mRNA_D-dudresnayi_contig9468.28271.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9468.28271.1
Unique NamemRNA_D-dudresnayi_contig9468.28271.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9468.28271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9468contigD-dudresnayi_contig9468:2250..9018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_005705.1
Hectar predicted targeting categoryother localisation
Exons2
Model size862
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9468.28271.1prot_D-dudresnayi_contig9468.28271.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9468 2280..2831 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.5532024-UTR-D-dudresnayi_contig9468:2249..22791622930892.5532024-UTR-D-dudresnayi_contig9468:2249..2279Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9468 2250..2279 +
1690557955.2083094-UTR-D-dudresnayi_contig9468:2249..22791690557955.2083094-UTR-D-dudresnayi_contig9468:2249..2279Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9468 2250..2279 +
1622930892.6076703-UTR-D-dudresnayi_contig9468:2831..28721622930892.6076703-UTR-D-dudresnayi_contig9468:2831..2872Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9468 2832..2872 +
1690557955.2255824-UTR-D-dudresnayi_contig9468:2831..28721690557955.2255824-UTR-D-dudresnayi_contig9468:2831..2872Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9468 2832..2872 +
1622930892.628971-UTR-D-dudresnayi_contig9468:8779..90181622930892.628971-UTR-D-dudresnayi_contig9468:8779..9018Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9468 8780..9018 +
1690557955.2358992-UTR-D-dudresnayi_contig9468:8779..90181690557955.2358992-UTR-D-dudresnayi_contig9468:8779..9018Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9468 8780..9018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.5785677-CDS-D-dudresnayi_contig9468:2279..28311622930892.5785677-CDS-D-dudresnayi_contig9468:2279..2831Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9468 2280..2831 +
1690557955.2175198-CDS-D-dudresnayi_contig9468:2279..28311690557955.2175198-CDS-D-dudresnayi_contig9468:2279..2831Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9468 2280..2831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9468.28271.1

