mRNA_D-dudresnayi_contig9547.28342.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9547.28342.1
Unique NamemRNA_D-dudresnayi_contig9547.28342.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9547.28342.1 vs. uniprot
Match: A0A7S3HL19_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HL19_9STRA)

HSP 1 Score: 201 bits (511), Expect = 3.370e-58
Identity = 118/268 (44.03%), Postives = 167/268 (62.31%), Query Frame = 1 
Query:    1 PVAHLYAPAVVSTCDNLTVDPTASRGFAGRKWLSVSWTVTALNIAQNAAVIQSYLNEAYRDTTAVAVVPQSLLTKSTLYNSAEYEISLQVTNFLSQTSVVKAKVRVDNGLGSIVPQLRLYGANVVTYRWKALSLYAAASYPPCAGDLS-SLPLVYSWRLYAGVTLVTSIQSFSLDQRYFKLRPYTLQASTAY--RIIADVSLNGVVLASTAGV-LQVGQSGVSAVIAGGNARTASTLEAIVLDASGSRDIDYP---STTSGLAYQWAC 783
            PV  L AP  VS C ++ +DPT S GF GR W  V W V+   IA+N+A I +YLN  + +T +VA VP S LT+ST    A Y ISL++ NFL Q++V    V+V+     I+P + + GA+    RWK++SL+A+ ++P CA + + +LP+ Y W LY   TL+ +  S S D+R+FKL  YTL AS+ Y   + A V   GV  ++TA   LQ G SGVSA+I+G  AR+ S L  +V+DAS S+D+DYP   S+ + L Y W+C
Sbjct:   96 PVVALSAPNTVSACSDIALDPTLSTGFGGRAWTEVLWVVSGSPIAENSAAIAAYLNANFPNTFSVATVPNSYLTRSTETEDATYTISLKLRNFLQQSAVTSVVVKVNGESSPIIPTISVSGADSNPSRWKSVSLFASVTWPKCASNATRALPMQYDWLLYRDSTLLRTSSS-SRDKRFFKLPAYTLDASSTYVVTVTASVRNKGVTTSATASTTLQTGASGVSALISGAAARSGSALANVVVDASLSKDVDYPPGQSSPAALTYVWSC 362
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BLAST of mRNA_D-dudresnayi_contig9547.28342.1 vs. uniprot
Match: A0A7S3M9R0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9R0_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.610e-40
Identity = 69/130 (53.08%), Postives = 95/130 (73.08%), Query Frame = 1 
Query:   97 LSVSWTVTALNIAQNAAVIQSYLNEAYRDTTAVAVVPQSLLTKSTLYNSAEYEISLQVTNFLSQTSVVKAKVRVDNGLGSIVPQLRLYGANVVTYRWKALSLYAAASYPPCAGDLSSLPLVYSWRLYAGV 486
            LS+ W V  ++ AQNA VI++YLN  Y+ TT+VA VP + LT ST Y  + YEI+L++TNF +QT+ VK  V V NG+G ++PQ+RL+GAN+   RWK LSLYA AS+P C  + S+LPL YSW++Y G+
Sbjct:    1 LSLKWMVVGVDNAQNADVIETYLNTYYQTTTSVARVPNAFLTPSTRYVDSSYEITLKLTNFFAQTAFVKVSVLVGNGIGEVLPQIRLFGANIQFTRWKPLSLYATASFPTCVQNTSTLPLYYSWKVYEGI 130
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BLAST of mRNA_D-dudresnayi_contig9547.28342.1 vs. uniprot
Match: A0A482SIG3_9ARCH (REJ domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIG3_9ARCH)

HSP 1 Score: 151 bits (381), Expect = 8.340e-38
Identity = 98/266 (36.84%), Postives = 142/266 (53.38%), Query Frame = 1 
Query:    1 PVAHLYAPAVVSTCDNLTVDPTASRGFAGRKWLSVSWTVT--ALNIAQNAAVIQSYLNEAYRDTTAVAVVPQSLLTKSTLYNSAEYEISLQVTNFLSQTSVVKAKVRVDNGLGSIVPQLRLYGANVVTYRWKALSLYAAASYPPCAGDLSSLPLVYSWRLYAGVTLVTSIQSFSLDQRYFKLRPYTLQASTAYRIIADVSLN---GVVLASTAGVLQVGQSGVSAVIAGGNARTASTLEAIVLDASGSRDIDYPSTTSGLAYQWAC 783
            P + L  P VVS+C + T+DPTAS G     W ++ W VT  +LN+  N + + S+LN  YR+T+++  +P S       + + E  I+L +TN    +S     V +   L    PQ+ +  A  V  RWK+L L A    P C  + + L + YSW++Y G   + S+ S SL      L  Y+L+ +T Y    +V L      V AS++  L VG+S VSA+I GG ART S+ + +VLDAS S D+DYP  T  L Y W C
