mRNA_D-dudresnayi_contig9461.28267.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9461.28267.1
Unique NamemRNA_D-dudresnayi_contig9461.28267.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9461.28267.1 vs. uniprot
Match: A0A6H5JMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.440e-15
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:    2 MVLRRLMGWHFIDMTYIILNETKKPASSWTSKNGVEIHRPHYQHLPIHIQTKIDELTAIDAVLYEGGKAAFEKTLEPVADLVEKDLVIFHQLQAVVYRYV 301
            MV+R L+GW  +DMTY+ +N     +S    K GV   R  + HLP  +Q KIDELT +D  LY+ G AAFE++L P    V+ DL  F +LQ VV  Y+
Sbjct:  333 MVMRSLLGWDLVDMTYVSVNR----SSGRKGKFGVSKERVPFDHLPEDVQEKIDELTTLDRRLYDAGVAAFEESLAPFTAQVDADLEGFRELQTVVNEYL 428
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BLAST of mRNA_D-dudresnayi_contig9461.28267.1 vs. uniprot
Match: A0A6G6CDJ0_SACJA (Sulfotransferase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A6G6CDJ0_SACJA)

HSP 1 Score: 79.0 bits (193), Expect = 1.820e-13
Identity = 42/118 (35.59%), Postives = 68/118 (57.63%), Query Frame = 2 
Query:    2 MVLRRLMGWHFIDMTYIILNETKKPASSWTSKNGVEIHRPHYQHLPIHIQTKIDELTAIDAVLYEGGKAAFEKTLEPVADLVEKDLVIFHQLQAVVYRYVLATRPN----MYTLSGLY 343
            MVLRRL+GW  IDMTY+ ++ETK       + +   + RP +  LP  ++ KID LT +D ++Y   +  ++K L P++D++  D+  F +LQ VV  Y+ A + +    MY    +Y
Sbjct:  304 MVLRRLLGWSMIDMTYMAMDETK-------AGDIAVVDRPSFHDLPEKVRNKIDSLTELDQMVYSAAQVLYDKRLRPMSDVIGADVEEFQKLQKVVSGYLDANQSSKANAMYRAEDVY 414
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BLAST of mRNA_D-dudresnayi_contig9461.28267.1 vs. uniprot
Match: A0A6H5L8E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8E6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.450e-13
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 2 
Query:    5 VLRRLMGWHFIDMTYIILNETKKPASSWTSKNGVEIHRPHYQHLPIHIQTKIDELTAIDAVLYEGGKAAFEKTLEPVADLVEKDLVIFHQLQAVVYRYV 301
            +LR L+GWH ID+TY  LN T+  A  +  K  ++  RP + HL   +Q +IDELT +D  LY+ GK  FEK L   +   + +L  F +LQ  V  Y+
Sbjct:  235 LLRSLLGWHMIDVTYASLNATRAGARRYDGKPLID--RPDFCHLSEEVQARIDELTILDQALYDAGKKEFEKRLSSTSTSFQAELAGFQELQDNVCTYL 331
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BLAST of mRNA_D-dudresnayi_contig9461.28267.1 vs. uniprot
Match: D8LRU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU8_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 3.770e-12
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 2 
Query:    2 MVLRRLMGWHFIDMTYIILNETKKPASSWTSKNGVEIHRPHYQHLPIHIQTKIDELTAIDAVLYEGGKAAFEKTLEPVAD-LVEKDLVIFHQLQAVVYRYVL---ATRPN-MYTLSGLY 343
            MVLRRL+ W  +DMTY+ + +T   A  +  K  V    P ++ LP+ +Q  ID+ T +D VLY   K  +EK  + +   L+E+DLV FH+LQ  V  Y++    ++ N MY  + +Y
Sbjct:  280 MVLRRLLRWEMVDMTYVSVYKTTAGARRYDGKPLVNA--PRFEDLPVQVQQIIDQHTELDRVLYNAAKLEYEKRRDLIPPPLLEEDLVEFHELQRTVGAYLVDNPTSKANAMYKTANIY 396
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BLAST of mRNA_D-dudresnayi_contig9461.28267.1 vs. uniprot
Match: D7FI84_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI84_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.480e-11
Identity = 36/100 (36.00%), Postives = 56/100 (56.00%), Query Frame = 2 
Query:    2 MVLRRLMGWHFIDMTYIILNETKKPASSWTSKNGVEIHRPHYQHLPIHIQTKIDELTAIDAVLYEGGKAAFEKTLEPVADLVEKDLVIFHQLQAVVYRYV 301