>prot_D-dudresnayi_contig9468.28271.1 ID=prot_D-dudresnayi_contig9468.28271.1|Name=mRNA_D-dudresnayi_contig9468.28271.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=184bp
MIGVICKRCANQGCIKLSSYGIEGSTRKNAVLCAQHAKEGIVDVCHNRHA
NQGCTKQPSFGIAGRKTREFCAQHAKQDMVVETFDMTDSPATLSRKTSKK
RARRHDSPMAPDSVQSGANKRVHGQCSSVRLGSTATPDMTITEFERGNLA
VKCTTIVVEAAPSGGAIEPLTSPEAREVTVKVK*
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mRNA from alignment at D-dudresnayi_contig9468:2250..9018+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9468.28271.1 ID=mRNA_D-dudresnayi_contig9468.28271.1|Name=mRNA_D-dudresnayi_contig9468.28271.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=6769bp|location=Sequence derived from alignment at D-dudresnayi_contig9468:2250..9018+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCATTCTGCGTCCAGCACGCCAAACAGGGCATGATAGGCGTCATCTGCAA
AAGATGCGCCAACCAGGGCTGCATCAAGTTGTCGTCATACGGCATAGAAG
GCAGTACTCGTAAGAACGCAGTACTCTGCGCCCAGCACGCGAAGGAAGGC
ATAGTCGACGTCTGCCACAATAGACACGCCAACCAGGGTTGCACCAAGCA
GCCATCATTCGGCATAGCAGGCAGGAAGACACGAGAGTTCTGCGCCCAGC
ACGCCAAGCAGGACATGGTCGTTGAAACTTTTGACATGACAGACTCTCCT
GCCACACTCAGCCGGAAAACTTCCAAAAAACGAGCACGCCGGCACGACAG
CCCTATGGCTCCGGACTCAGTTCAATCAGGTGCCAATAAAAGGGTACACG
GACAATGCTCCTCTGTTCGCCTAGGCTCGACGGCCACACCAGATATGACC
ATCACGGAGTTTGAGCGTGGTAACTTGGCAGTGAAATGCACTACGATAGT
TGTTGAAGCAGCGCCTTCAGGTGGAGCAATCGAACCGCTGACCTCCCCAG
AAGCCCGAGAAGTGACGGTCAAGGTGAAATAGAGGTCGTCTCGGCAAAAT
GAGATGCTAGCCAAAGACTACAGGTATGTTATGTCAAAAACAGGATTTTG
TATCCTTCTATTAGTTAGTGCGTGATAGATTTTTTTATTCATACATGCGT
ACGCCTTGAAGCTTACGGCTACGTAGTAGTAGTCGTGATTGTTTTTGTGC
ATCTCCATAAATAAAATAAAACTTGGTGTCGCCTGTCTGTGTTGCACTAA
GGGCCGTTTTAAACATTCCAAATTTCCGTTCCATTTTCCAAATATTTGGA
ACCTGTACGCAGGCGTTCCTCCAAAGTTTTTCCAAATATTCGGAACGAAG
TCACGGCCCAAAAGTTGGCCTGAGTTGCTTCCATATTTTTGGAAACTTTT
TGGAAACTTTCCAAATGCACTTGTAGAGGCACATGAGGGCTCCGATGCCT
GAACCACGAGCGTCCCTCACCACGCAACGTACGCTAGGGTCGTGGTTGGG
GCGTGGCCGACGGTAGAGAGCACGGCGCGCCTCCACATTCGACATTTCAG
CAAGTGTTGTAGATGTGATTTTTTTGGTTTTTCGGCCTTTTCTTGCTAAC
AACTTCACCCCTCACAGCAGTCGCGTATGGAGCACCAGGGCACCAACAAG
CCCGTAGCGCCGGCACCGCCGACGGTCAGAGTCATATAGAACAGTGTTTC
GAAGGAATCAGCACCTCATGGGCCTTCAAGCTCGCGTAGTGTGTGACGCC
GTGAACCAGAGAGGGAGCGGCAACCCAAAAAAAAATCTTGCCTTCTGATC
TACGATGAAAAACTAACGGACAGCTGTGATCGTTGCGTGGGCAGCACAAG
GGCACCAACTAGCCCGTAACACCGGCATCGCCGATGGCCAGTGTCACGTT
GACCACCGTTGCGAAAGAATCAGGACGTCGGAGGCTTTTAACCTCGCGTA
