mRNA_D-dudresnayi_contig93.28095.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig93.28095.1
Unique NamemRNA_D-dudresnayi_contig93.28095.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig93.28095.1 vs. uniprot
Match: A0A7S3M9N8_9STRA (Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9N8_9STRA)

HSP 1 Score: 169 bits (427), Expect = 7.810e-51
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 PMQIEDAPRYPHRGMLLDTSRHYQPITFLQQTVDALSYAKYNVLHWHVVDTQSFPIESKSYPKLWNGAYSSAEKYSRSDVKALVEYARSR 270
            PMQIEDAPRYPHRGMLLDTSRH+QPI F+QQT+DALSYAKYNVLHWHVVDTQSFP ESK+Y KLWNGAY++AEKYSR+DVK LVEY RSR
Sbjct:  157 PMQIEDAPRYPHRGMLLDTSRHFQPIPFIQQTIDALSYAKYNVLHWHVVDTQSFPFESKTYEKLWNGAYTNAEKYSRADVKQLVEYGRSR 246
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BLAST of mRNA_D-dudresnayi_contig93.28095.1 vs. uniprot
Match: A0A482RPH9_9ARCH (Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPH9_9ARCH)

HSP 1 Score: 137 bits (346), Expect = 1.230e-38
Identity = 59/90 (65.56%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    1 PMQIEDAPRYPHRGMLLDTSRHYQPITFLQQTVDALSYAKYNVLHWHVVDTQSFPIESKSYPKLWNGAYSSAEKYSRSDVKALVEYARSR 270
            P+ + DAPRYPHRG+LLDTSRH+QP++F+Q  +D+L+YAKYNV HWHVVDTQSFP +S S P+LW GAYS  EKYS  D+  +VEY R R
Sbjct:  122 PIYVADAPRYPHRGVLLDTSRHFQPVSFIQNVIDSLAYAKYNVFHWHVVDTQSFPFQSLSSPRLWMGAYSKTEKYSHEDIVQIVEYGRQR 211
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BLAST of mRNA_D-dudresnayi_contig93.28095.1 vs. uniprot
Match: A0A7S3TCV5_9SPIT (Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TCV5_9SPIT)

HSP 1 Score: 122 bits (306), Expect = 5.830e-34
Identity = 51/87 (58.62%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:   10 IEDAPRYPHRGMLLDTSRHYQPITFLQQTVDALSYAKYNVLHWHVVDTQSFPIESKSYPKLWNGAYSSAEKYSRSDVKALVEYARSR 270
            I DAPR+PHRG+++DT+RH++P++ ++  +DAL YAK NVLHWH+VD QSFP +S S P+LW+GA+S +E+Y+++DV A+VEYAR R
Sbjct:   15 IRDAPRFPHRGLMIDTARHFEPLSAIRAMIDALPYAKLNVLHWHMVDAQSFPFQSLSSPRLWDGAFSPSERYTQADVAAVVEYARLR 101
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BLAST of mRNA_D-dudresnayi_contig93.28095.1 vs. uniprot
Match: A0A7S4GFU7_9EUGL (Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GFU7_9EUGL)

HSP 1 Score: 130 bits (326), Expect = 1.240e-33
Identity = 53/90 (58.89%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 PMQIEDAPRYPHRGMLLDTSRHYQPITFLQQTVDALSYAKYNVLHWHVVDTQSFPIESKSYPKLWNGAYSSAEKYSRSDVKALVEYARSR 270
            P++I+D PR+PHRG+++DT RH+QP+  ++  +D+L YAK NVLHWH+ D+QSFP ESK+YP+LW GAYS  EKY+++D+ A+VEYAR+R
Sbjct:  169 PIRIQDRPRFPHRGLMIDTGRHFQPLASIRSVIDSLPYAKINVLHWHMSDSQSFPFESKTYPRLWAGAYSDFEKYTQADIAAVVEYARAR 258
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BLAST of mRNA_D-dudresnayi_contig93.28095.1 vs. uniprot
Match: A0A388JNH7_CHABU (Beta-N-acetylhexosaminidase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JNH7_CHABU)

HSP 1 Score: 130 bits (328), Expect = 1.770e-33
Identity = 56/90 (62.22%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    1 PMQIEDAPRYPHRGMLLDTSRHYQPITFLQQTVDALSYAKYNVLHWHVVDTQSFPIESKSYPKLWNGAYSSAEKYSRSDVKALVEYARSR 270
            P  I+D+PR+PHRG+L+DTSRH+QP+  ++  VD+LS+AK NVLHWH+VDTQ+FP+E   YP LWNGAYS  E+Y+  DVK +VEYAR R
Sbjct:  332 PWAIQDSPRFPHRGVLIDTSRHFQPVAAIKGVVDSLSFAKLNVLHWHIVDTQAFPLEVPKYPLLWNGAYSEQERYTTEDVKEVVEYARQR 421
[Close]
BLAST of mRNA_D-dudresnayi_contig93.28095.1 vs. uniprot
Match: A9SED9_PHYPA (Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SED9_PHYPA)

HSP 1 Score: 127 bits (320), Expect = 3.080e-33
Identity = 55/90 (61.11%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    1 PMQIEDAPRYPHRGMLLDTSRHYQPITFLQQTVDALSYAKYNVLHWHVVDTQSFPIESKSYPKLWNGAYSSAEKYSRSDVKALVEYARSR 270
            P  I+D PR+P+RG+L+DTSRHYQP+T +++ +D+++Y+K NVLHWH+VD QSFPIE  SYP LWNGAYS AE+Y+  D + +VEYAR R
Sbjct:   59 PCFIKDFPRFPYRGLLIDTSRHYQPVTSIKRVLDSMAYSKLNVLHWHIVDEQSFPIEIPSYPLLWNGAYSYAERYTMDDAREIVEYARLR 148
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BLAST of mRNA_D-dudresnayi_contig93.28095.1 vs. uniprot
Match: UPI000D1C8D7D (beta-hexosaminidase 3 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C8D7D)

