mRNA_D-dudresnayi_contig9443.28245.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9443.28245.1
Unique NamemRNA_D-dudresnayi_contig9443.28245.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9443.28245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9443contigD-dudresnayi_contig9443:1504..2562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930889.1070826-CDS-D-dudresnayi_contig9443:1503..15881622930889.1070826-CDS-D-dudresnayi_contig9443:1503..1588Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9443 1504..1588 +
1690557953.9871387-CDS-D-dudresnayi_contig9443:1503..15881690557953.9871387-CDS-D-dudresnayi_contig9443:1503..1588Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9443 1504..1588 +
1622930889.1246107-CDS-D-dudresnayi_contig9443:2338..25621622930889.1246107-CDS-D-dudresnayi_contig9443:2338..2562Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9443 2339..2562 +
1690557954.003284-CDS-D-dudresnayi_contig9443:2338..25621690557954.003284-CDS-D-dudresnayi_contig9443:2338..2562Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9443 2339..2562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9443.28245.1prot_D-dudresnayi_contig9443.28245.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9443 1504..2562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9443.28245.1

>prot_D-dudresnayi_contig9443.28245.1 ID=prot_D-dudresnayi_contig9443.28245.1|Name=mRNA_D-dudresnayi_contig9443.28245.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=103bp
VSADKLFPRRPLPSWEQGHSSPRSIAQQDQSMSPIVRCAATTLLLCQHAG
AFVSLPTCARRSGHVVVPPTNSCSRRRNECDQRYHLLAPRGATATGDLGG
GSG
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mRNA from alignment at D-dudresnayi_contig9443:1504..2562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9443.28245.1 ID=mRNA_D-dudresnayi_contig9443.28245.1|Name=mRNA_D-dudresnayi_contig9443.28245.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1059bp|location=Sequence derived from alignment at D-dudresnayi_contig9443:1504..2562+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTGTCAGCGGACAAGCTCTTTCCTCGTAGACCCCTTCCATCTTGGGAACA
GGGGCACTCAAGCCCGAGGTCGATTGCACAGCAAGGTAGGTCATTTGGGC
ATCGTGACTAGTACCTCGTCAATATCACATGCACAAAATCTCCGCCCTGA
TTCATCTAACATGCGACGTCTCCTGAACTGTCATATAGTGTTCTCAGTAC
TCGTAAGTGAGCACATGCGACAATAAAATCGACATGGGAGACTACTATCA
TATATTGAGCTACGGCGGGTGTCACATGAGCACATGAGTATACTGCGAGT
CAATGGTGGCCCTTTTATCCATGTGTTTAGCATACGGTATGTAGCTCGCC
GTACTTGATGTAGGCGCTGGGCAAGCACGTCTTGCTTTCTGCACACGGAA
CACCGCAAGTCCCTTGTTCCACATGACATACTGAATGAAGTATATATTTT
ATGTACAAGTACTACGAGTACAACAGTTCAGTAGTACTGTAGTAATAGTA
AACATACGAGTGCAACATACAAGATCGATTGGGTGCACCGTTACATCAGT
CGGCGTTATGTGTTGTTTATGGTGCTAGCACGTCAAGTCATGATCGAGCG
GCATCTTGTATCGCCCCACGTGACAACCTGCGTGGCAAGGTTGTACGAGT
ACGGCTGTTGCTGCTGTTGCTATCGTAGGGCCGTTAGGATACCTGGTGCT
CACAGTTTGAAGTTTGAAGTGCTCGTTGATCAACGCCCAACGCTACCATC
CGCCCTCTGTCTTGTCGCCCGTATTTTGCCCCTTCATCCTTTTGTCCTGC
CATACCCGTATCGTACCCGTATGTATATGTGATAGATCAATCAATGTCGC
CGATCGTCCGCTGCGCGGCTACGACGCTTCTTCTCTGCCAACACGCGGGC
GCGTTCGTTTCGTTACCGACGTGCGCAAGACGAAGTGGCCATGTAGTAGT
ACCACCTACAAACTCATGCTCGAGAAGACGAAACGAATGTGACCAACGCT
ACCACCTGCTAGCCCCGAGGGGTGCTACTGCTACGGGGGACCTAGGGGGT
GGGTCGGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9443:1504..2562+

>mRNA_D-dudresnayi_contig9443.28245.1 ID=mRNA_D-dudresnayi_contig9443.28245.1|Name=mRNA_D-dudresnayi_contig9443.28245.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at D-dudresnayi_contig9443:1504..2562+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTGTCAGCGGACAAGCTCTTTCCTCGTAGACCCCTTCCATCTTGGGAACA
GGGGCACTCAAGCCCGAGGTCGATTGCACAGCAAGGTGTCAGCGGACAAG
CTCTTTCCTCGTAGACCCCTTCCATCTTGGGAACAGGGGCACTCAAGCCC
GAGGTCGATTGCACAGCAAGATCAATCAATGTCGCCGATCGTCCGCTGCG
CGGCTACGACGCTTCTTCTCTGCCAACACGCGGGCGCGTTCGTTTCGTTA
CCGACGTGCGCAAGACGAAGTGGCCATGTAGTAGTACCACCTACAAACTC
ATGCTCGAGAAGACGAAACGAATGTGACCAACGCTACCACCTGCTAGCCC
CGAGGGGTGCTACTGCTACGGGGGACCTAGGGGGTGGGTCGGGGATCAAT
CAATGTCGCCGATCGTCCGCTGCGCGGCTACGACGCTTCTTCTCTGCCAA
CACGCGGGCGCGTTCGTTTCGTTACCGACGTGCGCAAGACGAAGTGGCCA
TGTAGTAGTACCACCTACAAACTCATGCTCGAGAAGACGAAACGAATGTG
ACCAACGCTACCACCTGCTAGCCCCGAGGGGTGCTACTGCTACGGGGGAC
CTAGGGGGTGGGTCGGGG
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