GTGGGTGATGGCATGAAGCGCACCGTGTGGCGGCGTGTTCTTTTTTGGAA
ACTTCACATCTGGCTGTTTACGATGGGTTGCTGTGGTTCCAAATCAGTTG
GTTCCAAATTTGAAAACTTTGGAACGTTTGAAACGACCCTAACTACTTCG
ATAAAGTATGGATTTTAGTCACTTTTCCGTCCCCGGTCCCCGATACTCGG
AAAACCACTTGGATAAAGCATGGGTTGAAGACGCCACTGATGATTCGGGA
ACCCCGCGAAACCGTCCCCGGGGTGCCGAAACTGGGAAAAATAATTGAAT
AGAGTAGAGGGGTCGAAACGCCTTCCACGAATCGGGAACCCTGCCAACCC
GAGGACGAAAGAAGGCCATTCCCGGGCCTTAAACGCCTTCCACGATTCGG
GAAGTCCGTCAAACCCGGGGCCAGAAATACCAAATTCTATGTCAAAAACG
CCTTCCGTGATGGGGAAACCTCGCCAACTAAAAAAATACCAAACCCGGGG
ACGAAACACGATAATCCCCGGGGTCGCAATGCCTGCCACACCCTTTAGAA
TTCCGCCCAACCCGGGGACGAAGTAGGACCGGTCTCGGGTCAAAAACGCC
CTCCATGGTGGGGAAACCCCAATAAAAAGAAGAAAAAAAGCCATACCCGG
AGGCAAAACAAAACCATCCCCGGGATCGAAGCAACTTCACCACACCCGGG
GACGGAAAGGTCACATCCCCTAGTCACAAACGCAATCCATGGTGGGGAAA
CTCCGCCAACAACGAAAAACACCAATCCATTGATGTCTGTCTCGTGTCTG
TGACACTAAATAAAGTATCGGGTGGCGGTGGTGGTGATGGTGGCCGTGCT
GCATTAACTACTTGAAAAAAGTATGGTTTTTCGCCCCTAAACCGTCCCTG
AGGCCCCGAGACTCGGAAAAATACTTGAATAGTAATGATCGAGAACGTCT
TGCACGAATAGGGAACCCCGCCAACCCGGGGACGAAAAAAAGCCATCCCC
GGGTTATAAACGCCTTGTAGGATTCGATAAATCCGCCAAATCCGGGGACG
GAAAGGCCAGAACCCCGGGTCAAAAACAACCTCCTTGGTGGGGAAACCCT
GCAAACAACCAAAAGCGCCAAACCTGGGGACGAAAAAAAAGGACTATCCC
AGGAGTCGGAACGTCTGACATCACCCGGGAACTCCACCAAACACGATGAC
GGAAAGGTCACGTACCCGGGTCAAAAAAGCCTTCCATGGTGGCGAAAACC
CCAAAAAAGAAGAAAAAAAGCCAACCCGGTGACAAAACAACACCATCCCC
GGGGTCGGAACAACTCCACCAAACCAAGGACGGAGCGATCACATCCATAA
GAAACGAAATCCATGGCGGGGAAATCCCGCCAAAAACAAAAAACGCCAAT
TCTTTGATGTCTTGTCTGGTGTCTAGTAAGTCTGGTACAAACTACTTGAA
GAAATCATGGTTTTAGGTCAGTTCAGTCATTGTCGTACGAGGGATGGGTT
GGGGTTGGATATTCGGTCGGTCGGGTTGGGTTGGGTTTGGTTGGGTTGAG
GTTGCGGTTGGGTCGGTCGGTCGGTCGGCCCGGCGGCCTTCCAAGGCCAC
CGTCATCGACCGCGCTTGAATATACAGTAGTAGTAGTAGTAGTATTTATT
TCAAATACATCAGTTAGCGGAAGTTGGGGGTTCGATTCCCGGTGGCACTT
TTCTGTGCCATCATCCGTCGCGGAAAACGCGAGAGCGTGAGCAAGCACAA
TTCGATGAAAGTCGACGAGGGAAGAAAGTGCTGCACTCTTCTCTCGAGAT
AAAAATGTAGGCACGTACCGTGGTGGGAAGGAGGGAGGAGCGCCTACTAC
GTGACCCCGGATCCAAGTTGCGAAGAGAGATGGAGAAGGAATAGAGCGAA
GATTTTGAAACGGAAAAAAAAAAATCAGCCGTGACGTTCCAAACTGGTTG
TATGATACGTACCAGCCAGGAACGTACATCTTACGTGAAAAAGGTTGCAG
GTACCCCAGGGGTCGCGTAAATCCGACTCCCTGATAGGCCGAACAAAAGT
TTGTTTTCCCAGGGTCTTTGTTGTTCCCTTTGTTCTTGCCAGGCTCAAGT
TTTGTTTCACCGTGATGATGCTTTGGAATGCATGGTGAATACATTTTAAA
CCCTGAATTCTATGCTACAAATAAATGTAAACCGAGGTACAAACGACAAT
AGTTCGCCACATTCAGATAGAAAGACTCGCGTGCGGGTTGAATTTGTGTG
