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Homology
BLAST of mRNA_D-dudresnayi_contig9425.28229.1 vs. uniprot
Match: D7FZS9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZS9_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 2.870e-20 Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 1
Query: 154 MLRRGVMKFIDREPVAAISVLIGTVGFSLPLVVPPIREAMGYTTKQSNPTAELPKPRLTAGAS 342
MLRRG++KF+DREPVAA+S+ +G GFSLP +VPPIR+++G TKQS+PT ELPKPR+ G +
Sbjct: 1 MLRRGLLKFVDREPVAAVSLGLGFFGFSLPFIVPPIRQSLGLCTKQSSPTCELPKPRMAPGVA 63
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-21_003030.1 |
| Exons | 3 |
| Model size | 540 |
| Cds size | 195 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930887.0484452-CDS-D-dudresnayi_contig9425:2013..2151 | 1622930887.0484452-CDS-D-dudresnayi_contig9425:2013..2151 | Desmarestia dudresnayi DdudBR16 monoicous | CDS | D-dudresnayi_contig9425 2014..2151 + |
| 1690557953.2766032-CDS-D-dudresnayi_contig9425:2013..2151 | 1690557953.2766032-CDS-D-dudresnayi_contig9425:2013..2151 | Desmarestia dudresnayi DdudBR16 monoicous | CDS | D-dudresnayi_contig9425 2014..2151 + |
| 1622930887.0683773-CDS-D-dudresnayi_contig9425:3931..3988 | 1622930887.0683773-CDS-D-dudresnayi_contig9425:3931..3988 | Desmarestia dudresnayi DdudBR16 monoicous | CDS | D-dudresnayi_contig9425 3932..3988 + |
| 1690557953.287594-CDS-D-dudresnayi_contig9425:3931..3988 | 1690557953.287594-CDS-D-dudresnayi_contig9425:3931..3988 | Desmarestia dudresnayi DdudBR16 monoicous | CDS | D-dudresnayi_contig9425 3932..3988 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig9425.28229.1 >prot_D-dudresnayi_contig9425.28229.1 ID=prot_D-dudresnayi_contig9425.28229.1|Name=mRNA_D-dudresnayi_contig9425.28229.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=65bp
MLRRGVMKFIDREPVAAISVLIGTVGFSLPLVVPPIREAMGYTTKQSNPT
AELPKPRLTAGASN* back to topmRNA from alignment at D-dudresnayi_contig9425:1232..4180+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig9425.28229.1 ID=mRNA_D-dudresnayi_contig9425.28229.1|Name=mRNA_D-dudresnayi_contig9425.28229.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2949bp|location=Sequence derived from alignment at D-dudresnayi_contig9425:1232..4180+ (Desmarestia dudresnayi DdudBR16 monoicous)
AGGAAAGGAAATGAAGCAGATCACACGCCGAAGACAATCAAAGGGTGGCT
TGGCAAGGTGAGTGCAGCAGTGGTGATACATCAAGTGCGTCTTCCGCACG
AGTAGTTGCTCCTGTTGGTAGATATGTGTTTAGACCGCCTTTTTGCTGAG
GCTTCGATGCGGCTCCGTGTGATAGAAGTACTTCTACAGCACAGTAGTAG
TAGTACTGACTGTTGTTGTGTATGACATGGATAGTTTGATGTAGTAGGGT
ACCTACCTCCTTGGCTGCTCTAACGCCCACGAAGAACAACGAGATCGTCG
GCATGCAATCATTCCTGGAGATATCGGGCGTGACCTGTGACCTTGTCTAG
ATTCTCAAGTGGGCATTCTCTGTTGCTGCGGCAAAGCTCGCTAACATCAT
ACGAAGTACCTGGTGTTTCGTGATGACAACGAATGGCTAATACTCGTACT
GGCGCTGTTGTGTGTTCAAGTACGGTACTGACTGGCTGTATGCTGCGCAT
TGTTGTTGCCAGTACTATCGGTACTATATACTACAGTCTGTACCCGCATC
GATACTGCTGCGTGCCTGCCTTACACTAATCTAGAAGAGTCAGAGTTGGA
ACTGCTGCATCACACGAAGTAGTATGTTGGCCAGACTTGCACGCAACCCT
GCTTTAATTGTATCGTATAAACAACTTACAACACAGGAGGAAGAAAGCGT
TCCGCGGCGTGCAACGGACTAGCTGCTTGGGGCGGAGGTTGGTATTAGTA