            M++RR++GW  IDMTY  + ETK   + W  K    +  PH++ LP  +Q ++D  TA+D +LY+   + + K     A  +E DL  F +LQ  V  Y+
Sbjct:  217 MMMRRILGWEMIDMTYSRMMETKAGGARWDGKELKNV--PHWEDLPTWVQDRVDANTALDKMLYDAAVSHYNKMKAVAAMEIEDDLKEFDELQKTVNGYL 314
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BLAST of mRNA_D-dudresnayi_contig9461.28267.1 vs. uniprot
Match: A0A6H5JL02_9PHAE (ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL02_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.870e-10
Identity = 35/100 (35.00%), Postives = 55/100 (55.00%), Query Frame = 2 
Query:    2 MVLRRLMGWHFIDMTYIILNETKKPASSWTSKNGVEIHRPHYQHLPIHIQTKIDELTAIDAVLYEGGKAAFEKTLEPVADLVEKDLVIFHQLQAVVYRYV 301
            M++RR++GW  IDMTY  + ETK   + W  K    +  P ++ LP  +Q ++D  TA+D +LY+     + +     A  +E DL  F +LQ VV  Y+
Sbjct:  406 MMMRRILGWEMIDMTYSRMMETKAGGTRWDGKELKNV--PRWEDLPTWVQDRVDANTALDKMLYDAAVRHYNQMKAVAAIEIEDDLKQFEELQKVVNGYL 503
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9461.28267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JMW5_9PHAE1.440e-1545.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G6CDJ0_SACJA1.820e-1335.59Sulfotransferase n=1 Tax=Saccharina japonica TaxID... [more]
A0A6H5L8E6_9PHAE3.450e-1340.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRU8_ECTSI3.770e-1236.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FI84_ECTSI2.480e-1136.00Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5JL02_9PHAE5.870e-1035.00ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9461contigD-dudresnayi_contig9461:8231..10744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue3.4e-11
Seed eggNOG ortholog2880.D7G4H5
Preferred nameGAL3ST3
KEGG rclassRC00007,RC00231
KEGG koko:K01019,ko:K09676
KEGG ReactionR04017,R05105,R10805
KEGG Pathwayko00565,ko00600,ko01100,map00565,map00600,map01100
KEGG ModuleM00067
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005975,GO:0005976,GO:0005996,GO:0006022,GO:0006029,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009311,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016782,GO:0017076,GO:0019538,GO:0030166,GO:0030246,GO:0030309,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044425,GO:0050656,GO:0050694,GO:0050698,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681
EggNOG free text desc.galactosylceramide sulfotransferase activity
EggNOG OGs2CM97@1,2QPNT@2759
EC2.8.2.11
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons4
Model size678
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9461.28267.1prot_D-dudresnayi_contig9461.28267.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9461 8232..10445 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.6474807-UTR-D-dudresnayi_contig9461:8230..82311622930891.6474807-UTR-D-dudresnayi_contig9461:8230..8231Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9461 8231..8231 +
1690557954.949988-UTR-D-dudresnayi_contig9461:8230..82311690557954.949988-UTR-D-dudresnayi_contig9461:8230..8231Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9461 8231..8231 +
1622930891.9661822-UTR-D-dudresnayi_contig9461:10445..107441622930891.9661822-UTR-D-dudresnayi_contig9461:10445..10744Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9461 10446..10744 +