GTTGATTGCGGGATGAGTGCCATATACATGGCATGTCCGCACAATGTTCA
ACAGAATAGAGCATTGTCGCAGAAATGCGAAGCCGCAGTCGCTGCTGTAT
CATATATAGTACTGTAGTACAATACATAGTATAGTCACATTTATGGACCT
ATTATACTCGAAGTATATTATTACTTGTAGAGGGTTGGGGTATATAGGAT
GATCCCAAATGGCTGTGCGACCAGGATTCGACGTCTATATGGCCAGGGGA
TCATCGTCAACCTCACACTGTGTGTTACATCGTCACACGATACTATCAAT
AGATATTCTACGCTGCTACAAGGTTGCACTTATGCCATATATACCACCGA
TTCGCTGTCCTGTACGACATCGTACAAGGATGATTATCTCCATCATGAAG
ATCAGTACTACTGCTGTCCAGCACGAAATCGTACACGGTTCCACTGTCTA
CCTACGAGTAGAAAACATCTACATTTCTACTCGTACGAGGTTGCAAGTAT
GCCATATAATACCGATGACCTGTCCAGTACGAAATCATACACAGATGCAT
TTCTCCACGAAGATCAGTACGTGGTGATTTTCATCATGGAGAAACTCATC
CGTGTACGATGTCGTACTGGACAGCGAATCGGTATGATATTATGGCGTAA
TTGCAACCTTGTAGCAGTGTAGCGGTTTTCTACTGCAATGTTAATATTAT
TAGGCCATGCACTTACGATGTTTTTTTTAATGAGTTTGGTCCACGACAAG
AAATTTCGCTTTTTTCGCCAAATTCACTAACGGGATTGTTCAGGGTGGGC
TACGTAATTTAAGATCACATGGAATACATCGTTGGAAAGCTCTGGTTCAG
GCGCAACTTCCTGTTGTCGTTTTTTATTCAATTTTTTTCTGCTTGAGAGA
AAATCGTGGTTCAGAGAAAAATTGGTTATGATTTTAATTCAAAATCTGAC
CTGACGATTTACAAAAAACGTTTGGGATTTTCGTCCTGTGTCCTCAGAAC
CAGTTTGTTGTTTTGCAAACATTCCTGTGACCCAAGAAAAAGCGGAAAAA
CCTGCTTCCAGGCGAGTCTGCTGGATATGTCATTAATTCGAAATCTGACC
TGCCGATTTAAAAAAACCCTTCGGATTCGGACGAATTGGCTCCGTCCCCA
GGGCCAGTCTTTCTATTTTTTGTGAGAAAAATTCTGTAGCCCAAGAGATG
TACAATTTTCTCGCAGGCCGACGTTTTGGGCAAAAACGGAAATTCGAGAA
ATCGTCCCCTGGCGAATTTTTCAAAATCTACATGTCTATATTTTGGGCTC
ATATCAAGAACTTCAGTGCACGCGTTACGTTTTCCAATTCGATTGCGTTC
GCTCTGAGCAACTCGATGAAAAATCGCCTAAAAAGCACGTTTTGTAAAAA
TTGGACCGATACACCCAAATTCACAATACCTAACTCAGTAGAATAATTAT
CATGTAGACGTAGAAAGGTGTAAAAATGCGCGATCTTCATTTTCTCGACG
GATTTGAATTGCTTAGACGATCACGAAATGCTCTGTTTCACGTGCTAACT
CTAAACACTGAGCGGAATAAAGTGGGGGTCCAGTACTGCCGAAACTTCTG
TATTGAATGGACAAACAGGAATGTGGCGATTTTCCAGGTCGAAAATGGAA
CGTTCCCCTAATTCGGCGGTTCCCTGATGCGAAAGTGGAACGTTTCCCTG
ATGCAGCGGTTCCCTAACCCAACAGTGGAAATCGGTTCCCTAGGGCAGCG
GTTCCCTAATGAATGCACTACAACACTATTATTATTAGGCCATGCACTTA
CAATGGTTTTTGAATGGACTTGACTAAAAGTACGAGTATACCAACGGCAC
TATCCTTCCGGGCCTGACCCCGCTTGGCGCTGATAATTTGTCGGCATACC
ATGTGGTATTAAAATTCGCGCAGCGCGGCTCAGTCGCCGCAGGGCCGTCA
TACAATAAACGCAGACTTCATATATTTTTTTTTATCGTACTGTAGGTGCG
TGGCTTAGTAATAGTATTAATTTTAATAGTATAATAACAGTCTGGGTGCA
CGTTTTATTTACACCCATATGGGTATCTGGAGTTTTTTCCATCTTGAGTC
GTACTGAAATTCGGGGACAAGGTTTGCGTGATGTATTGAACCGTTTACCC
TTGGTTCCTTATTCACCATACTGCTCCACTGCTTACTCACGAACACATGT
GGTAGGAGCAAATGTATGCGTACTCTATATGGATTGGAGATGGCCGTTTT
