mRNA_D-dudresnayi_contig9454.28262.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9454.28262.1
Unique NamemRNA_D-dudresnayi_contig9454.28262.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9454.28262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9454contigD-dudresnayi_contig9454:1106..1282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionTaurine dioxygenase TauD-like superfamily domain protein
Ec32 orthologEc-06_002320.1
Exons1
Model size177
Cds size171
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.0366275-CDS-D-dudresnayi_contig9454:1105..12761622930891.0366275-CDS-D-dudresnayi_contig9454:1105..1276Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9454 1106..1276 -
1690557954.7306361-CDS-D-dudresnayi_contig9454:1105..12761690557954.7306361-CDS-D-dudresnayi_contig9454:1105..1276Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9454 1106..1276 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.0890431-UTR-D-dudresnayi_contig9454:1276..12821622930891.0890431-UTR-D-dudresnayi_contig9454:1276..1282Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9454 1277..1282 -
1690557954.7497623-UTR-D-dudresnayi_contig9454:1276..12821690557954.7497623-UTR-D-dudresnayi_contig9454:1276..1282Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9454 1277..1282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9454.28262.1prot_D-dudresnayi_contig9454.28262.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9454 1106..1276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9454.28262.1

>prot_D-dudresnayi_contig9454.28262.1 ID=prot_D-dudresnayi_contig9454.28262.1|Name=mRNA_D-dudresnayi_contig9454.28262.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=57bp
MSGNESSARLLQGCYVNIDDTMSHLRSLHADEPPSGDPVKDQLTRAGNGS
LELFRY*
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mRNA from alignment at D-dudresnayi_contig9454:1106..1282-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9454.28262.1 ID=mRNA_D-dudresnayi_contig9454.28262.1|Name=mRNA_D-dudresnayi_contig9454.28262.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at D-dudresnayi_contig9454:1106..1282- (Desmarestia dudresnayi DdudBR16 monoicous)
CAGGCGATGTCGGGTAACGAGTCCAGCGCTCGACTGTTGCAAGGTTGTTA
TGTGAACATCGATGACACGATGAGCCATCTGCGAAGCCTCCACGCGGATG
AGCCGCCGTCCGGCGATCCTGTGAAAGACCAGTTAACGCGCGCCGGCAAC
GGGTCTCTTGAGCTATTTCGGTACTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9454:1106..1282-

>mRNA_D-dudresnayi_contig9454.28262.1 ID=mRNA_D-dudresnayi_contig9454.28262.1|Name=mRNA_D-dudresnayi_contig9454.28262.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at D-dudresnayi_contig9454:1106..1282- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCGGGTAACGAGTCCAGCGCTCGACTGTTGCAAGGTTGTTATGTGAA
CATCGATGACACGATGAGCCATCTGCGAAGCCTCCACGCGGATGAGCCGC
CGTCCGGCGATCCTGTGAAAGACCAGTTAACGCGCGCCGGCAACGGGTCT
CTTGAGCTATTTCGGTACTGAATGTCGGGTAACGAGTCCAGCGCTCGACT
GTTGCAAGGTTGTTATGTGAACATCGATGACACGATGAGCCATCTGCGAA
GCCTCCACGCGGATGAGCCGCCGTCCGGCGATCCTGTGAAAGACCAGTTA
ACGCGCGCCGGCAACGGGTCTCTTGAGCTATTTCGGTACTGA
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