mRNA_D-dudresnayi_contig9375.28171.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9375.28171.1
Unique NamemRNA_D-dudresnayi_contig9375.28171.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9375.28171.1 vs. uniprot
Match: D7FHV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV7_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 3.940e-34
Identity = 63/96 (65.62%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    1 VVLAEHTNFSDSALFSPRISRSLGMVGKIDPITFIDQITRLELCALEVFLRRRTESGDADKTSPPSELSTVLLGSDLAEAFPEARVERVSAGGVLP 288
            +V A HTNFSDS LF+P   R L   G ID + FIDQ+TRL LCALE+FLRRRT SGDA KT  P +L +V+LG DLA AFPEARV+RV AGGV+P
Sbjct:    1 MVCAGHTNFSDSPLFAPGPLRKLQGAGDIDCVIFIDQVTRLALCALEIFLRRRTSSGDAAKTPAPGDLGSVVLGEDLAVAFPEARVKRVCAGGVMP 96
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9375.28171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHV7_ECTSI3.940e-3465.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9375contigD-dudresnayi_contig9375:5627..7221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_000590.1
Hectar predicted targeting categoryother localisation
Exons2
Model size504
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9375.28171.1prot_D-dudresnayi_contig9375.28171.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9375 5699..7023 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.6458533-UTR-D-dudresnayi_contig9375:5626..56981622930878.6458533-UTR-D-dudresnayi_contig9375:5626..5698Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9375 5627..5698 +
1690557950.1146963-UTR-D-dudresnayi_contig9375:5626..56981690557950.1146963-UTR-D-dudresnayi_contig9375:5626..5698Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9375 5627..5698 +
1622930878.7003405-UTR-D-dudresnayi_contig9375:7023..72211622930878.7003405-UTR-D-dudresnayi_contig9375:7023..7221Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9375 7024..7221 +
1690557950.1518524-UTR-D-dudresnayi_contig9375:7023..72211690557950.1518524-UTR-D-dudresnayi_contig9375:7023..7221Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9375 7024..7221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.6609201-CDS-D-dudresnayi_contig9375:5698..57371622930878.6609201-CDS-D-dudresnayi_contig9375:5698..5737Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9375 5699..5737 +
1690557950.1267357-CDS-D-dudresnayi_contig9375:5698..57371690557950.1267357-CDS-D-dudresnayi_contig9375:5698..5737Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9375 5699..5737 +
1622930878.6828742-CDS-D-dudresnayi_contig9375:6828..70231622930878.6828742-CDS-D-dudresnayi_contig9375:6828..7023Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9375 6829..7023 +
1690557950.13983-CDS-D-dudresnayi_contig9375:6828..70231690557950.13983-CDS-D-dudresnayi_contig9375:6828..7023Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9375 6829..7023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9375.28171.1

>prot_D-dudresnayi_contig9375.28171.1 ID=prot_D-dudresnayi_contig9375.28171.1|Name=mRNA_D-dudresnayi_contig9375.28171.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=78bp