Sbjct:   90 PFSSLVCPNVVSSCSDFTIDPTASFGAIVIPWKAIKWNVTGNSLNL-NNQSALSSFLNAGYRNTSSIVTIPHSF------FVAGEMNITLTLTNLFEISSSTTCMVMITVPLR---PQIIMSRAVNVLSRWKSLELVAGVLLPTCLSNTTGLTISYSWKVYMGTLFLPSLNSTSLRSERLVLPTYSLEVNTNYTFAVEVKLQPARSTVSASSSATLFVGRSEVSAIIIGGPARTVSSSQRLVLDASSSFDVDYPEYTQ-LRYTWRC 344
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BLAST of mRNA_D-dudresnayi_contig9547.28342.1 vs. uniprot
Match: A0A7S3HHU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHU5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.130e-5
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  625 GVLQVGQSGVSAVIAGGNARTASTLEAIVLDASGSRDIDYPSTTSGLAYQWAC 783
            G+LQ G+SG+ A I G   R+A+TL+ +V+DAS S+DIDYP  T+ L Y+W+C
Sbjct:   12 GMLQTGESGMRATITGAPIRSANTLDTVVIDASQSQDIDYP--TAPLTYKWSC 62
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9547.28342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3HL19_9STRA3.370e-5844.03Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3M9R0_9STRA1.610e-4053.08Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482SIG3_9ARCH8.340e-3836.84REJ domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A7S3HHU5_9STRA4.130e-552.83Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9547contigD-dudresnayi_contig9547:5464..6246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue3.7e-20
Seed eggNOG ortholog44056.XP_009036272.1
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size783
Cds size783
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930902.6037447-CDS-D-dudresnayi_contig9547:5463..62461622930902.6037447-CDS-D-dudresnayi_contig9547:5463..6246Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9547 5464..6246 +
1690557959.1479504-CDS-D-dudresnayi_contig9547:5463..62461690557959.1479504-CDS-D-dudresnayi_contig9547:5463..6246Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9547 5464..6246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9547.28342.1prot_D-dudresnayi_contig9547.28342.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9547 5464..6246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9547.28342.1

>prot_D-dudresnayi_contig9547.28342.1 ID=prot_D-dudresnayi_contig9547.28342.1|Name=mRNA_D-dudresnayi_contig9547.28342.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=261bp
PVAHLYAPAVVSTCDNLTVDPTASRGFAGRKWLSVSWTVTALNIAQNAAV
IQSYLNEAYRDTTAVAVVPQSLLTKSTLYNSAEYEISLQVTNFLSQTSVV
KAKVRVDNGLGSIVPQLRLYGANVVTYRWKALSLYAAASYPPCAGDLSSL
PLVYSWRLYAGVTLVTSIQSFSLDQRYFKLRPYTLQASTAYRIIADVSLN
GVVLASTAGVLQVGQSGVSAVIAGGNARTASTLEAIVLDASGSRDIDYPS
TTSGLAYQWAC
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mRNA from alignment at D-dudresnayi_contig9547:5464..6246+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9547.28342.1 ID=mRNA_D-dudresnayi_contig9547.28342.1|Name=mRNA_D-dudresnayi_contig9547.28342.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=783bp|location=Sequence derived from alignment at D-dudresnayi_contig9547:5464..6246+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCAGTCGCGCACTTGTATGCACCGGCCGTGGTGTCTACATGTGACAACCT