1690557955.0190177-UTR-D-dudresnayi_contig9461:10445..107441690557955.0190177-UTR-D-dudresnayi_contig9461:10445..10744Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9461 10446..10744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.893752-CDS-D-dudresnayi_contig9461:8231..83751622930891.893752-CDS-D-dudresnayi_contig9461:8231..8375Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9461 8232..8375 +
1690557954.9768515-CDS-D-dudresnayi_contig9461:8231..83751690557954.9768515-CDS-D-dudresnayi_contig9461:8231..8375Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9461 8232..8375 +
1622930891.9089587-CDS-D-dudresnayi_contig9461:8883..89581622930891.9089587-CDS-D-dudresnayi_contig9461:8883..8958Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9461 8884..8958 +
1690557954.9881315-CDS-D-dudresnayi_contig9461:8883..89581690557954.9881315-CDS-D-dudresnayi_contig9461:8883..8958Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9461 8884..8958 +
1622930891.9243453-CDS-D-dudresnayi_contig9461:9753..98541622930891.9243453-CDS-D-dudresnayi_contig9461:9753..9854Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9461 9754..9854 +
1690557954.998616-CDS-D-dudresnayi_contig9461:9753..98541690557954.998616-CDS-D-dudresnayi_contig9461:9753..9854Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9461 9754..9854 +
1622930891.9418206-CDS-D-dudresnayi_contig9461:10387..104451622930891.9418206-CDS-D-dudresnayi_contig9461:10387..10445Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9461 10388..10445 +
1690557955.008929-CDS-D-dudresnayi_contig9461:10387..104451690557955.008929-CDS-D-dudresnayi_contig9461:10387..10445Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9461 10388..10445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9461.28267.1

>prot_D-dudresnayi_contig9461.28267.1 ID=prot_D-dudresnayi_contig9461.28267.1|Name=mRNA_D-dudresnayi_contig9461.28267.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=126bp
MVLRRLMGWHFIDMTYIILNETKKPASSWTSKNGVEIHRPHYQHLPIHIQ
TKIDELTAIDAVLYEGGKAAFEKTLEPVADLVEKDLVIFHQLQAVVYRYV
LATRPNMYTLSGLYHTPLPDGGVPF*
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mRNA from alignment at D-dudresnayi_contig9461:8231..10744+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9461.28267.1 ID=mRNA_D-dudresnayi_contig9461.28267.1|Name=mRNA_D-dudresnayi_contig9461.28267.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2514bp|location=Sequence derived from alignment at D-dudresnayi_contig9461:8231..10744+ (Desmarestia dudresnayi DdudBR16 monoicous)
GATGGTTCTTCGTCGTCTCATGGGTTGGCATTTCATTGATATGACCTACA
TTATTCTCAATGAAACTAAAAAGCCTGCGTCATCGTGGACATCAAAAAAT
GGCGTCGAAATTCACCGACCCCATTACCAACATCTTCCGATACATGTAAG
ACGCAACAATGGCCATCTAATCTTGGGGAGTTTGTAGACTATCACATATA
ATCAGCCACGCTTCTCCATTGAATAAATGGTAATTTATCATCGCGGAAAG
ACACTGTCGCCCGTGTTGACGGAAGGTTTGGGTTGAAATCCCCGGAAAGA
CACGTTTACGTGCCGCGTTCCACGTCGGCAAACGCGAGAGCGTAAGTAAG
AGAAGATAGACAAGAGGCAACGAGCTGTGAGCGTGACGAATCCCGTAAAC
AGGAACAAGCCGCGGCAAGTACCGGCGGGAAAGAAAGGGCGACACCTGTG
ACGACGGCTCGCTCAGAAAATCCCTGAAAAATAATTGCTGCGAATTGAGG
TTTGAAGCTAAAGCAACCGATGAAGTCACAAGGGCAAATATTTGCCAGTT
