mRNA_D-dudresnayi_contig93.28096.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig93.28096.1
Unique NamemRNA_D-dudresnayi_contig93.28096.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig93.28096.1 vs. uniprot
Match: A0A7S3M8J4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8J4_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.180e-31
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 2 
Query:   14 MSFKVALLVVLLGICSALAEYTQPSIWPQPKSFITGQEQTTVAPFMYISVNGNVKTLSDAYERTNKLIFNHAPD 235
            MS +VA+L +L+G+ S +AEYTQPSIWPQPKSF+TGQ QT V PF Y+S NGNVKTLS+AY+R NKLIFNHA D
Sbjct:    1 MSIRVAILAILVGVISVVAEYTQPSIWPQPKSFVTGQSQTNVLPFQYVSKNGNVKTLSEAYDRNNKLIFNHAVD 74
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BLAST of mRNA_D-dudresnayi_contig93.28096.1 vs. uniprot
Match: A0A7S3M9N8_9STRA (Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9N8_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.130e-30
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 2 
Query:   14 MSFKVALLVVLLGICSALAEYTQPSIWPQPKSFITGQEQTTVAPFMYISVNGNVKTLSDAYERTNKLIFNHAPD 235
            MS +VA+L +L+G+ S +AEYTQPSIWPQPKSF+TGQ QT V PF Y+S NGNVKTLS+AY+R NKLIFNHA D
Sbjct:    1 MSIRVAILAILVGVISVVAEYTQPSIWPQPKSFVTGQSQTNVLPFQYVSKNGNVKTLSEAYDRNNKLIFNHAVD 74
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig93.28096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3M8J4_9STRA2.180e-3171.62Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3M9N8_9STRA1.130e-3071.62Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=Spu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig93contigD-dudresnayi_contig93:21001..21304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size243
Cds size228
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig93.28096.1prot_D-dudresnayi_contig93.28096.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig93 21001..21291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930868.152457-CDS-D-dudresnayi_contig93:21000..211411622930868.152457-CDS-D-dudresnayi_contig93:21000..21141Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig93 21001..21141 -
1690557946.3323238-CDS-D-dudresnayi_contig93:21000..211411690557946.3323238-CDS-D-dudresnayi_contig93:21000..21141Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig93 21001..21141 -
1622930868.1673033-CDS-D-dudresnayi_contig93:21204..212911622930868.1673033-CDS-D-dudresnayi_contig93:21204..21291Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig93 21205..21291 -
1690557946.346992-CDS-D-dudresnayi_contig93:21204..212911690557946.346992-CDS-D-dudresnayi_contig93:21204..21291Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig93 21205..21291 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930868.1869333-UTR-D-dudresnayi_contig93:21291..213041622930868.1869333-UTR-D-dudresnayi_contig93:21291..21304Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig93 21292..21304 -
1690557946.356283-UTR-D-dudresnayi_contig93:21291..213041690557946.356283-UTR-D-dudresnayi_contig93:21291..21304Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig93 21292..21304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig93.28096.1

>prot_D-dudresnayi_contig93.28096.1 ID=prot_D-dudresnayi_contig93.28096.1|Name=mRNA_D-dudresnayi_contig93.28096.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=76bp
MSFKVALLVVLLGICSALAEYTQPSIWPQPKSFITGQEQTTVAPFMYISV
NGNVKTLSDAYERTNKLIFNHAPDGD
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mRNA from alignment at D-dudresnayi_contig93:21001..21304-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig93.28096.1 ID=mRNA_D-dudresnayi_contig93.28096.1|Name=mRNA_D-dudresnayi_contig93.28096.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=304bp|location=Sequence derived from alignment at D-dudresnayi_contig93:21001..21304- (Desmarestia dudresnayi DdudBR16 monoicous)
ATAGATTAAAATCATGTCATTTAAGGTCGCTCTTCTCGTTGTTCTATTGG
GTATCTGCTCCGCTCTTGCTGAGTATACTCAGCCATCAATTTGGCCTCAG
GTAAATTTTAAAACATAAGAAATTATTGTTTAGCATTGCTGATTACTGCA
TTCGTTTTGTTAGCCAAAATCCTTTATTACTGGTCAAGAACAAACTACTG
TTGCCCCATTTATGTACATTTCTGTAAATGGAAATGTGAAAACACTTAGT
GATGCTTATGAACGCACCAACAAATTGATTTTTAATCATGCCCCTGATGG
TGAT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig93:21001..21304-

>mRNA_D-dudresnayi_contig93.28096.1 ID=mRNA_D-dudresnayi_contig93.28096.1|Name=mRNA_D-dudresnayi_contig93.28096.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at D-dudresnayi_contig93:21001..21304- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCATTTAAGGTCGCTCTTCTCGTTGTTCTATTGGGTATCTGCTCCGC
TCTTGCTGAGTATACTCAGCCATCAATTTGGCCTCAGATGTCATTTAAGG
TCGCTCTTCTCGTTGTTCTATTGGGTATCTGCTCCGCTCTTGCTGAGTAT
ACTCAGCCATCAATTTGGCCTCAGCCAAAATCCTTTATTACTGGTCAAGA
ACAAACTACTGTTGCCCCATTTATGTACATTTCTGTAAATGGAAATGTGA
AAACACTTAGTGATGCTTATGAACGCACCAACAAATTGATTTTTAATCAT
GCCCCTGATGGTGATCCAAAATCCTTTATTACTGGTCAAGAACAAACTAC
TGTTGCCCCATTTATGTACATTTCTGTAAATGGAAATGTGAAAACACTTA
GTGATGCTTATGAACGCACCAACAAATTGATTTTTAATCATGCCCCTGAT
GGTGAT
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