GACTGTGGATCCCACTGCGTCGCGAGGCTTCGCTGGCCGGAAGTGGCTGT
CTGTCTCTTGGACAGTGACTGCCTTGAACATCGCCCAGAACGCAGCAGTC
ATTCAGTCCTATCTGAACGAGGCGTACCGGGATACCACTGCAGTGGCAGT
GGTCCCACAGAGCCTGCTCACCAAGTCCACGCTCTACAACAGCGCTGAGT
ACGAAATCTCCCTGCAAGTCACCAACTTCCTGTCCCAGACCTCTGTGGTG
AAGGCCAAGGTCAGGGTCGACAATGGCCTGGGCAGCATTGTGCCGCAGCT
ACGCTTATATGGCGCGAATGTCGTAACGTACCGATGGAAGGCTCTGTCCC
TGTATGCAGCAGCCAGCTACCCGCCTTGTGCCGGGGACCTGAGTAGCCTG
CCGCTGGTTTACAGCTGGCGTCTGTACGCTGGAGTCACCCTGGTCACGTC
CATCCAGTCCTTCTCACTGGACCAGCGCTACTTCAAGCTGCGCCCCTACA
CTCTGCAGGCATCCACTGCCTACCGCATCATAGCGGACGTGTCGCTTAAC
GGGGTGGTGCTGGCATCTACTGCCGGGGTGCTGCAGGTGGGGCAATCGGG
GGTCTCTGCTGTGATTGCCGGGGGCAATGCCCGAACAGCGAGTACTCTGG
AGGCAATCGTGCTGGACGCCTCTGGCAGCAGGGACATCGACTATCCCAGC
ACCACCTCCGGCCTGGCCTACCAGTGGGCCTGC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9547:5464..6246+

>mRNA_D-dudresnayi_contig9547.28342.1 ID=mRNA_D-dudresnayi_contig9547.28342.1|Name=mRNA_D-dudresnayi_contig9547.28342.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at D-dudresnayi_contig9547:5464..6246+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCAGTCGCGCACTTGTATGCACCGGCCGTGGTGTCTACATGTGACAACCT
GACTGTGGATCCCACTGCGTCGCGAGGCTTCGCTGGCCGGAAGTGGCTGT
CTGTCTCTTGGACAGTGACTGCCTTGAACATCGCCCAGAACGCAGCAGTC
ATTCAGTCCTATCTGAACGAGGCGTACCGGGATACCACTGCAGTGGCAGT
GGTCCCACAGAGCCTGCTCACCAAGTCCACGCTCTACAACAGCGCTGAGT
ACGAAATCTCCCTGCAAGTCACCAACTTCCTGTCCCAGACCTCTGTGGTG
AAGGCCAAGGTCAGGGTCGACAATGGCCTGGGCAGCATTGTGCCGCAGCT
ACGCTTATATGGCGCGAATGTCGTAACGTACCGATGGAAGGCTCTGTCCC
TGTATGCAGCAGCCAGCTACCCGCCTTGTGCCGGGGACCTGAGTAGCCTG
CCGCTGGTTTACAGCTGGCGTCTGTACGCTGGAGTCACCCTGGTCACGTC
CATCCAGTCCTTCTCACTGGACCAGCGCTACTTCAAGCTGCGCCCCTACA
CTCTGCAGGCATCCACTGCCTACCGCATCATAGCGGACGTGTCGCTTAAC
GGGGTGGTGCTGGCATCTACTGCCGGGGTGCTGCAGGTGGGGCAATCGGG
GGTCTCTGCTGTGATTGCCGGGGGCAATGCCCGAACAGCGAGTACTCTGG
AGGCAATCGTGCTGGACGCCTCTGGCAGCAGGGACATCGACTATCCCAGC
ACCACCTCCGGCCTGGCCTACCAGTGGGCCTGCCCAGTCGCGCACTTGTA
TGCACCGGCCGTGGTGTCTACATGTGACAACCTGACTGTGGATCCCACTG
CGTCGCGAGGCTTCGCTGGCCGGAAGTGGCTGTCTGTCTCTTGGACAGTG
ACTGCCTTGAACATCGCCCAGAACGCAGCAGTCATTCAGTCCTATCTGAA
CGAGGCGTACCGGGATACCACTGCAGTGGCAGTGGTCCCACAGAGCCTGC
TCACCAAGTCCACGCTCTACAACAGCGCTGAGTACGAAATCTCCCTGCAA
GTCACCAACTTCCTGTCCCAGACCTCTGTGGTGAAGGCCAAGGTCAGGGT
CGACAATGGCCTGGGCAGCATTGTGCCGCAGCTACGCTTATATGGCGCGA
ATGTCGTAACGTACCGATGGAAGGCTCTGTCCCTGTATGCAGCAGCCAGC
TACCCGCCTTGTGCCGGGGACCTGAGTAGCCTGCCGCTGGTTTACAGCTG
GCGTCTGTACGCTGGAGTCACCCTGGTCACGTCCATCCAGTCCTTCTCAC
TGGACCAGCGCTACTTCAAGCTGCGCCCCTACACTCTGCAGGCATCCACT
GCCTACCGCATCATAGCGGACGTGTCGCTTAACGGGGTGGTGCTGGCATC
TACTGCCGGGGTGCTGCAGGTGGGGCAATCGGGGGTCTCTGCTGTGATTG
CCGGGGGCAATGCCCGAACAGCGAGTACTCTGGAGGCAATCGTGCTGGAC
GCCTCTGGCAGCAGGGACATCGACTATCCCAGCACCACCTCCGGCCTGGC
CTACCAGTGGGCCTGC
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