ACAAGGAGGACAGAAACGGACACAAAAGCAGCATGTTGAGAAGGGGTGTT
ATGAAGTTCATCGACAGGGAGCCGGTGGCGGCCATTTCGGTTTTGATCGG
CACTGTCGGTTTCTCCTTGCCTCTCGTCGTCCCTCCCATCAGAGAGGCCA
TGGGCTACACCACGAAGCAGGTGTGTTTTAGCCCTACTAACCTTGCCTTG
GGTTGGGTTGGGTTGGGTTGGGTTGGGTTGGGTTGGGGTAGGATTTAACT
CACCCTTCGAGCGCAGATTGCACGGGCAACGCCGTGGTGCCTACTGTTGT
TGCGTACTACTATCGATAGTACTACTACTACTTGTAGTGTGGTATTATAC
TACTACTCTACTACTGTACCTTGTGCTTCTGCACTACCCACCTCTTGCGA
GCTGGGTTTAGGCTTTGGCATTTCGTCCTGCGGGTTGGGTTGGGTTGGAG
TTGGGTTGGGTTGGGTTGGGTTAGGATTCCACTCACCCTTCGGGCGCACA
TTGCACGGGCAACGCCGTGGTGCCTACTGTTGTTTTAATAATATATTCTC
GTAGCGTTTTACTATGATATTTATATAGATATCGTATTATTATTTTAATT
ATCATTTATTATTTTCCGTCACATTAGCCCGATCGCGCGGACCCGTGGTC
ACAAAGGTAGGCACCTTTTTTTTTACCGAATAAAACCGACCCCACGTATA
TATATATATATATCTCTCTCTCTAGAGCATAGAGATGATCGATTGCTTCA
TTAGAAAGTACAACAATACATACTCGTACTGCGACAGGCAACAGTAGTAC
AACATTGCAACAGTGTTATAGTACCCCGCCTGATTGGACGATAGCAGATT
ACCGTGTTACCGCACAGTCATACTTCGTATGTGTTTTTTTGTAGGCCGGC
AGAGTGTCCTCCACTGCCATGTTGGCTTGCTGAAGGTGAAGTGGCCGAGC
TAACCTGGGGGGGGGGGGGGAGTTCCTCACGAAAGACGTCTTGACCCGTG
TGCTCCGCCTGTGATGGTCGCCTCCATCGTCACAATGATATAGCACATGG
ATACTCAGTAGTCTATCATACCTGACCTGGTACAGCGCCCTTTGGTAGTC
CTGACAAGCGGCATTGTTGTCTGCGTTAGCCGCTGGCTGTTTACGTTTTT
ACAATGACCCTGTTGTACCCGAACTCTATACGACATACTCTATGCTGTAT
ATACCGGCAAGGGCGCTTCGACGCTGCCTACTTTATTTGTTTATTTGTTT
GTTGTCTGTCGTCCGGCGGGTGGGTATTATGAAGATCCACAAATTTCCGC
GGGTTTTGTAGCCTTGTCGTGATCAACCATTGCTGATTTAACATCGACCA
TTGTATTATAGAACACAACTGGTTGATTGCCATTACAGGCCGTTCGTTGG
TCTCAGAGATTGCCACCCGAAGAGGTACCTATCGATAGGTCCGTGGCTCC
GTGTGGCGATCCACTTTGTAAACGCGCGTGGAGATTACTTGATCGATTAC
AATTGATGACCGATCGGTGGGGTTTGCTGCCATGTAGACCACCACTATCA
ACGTGTCTTGCCTGGGTATAGAGCCTATATACAGCGTGTGAAAAACAGTC
AACATTCTTTCTGGTCCAGAATCGAGTACTTTAGGCCAGACATTCTGGTT
TTAGCGGGGCTTTAGGCCAACGTTTGTAGGGTTGCGTCTTGGTCATAAAG
GTCGCTGATGAATTACTTAGACGTGGATGCACTAAAACACTAAAACAATT
AGTCTCGTTAGAGCTATCATATGACATACACGTTACAAGCTTCAACTAGG
ATGCGAGGTGACTGTTAGGGGTAATGGCTAGCGGTATTGGTCAGCGGTCA
GGGACAACGGCGTGCGTTATGACGACTGCCCCCACACGCAACCCCCCGTA
TTTTGTATTTTCCGTCTGCTTCCCCCCCCTTTCGGACCTCGACATCGCAG
AGCAACCCGACAGCCGAGCTGCCCAAGCCAAGACTTACGGCTGGAGCTTC
TAACTAACCTCTGTTACAGTACTGTACCGTACTATTCCGGGCCACCCTGG
AAGATTGAAGACTGCAGGGGGCGGCTTGCAATAGGCGTAAACGTCCGCGT
GGGGCATTGCCGCCATTACTGTATCTGGAGACAGTTGTAGGGGCTATAGC
TACGAGTGGAGTAGGCGATAGCATAGGTCACTGCGAGGCTGGGGGGGGG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig9425:1232..4180+ >mRNA_D-dudresnayi_contig9425.28229.1 ID=mRNA_D-dudresnayi_contig9425.28229.1|Name=mRNA_D-dudresnayi_contig9425.28229.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at D-dudresnayi_contig9425:1232..4180+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTGAGAAGGGGTGTTATGAAGTTCATCGACAGGGAGCCGGTGGCGGC
CATTTCGGTTTTGATCGGCACTGTCGGTTTCTCCTTGCCTCTCGTCGTCC
CTCCCATCAGAGAGGCCATGGGCTACACCACGAAGCAGATGTTGAGAAGG
GGTGTTATGAAGTTCATCGACAGGGAGCCGGTGGCGGCCATTTCGGTTTT
GATCGGCACTGTCGGTTTCTCCTTGCCTCTCGTCGTCCCTCCCATCAGAG
AGGCCATGGGCTACACCACGAAGCAGAGCAACCCGACAGCCGAGCTGCCC
AAGCCAAGACTTACGGCTGGAGCTTCTAACTAAAGCAACCCGACAGCCGA
GCTGCCCAAGCCAAGACTTACGGCTGGAGCTTCTAACTAA back to top
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