TCGTTGGGATCAGTACTGGCATTTCTATGCAACTGTATCCATTCCTCGTG
TACTATCCCGTAGCAAACAAACGGATCCAGCCCTCAAGGTTTGCTCTGTA
CACGATGCCCGTGAGCAACGGGAACATCGTTGGGAGGGAGCTTGGTGTTA
AGGACGCGCCTCTTTTGTTGGTCTCCTTGCGTATATATTATCAGTGTTTT
GAGTGGTACGAGCGAGCGGTATGCTCGCGTTATTCTGGACCCCACGACAA
ATTGAAATAACAAGAATATTTGGTCGTCCTGCCGGCCTAGCAGTTTGAGA
CTTCATTGCCATATCGCGGTCCATGTTTGCACATTGTATCGTTTCTCGGC
CGCCATGTATACCGAAGTAGTGACATTCGTGATAGATAAACGGCCTTCCG
CACGACGTGCTCTGTTGTCATTCCCGTAATCTTCCGACGTTCTGGATTAA
TCTCGCGTCCATCCATGGCTGAGCAAAATACTTTTTCTGTCGTCCTCGAA
AACAAAATGCCATCGTTTGACCGTTTGCAGGCAAATTGTACCGGGATGAG
AGCACTAGAGCCCCTCTGGCAGATTTGGGCCGTGTCCTCCTGACGACGGT
GAACGATCTTCTGCACGTGTTTCGTTCCCGGATATTGCAAGCCGGTGTAG
TACACAACGGTGCTGAGTGTGGCGACAACAGTAGTACGGCGGAAGGAGAA
TATTCCGAGAAGGTGCATGTATGAGAAGTTAAATTGATGGTCCCGTGCAG
CAGTATGAAATGACCTGGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9468:2250..9018+

>mRNA_D-dudresnayi_contig9468.28271.1 ID=mRNA_D-dudresnayi_contig9468.28271.1|Name=mRNA_D-dudresnayi_contig9468.28271.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at D-dudresnayi_contig9468:2250..9018+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGATAGGCGTCATCTGCAAAAGATGCGCCAACCAGGGCTGCATCAAGTT
GTCGTCATACGGCATAGAAGGCAGTACTCGTAAGAACGCAGTACTCTGCG
CCCAGCACGCGAAGGAAGGCATAGTCGACGTCTGCCACAATAGACACGCC
AACCAGGGTTGCACCAAGCAGCCATCATTCGGCATAGCAGGCAGGAAGAC
ACGAGAGTTCTGCGCCCAGCACGCCAAGCAGGACATGGTCGTTGAAACTT
TTGACATGACAGACTCTCCTGCCACACTCAGCCGGAAAACTTCCAAAAAA
CGAGCACGCCGGCACGACAGCCCTATGGCTCCGGACTCAGTTCAATCAGG
TGCCAATAAAAGGGTACACGGACAATGCTCCTCTGTTCGCCTAGGCTCGA
CGGCCACACCAGATATGACCATCACGGAGTTTGAGCGTGGTAACTTGGCA
GTGAAATGCACTACGATAGTTGTTGAAGCAGCGCCTTCAGGTGGAGCAAT
CGAACCGCTGACCTCCCCAGAAGCCCGAGAAGTGACGGTCAAGGTGAAAT
AGATGATAGGCGTCATCTGCAAAAGATGCGCCAACCAGGGCTGCATCAAG
TTGTCGTCATACGGCATAGAAGGCAGTACTCGTAAGAACGCAGTACTCTG
CGCCCAGCACGCGAAGGAAGGCATAGTCGACGTCTGCCACAATAGACACG
CCAACCAGGGTTGCACCAAGCAGCCATCATTCGGCATAGCAGGCAGGAAG
ACACGAGAGTTCTGCGCCCAGCACGCCAAGCAGGACATGGTCGTTGAAAC
TTTTGACATGACAGACTCTCCTGCCACACTCAGCCGGAAAACTTCCAAAA
AACGAGCACGCCGGCACGACAGCCCTATGGCTCCGGACTCAGTTCAATCA
GGTGCCAATAAAAGGGTACACGGACAATGCTCCTCTGTTCGCCTAGGCTC
GACGGCCACACCAGATATGACCATCACGGAGTTTGAGCGTGGTAACTTGG
CAGTGAAATGCACTACGATAGTTGTTGAAGCAGCGCCTTCAGGTGGAGCA
ATCGAACCGCTGACCTCCCCAGAAGCCCGAGAAGTGACGGTCAAGGTGAA
ATAG
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