CCGCTGCTTGTGTCACGCTGGCGAACACACAATGCATGATGCCGCAGTTT
TTTTATCGACGTGCATGTGACCCGTTACTATCGATGTCGTCCGGGACGCT
CAGATTCAGACCAAGATCGATGAGCTTACGGCCATTGATGCAGTGCTCTA
CGAGGGAGGAAAAGCTGCTTTCGAGAAGGTATCGATAGGTAGAAAATATT
TGCTCTTTTAGTTGCAACTGGCGCCTTTAGCGGCTAAACACTCTGCAACT
TGGGATGCGTACCACTTCCAGAATAGTCTCACGGAGAGTAAAAACCGTTA
GGTAGTAGGTGTAGGCTGGGCCTGGCTGTGTTTGACTTCCGCGAACCCTG
TAATTCTTCGCCACATGGGATTTGTGGGGGAACATGAAAGACCACGTATT
AAACTTGGAGCAACTGTGACTTCAGTCCGTGGGGTGTGTTGATAAACGGA
TTGTACTTCCTCGCGAGAGGTTTCGTCCACCAAATCGGTGTCACGAGAGA
ACAACGCTTACAGTAGTTTGCCGGATATCGAGCCGCAAAGACGGAGGAGT
GCCACCGATAAAATACCCCAGAGTATGGTTTAAATGTATTTCACCGCATA
CAATGCAATAGTTGCCGTGGTACCGTTTATACGGTGTTCGACAATGATAC
TTACGATGCGGGCTGGCACTCGTATTCAACCCATATGGTGAGTACAAGTG
CGTTAGGATAACCTCCGTAATGCAGCCACCAAACCCTAGTACCGTATGTT
GCGGTCTTCAGCGGTAAGTGTGTGAATGTTGTGTTGTTGCGGTCTTCAGC
AGAAAGTGTGTGAATGTATCGTTCGGAAGGATTTGTTCGGAAGCATTTGC
ACGATGAACCACTACCTTCATACGAAGTAGGACGCGATTATTGCGCACCT
GTCGGGGTCTTTTGAAGCTGCCGATATATCACTTTTGAGCGGTCCTCCGA
ATCACTAATACGTACGTTGGCAGACCCTGGAACCGGTAGCAGACCTTGTG
GAGAAAGACCTGGTGATCTTCCATCAGCTGCAAGCGGTTGTGTATCGATA
CGTCCTTGCCACAAGACCGAATATGTAAGATTTGCTGATTTTCCTATAGT
CATTTGCTTCGAATTGCCAGGTGTTTGTTTGATTTATCGTAATGAGTCTA
AAAATATGCCCAGCGAAGCACGGCATTTTTTTTGCCGGCATGTTTGGACG
GGAAAAGAAAGCCTCTCCCTAGTGGCCGGACGTGCACGATCAGACGCACA
TGGAAATAGCAACACCGAATTTTGCCACAGCCGACCCAAAACTGTAAAAA
TACTAGTCTGGCATCAAGGTTCACCACTTCGATGAAGGCACACCACGTGA
CTAAATGATATTGTAGGGGACGTTTTCGCAATGTTCGTGTTAGGGAAGAA
TTGTGTGTGGGAAGAACTTTGCGTTGGGACATGAATCCAGATGTTGTGCT
TTTCGAAGGTGCCGCACATCGAGGCGTAGAAGAATGAGCGTATATAGTGG
AGGAATTCGGTACTATGTCGGACAAATATTTATCACGCCGCACATGCATG
TCTAAGGTTAGGGTTAGTCGACATTTTTCCCGCCGTCGCTACCCAAAATG
CCAACAGGTACACTCTTTCGGGCTTATATCATACACCACTACCCGACGGT
GGAGTTCCGTTTTGAGGACATTTTGGTTCGATCAAGTGCGCAACACGAAC
GATCTCCTCAACACGGAAATAAGCAATGCATATCATGACGTGGTACTGGC
AAAACCGAGGGGAAACAGCACCGGCACAAGATTAGAATAGATCCAATCTT
GTGCCTTCAGTGCAGTTGTCTCGTTATTGGTTGTCGACGGGTGCCAGTGG
CGGAGTGAATGCTTGCGGTCGGGTACCTACTGGCAGGCACACGAGACGAA
GACAAGAACGAGGATAACTCGTGGTTATGCACTCACGAAATGGCTGGAAC
ATGGCTGGAAAGAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9461:8231..10744+

>mRNA_D-dudresnayi_contig9461.28267.1 ID=mRNA_D-dudresnayi_contig9461.28267.1|Name=mRNA_D-dudresnayi_contig9461.28267.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at D-dudresnayi_contig9461:8231..10744+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTTCTTCGTCGTCTCATGGGTTGGCATTTCATTGATATGACCTACAT
TATTCTCAATGAAACTAAAAAGCCTGCGTCATCGTGGACATCAAAAAATG
GCGTCGAAATTCACCGACCCCATTACCAACATCTTCCGATACATATGGTT
CTTCGTCGTCTCATGGGTTGGCATTTCATTGATATGACCTACATTATTCT
CAATGAAACTAAAAAGCCTGCGTCATCGTGGACATCAAAAAATGGCGTCG
AAATTCACCGACCCCATTACCAACATCTTCCGATACATATTCAGACCAAG
ATCGATGAGCTTACGGCCATTGATGCAGTGCTCTACGAGGGAGGAAAAGC
TGCTTTCGAGAAGATTCAGACCAAGATCGATGAGCTTACGGCCATTGATG
CAGTGCTCTACGAGGGAGGAAAAGCTGCTTTCGAGAAGACCCTGGAACCG
GTAGCAGACCTTGTGGAGAAAGACCTGGTGATCTTCCATCAGCTGCAAGC
GGTTGTGTATCGATACGTCCTTGCCACAAGACCGAATATACCCTGGAACC
GGTAGCAGACCTTGTGGAGAAAGACCTGGTGATCTTCCATCAGCTGCAAG
CGGTTGTGTATCGATACGTCCTTGCCACAAGACCGAATATGTACACTCTT
TCGGGCTTATATCATACACCACTACCCGACGGTGGAGTTCCGTTTTGAGT
ACACTCTTTCGGGCTTATATCATACACCACTACCCGACGGTGGAGTTCCG
TTTTGA
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