MVGKIDPITFIDQITRLELCALEVFLRRRTESGDADKTSPPSELSTVLLG
SDLAEAFPEARVERVSAGGVLPDTWIE*
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mRNA from alignment at D-dudresnayi_contig9375:5627..7221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9375.28171.1 ID=mRNA_D-dudresnayi_contig9375.28171.1|Name=mRNA_D-dudresnayi_contig9375.28171.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1595bp|location=Sequence derived from alignment at D-dudresnayi_contig9375:5627..7221+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTTGTCTTGGCAGAGCACACCAACTTCTCCGATAGCGCGCTCTTTTCCCC
GAGGATATCGCGATCGCTCGGAATGGTGGGCAAGATAGACCCCATCACGT
TCATTGATCAGGTGGGTTGCCTCTAGAGCTGAGGCGTGCTACGGTAATGA
GAGGGGGGGGATACCCAAATTTTGTTAGGACTCCTCACGTGAGAACCTCT
ATGTCTCACCCAAAAACGATCTTAGACAAAACAATCTCCCGCCCATGGGT
CTAACGCCCAATCTCCGACGACTGGGGTGATGAGGTGTCGCTGTCGTTGT
TGTTGTCTTCGAATTAAAAGGCGTCATTTCTACGATACGACATCCAGCAG
CATACTCAGAGTCTGTGTGCTGATTGTTCCATCCTAGAGAGATGCGAAAT
TCCGTGGTCACAAGCTGTATGTCAACACAGTAGGAGTAGCACTAAATCGC
AAATAGAGCAAAAATAATAAGAGAGCCAGCACTAAAAACGACCGGGGCAA
GGCGATTTTTGACGTTTAATTTTTGTGTTTCGTTGTTTTGAGGAAGAATA
TCCTCTGTATTTTACAGAGGGTTCCTCGATTGTACCAGAAGTTTGCCTTC
CTTTTGTTTCTTAGTTTCGCGTTTGCTGTCTGTCGCTCGCGCGCGCGGCC
TCTGTTTTCACGTGGTGGAGGTGGAATGCTGTGTAGTTTTCGTCGCTGGT
ACACGCGTCCAAATAATTTTTGGTGTTGTGGTTATTGTTGTTGTATATTC
TGTGGCCTGCGGACACTGACTCGGGCAAAGGTGAAACGGCCTCTAGTAGT
TGATTTAGTTGTTTTTTACGAAAAAAGAATATCTTCGGAGGACCGAATAC
GAAAAAAATCAGCGTGACTATAAAATGCACTTTGAAACCGACAGGGCGGG
GGCGAGGGGTGGAAACTAAAAACCGACTGTTGTTTACGAACTATACATGT
ATACCATGGTGTACCGAAAATACGAGCCTAGACTACTATATATGATATTT
GCGGTTAATGCGGCCGCCGTAGCTCGCTCCGGCTATTCGACCAATCCGAC
TACGTTGTGTCAACTGCGAACGCACGACGAGGGCCGCAGCACACGCTTAG
CTTGCAATACGGCACCACCCCGGGGAAAGTAAGTGCAGTCACTCACGCTG
CCAATAAGTTTAATTTCCTGCGCTTCGAACCGACCTTTGGCCCCCAATAC
AGATCACGCGATTGGAACTGTGCGCGCTAGAAGTATTTCTCCGGAGGCGA
ACAGAGTCCGGGGACGCGGATAAAACGTCCCCTCCCTCAGAGTTGTCGAC
GGTTCTGCTTGGGTCCGACTTGGCCGAGGCGTTTCCGGAGGCGAGGGTTG
AAAGGGTCAGCGCCGGTGGCGTCCTCCCTGACACATGGATAGAGTAGACA
GCTAGCCGTGATGTACATGTAGGTGTCAATAGTGACGCACCCGCAGCAAA
GCTAACGTTCCCATCGTTTTTAGTTTTTATTGTCGGTTTTGGGAGGCAGG
AAGAGAGTCCACCCCTGACGCGTGGTTGAGCGGGGCTGTGACGTGATGAC
GCTCAAGCAAGAGTTTGTGTTGGAATGTATTTTGTGCGCGGATTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9375:5627..7221+

>mRNA_D-dudresnayi_contig9375.28171.1 ID=mRNA_D-dudresnayi_contig9375.28171.1|Name=mRNA_D-dudresnayi_contig9375.28171.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at D-dudresnayi_contig9375:5627..7221+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGGGCAAGATAGACCCCATCACGTTCATTGATCAGATGGTGGGCAA
GATAGACCCCATCACGTTCATTGATCAGATCACGCGATTGGAACTGTGCG
CGCTAGAAGTATTTCTCCGGAGGCGAACAGAGTCCGGGGACGCGGATAAA
ACGTCCCCTCCCTCAGAGTTGTCGACGGTTCTGCTTGGGTCCGACTTGGC
CGAGGCGTTTCCGGAGGCGAGGGTTGAAAGGGTCAGCGCCGGTGGCGTCC
TCCCTGACACATGGATAGAGTAGATCACGCGATTGGAACTGTGCGCGCTA
GAAGTATTTCTCCGGAGGCGAACAGAGTCCGGGGACGCGGATAAAACGTC
CCCTCCCTCAGAGTTGTCGACGGTTCTGCTTGGGTCCGACTTGGCCGAGG
CGTTTCCGGAGGCGAGGGTTGAAAGGGTCAGCGCCGGTGGCGTCCTCCCT
GACACATGGATAGAGTAG
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