mRNA_D-dudresnayi_contig947.28276.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig947.28276.1
Unique NamemRNA_D-dudresnayi_contig947.28276.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig947.28276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig947contigD-dudresnayi_contig947:20546..20971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size286
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig947.28276.1prot_D-dudresnayi_contig947.28276.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig947 20546..20964 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930893.223715-CDS-D-dudresnayi_contig947:20545..205991622930893.223715-CDS-D-dudresnayi_contig947:20545..20599Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig947 20546..20599 -
1690557955.3920214-CDS-D-dudresnayi_contig947:20545..205991690557955.3920214-CDS-D-dudresnayi_contig947:20545..20599Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig947 20546..20599 -
1622930893.2463844-CDS-D-dudresnayi_contig947:20671..207281622930893.2463844-CDS-D-dudresnayi_contig947:20671..20728Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig947 20672..20728 -
1690557955.400101-CDS-D-dudresnayi_contig947:20671..207281690557955.400101-CDS-D-dudresnayi_contig947:20671..20728Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig947 20672..20728 -
1622930893.2632298-CDS-D-dudresnayi_contig947:20796..209641622930893.2632298-CDS-D-dudresnayi_contig947:20796..20964Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig947 20797..20964 -
1690557955.4157667-CDS-D-dudresnayi_contig947:20796..209641690557955.4157667-CDS-D-dudresnayi_contig947:20796..20964Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig947 20797..20964 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930893.276708-UTR-D-dudresnayi_contig947:20964..209711622930893.276708-UTR-D-dudresnayi_contig947:20964..20971Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig947 20965..20971 -
1690557955.4304547-UTR-D-dudresnayi_contig947:20964..209711690557955.4304547-UTR-D-dudresnayi_contig947:20964..20971Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig947 20965..20971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig947.28276.1

>prot_D-dudresnayi_contig947.28276.1 ID=prot_D-dudresnayi_contig947.28276.1|Name=mRNA_D-dudresnayi_contig947.28276.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=93bp
MNMSEQDGNDMKPDISENDNSEDVTNQNCTDLESRETPKKRRSFIEVAEE
EKKLPEIRRLQGLFESLEDELNEIQVTNVDGESLDSDKESDDG
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mRNA from alignment at D-dudresnayi_contig947:20546..20971-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig947.28276.1 ID=mRNA_D-dudresnayi_contig947.28276.1|Name=mRNA_D-dudresnayi_contig947.28276.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at D-dudresnayi_contig947:20546..20971- (Desmarestia dudresnayi DdudBR16 monoicous)
AAAACTTATGAATATGAGTGAACAAGATGGAAATGATATGAAACCAGATA
TAAGTGAGAATGACAATTCTGAGGACGTAACAAATCAAAATTGTACTGAT
TTGGAGAGCAGGGAAACTCCGAAGAAACGTCGGAGTTTTATTGAAGTTGC
AGAAGAAGAAAAGAAGCTTCCCGAGGTGAATATCTTAACAATTATATTGA
ATTTAGGATACACAATTAATTGTTTAATTGAAATTATATTTAGATAAGAC
GATTACAAGGTTTATTTGAGTCGTTAGAGGATGAGCTCAATGAAATACAG
GTAAGAATTATATATTCTTAAGAAAAGTACAAAACTATATGTATAAATAT
TTTATTCTTGTATATATTAAAGGTGACAAATGTAGACGGCGAAAGCTTAG
ATAGTGACAAAGAGAGTGACGATGGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig947:20546..20971-

>mRNA_D-dudresnayi_contig947.28276.1 ID=mRNA_D-dudresnayi_contig947.28276.1|Name=mRNA_D-dudresnayi_contig947.28276.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at D-dudresnayi_contig947:20546..20971- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAATATGAGTGAACAAGATGGAAATGATATGAAACCAGATATAAGTGA
GAATGACAATTCTGAGGACGTAACAAATCAAAATTGTACTGATTTGGAGA
GCAGGGAAACTCCGAAGAAACGTCGGAGTTTTATTGAAGTTGCAGAAGAA
GAAAAGAAGCTTCCCGAGATGAATATGAGTGAACAAGATGGAAATGATAT
GAAACCAGATATAAGTGAGAATGACAATTCTGAGGACGTAACAAATCAAA
ATTGTACTGATTTGGAGAGCAGGGAAACTCCGAAGAAACGTCGGAGTTTT
ATTGAAGTTGCAGAAGAAGAAAAGAAGCTTCCCGAGATAAGACGATTACA
AGGTTTATTTGAGTCGTTAGAGGATGAGCTCAATGAAATACAGATAAGAC
GATTACAAGGTTTATTTGAGTCGTTAGAGGATGAGCTCAATGAAATACAG
GTGACAAATGTAGACGGCGAAAGCTTAGATAGTGACAAAGAGAGTGACGA
TGGAGTGACAAATGTAGACGGCGAAAGCTTAGATAGTGACAAAGAGAGTG
ACGATGGA
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