTTTTTGTTGTGTTGCCCCAGACCTGCTGCTGTGTGTTGT
CTATTTTCGCCGCCCTACGCGCAGAACTTCCTGGCCGACTATCACTACAA
CTAGCGTTGTTGTTGTAACCGAGGCAGTCACTTCTATTCGCATACTATGC
CTATTGTCACTGCTGCATATTCTACTCCCACTGCTACTGTAGGGGTGAGG
C
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9556:4094..4444+

>mRNA_D-dudresnayi_contig9556.28343.1 ID=mRNA_D-dudresnayi_contig9556.28343.1|Name=mRNA_D-dudresnayi_contig9556.28343.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at D-dudresnayi_contig9556:4094..4444+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCACCGCAGCACCGATTCATCGAGGAGATCAAGAGCAAGATCAAAGCAAG
CAGGAAATATAAACACGAGAAAGGGGGAGTCAAGAGGGTCTCCAAGTTTC
CTTGCAATGAAGGATGGCCGGGGCACCCTCGTGTTGCGGGTGTTGGTTGC
CTTCTCTTTATTTTTTGTTGTGTTGCCCCAGACCTGCTGCTGTGTGTTGT
CTATTTTCGCCGCCCTACGCGCAGAACTTCCTGGCCGACTATCACTACAA
CTAGCGTTGTTGTTGTAACCGAGGCAGTCACTTCTATTCGCATACTATGC
CTATTGTCACTGCTGCATATTCTACTCCCACTGCTACTGTAGCCACCGCA
GCACCGATTCATCGAGGAGATCAAGAGCAAGATCAAAGCAAGCAGGAAAT
ATAAACACGAGAAAGGGGGAGTCAAGAGGGTCTCCAAGTTTCCTTGCAAT
GAAGGATGGCCGGGGCACCCTCGTGTTGCGGGTGTTGGTTGCCTTCTCTT
TATTTTTTGTTGTGTTGCCCCAGACCTGCTGCTGTGTGTTGTCTATTTTC
GCCGCCCTACGCGCAGAACTTCCTGGCCGACTATCACTACAACTAGCGTT
GTTGTTGTAACCGAGGCAGTCACTTCTATTCGCATACTATGCCTATTGTC
ACTGCTGCATATTCTACTCCCACTGCTACTGTAG
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