HSP 1 Score: 127 bits (319), Expect = 5.580e-33
Identity = 53/90 (58.89%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    1 PMQIEDAPRYPHRGMLLDTSRHYQPITFLQQTVDALSYAKYNVLHWHVVDTQSFPIESKSYPKLWNGAYSSAEKYSRSDVKALVEYARSR 270
            P+ I D PR+ +RG+L+DTSRHY+P+  ++  +D+++YAK NVLHWH+VDTQSFP+E  S+PKLWNGAY+ AE+Y+  D K +VEYAR R
Sbjct:   83 PVDIVDRPRFEYRGLLIDTSRHYEPLKIVRSVIDSMAYAKLNVLHWHIVDTQSFPLEIPSFPKLWNGAYTGAERYTLEDAKGIVEYARLR 172
[Close]
BLAST of mRNA_D-dudresnayi_contig93.28095.1 vs. uniprot
Match: A0A2K1JR56_PHYPA (Beta-hexosaminidase n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JR56_PHYPA)

HSP 1 Score: 127 bits (320), Expect = 1.340e-32
Identity = 55/90 (61.11%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    1 PMQIEDAPRYPHRGMLLDTSRHYQPITFLQQTVDALSYAKYNVLHWHVVDTQSFPIESKSYPKLWNGAYSSAEKYSRSDVKALVEYARSR 270
            P  I+D PR+P+RG+L+DTSRHYQP+T +++ +D+++Y+K NVLHWH+VD QSFPIE  SYP LWNGAYS AE+Y+  D + +VEYAR R
Sbjct:  204 PCFIKDFPRFPYRGLLIDTSRHYQPVTSIKRVLDSMAYSKLNVLHWHIVDEQSFPIEIPSYPLLWNGAYSYAERYTMDDAREIVEYARLR 293
[Close]
BLAST of mRNA_D-dudresnayi_contig93.28095.1 vs. uniprot
Match: D8SEX9_SELML (Beta-hexosaminidase n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SEX9_SELML)

HSP 1 Score: 127 bits (319), Expect = 1.450e-32
Identity = 53/90 (58.89%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    1 PMQIEDAPRYPHRGMLLDTSRHYQPITFLQQTVDALSYAKYNVLHWHVVDTQSFPIESKSYPKLWNGAYSSAEKYSRSDVKALVEYARSR 270
            P+ I D PR+ +RG+L+DTSRHY+P+  ++  +D+++YAK NVLHWH+VDTQSFP+E  S+PKLWNGAY+ AE+Y+  D K +VEYAR R
Sbjct:  168 PVDIVDRPRFEYRGLLIDTSRHYEPLKIVRSVIDSMAYAKLNVLHWHIVDTQSFPLEIPSFPKLWNGAYTGAERYTLEDAKGIVEYARLR 257
[Close]
BLAST of mRNA_D-dudresnayi_contig93.28095.1 vs. uniprot
Match: A0A822Y1H4_NELNU (Beta-N-acetylhexosaminidase n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822Y1H4_NELNU)

HSP 1 Score: 124 bits (311), Expect = 1.850e-32
Identity = 51/90 (56.67%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 PMQIEDAPRYPHRGMLLDTSRHYQPITFLQQTVDALSYAKYNVLHWHVVDTQSFPIESKSYPKLWNGAYSSAEKYSRSDVKALVEYARSR 270
            P  I+D PR+ +RG+L+DTSRHYQP+  +++ +DA++Y K NVLHWH+VD+QSFP+E  SYPKLWNGAYS++E+Y+  D   +V YA+ R
Sbjct:  165 PCTIDDQPRFSYRGLLIDTSRHYQPLPMIKKVIDAMAYTKLNVLHWHIVDSQSFPLEIPSYPKLWNGAYSTSERYTMDDAAEIVRYAQRR 254
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig93.28095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3M9N8_9STRA7.810e-5186.67Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=Spu... [more]
A0A482RPH9_9ARCH1.230e-3865.56Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=arc... [more]
A0A7S3TCV5_9SPIT5.830e-3458.62Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=Str... [more]
A0A7S4GFU7_9EUGL1.240e-3358.89Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=Eut... [more]
A0A388JNH7_CHABU1.770e-3362.22Beta-N-acetylhexosaminidase n=1 Tax=Chara braunii ... [more]
A9SED9_PHYPA3.080e-3361.11Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=Phy... [more]
UPI000D1C8D7D5.580e-3358.89beta-hexosaminidase 3 n=1 Tax=Selaginella moellend... [more]
A0A2K1JR56_PHYPA1.340e-3261.11Beta-hexosaminidase n=1 Tax=Physcomitrium patens T... [more]
D8SEX9_SELML1.450e-3258.89Beta-hexosaminidase n=4 Tax=Selaginella moellendor... [more]
A0A822Y1H4_NELNU1.850e-3256.67Beta-N-acetylhexosaminidase n=1 Tax=Nelumbo nucife... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig93contigD-dudresnayi_contig93:20199..20751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score129.8
Seed ortholog evalue6.3e-28
Seed eggNOG ortholog3218.PP1S70_132V6.1
KEGG rclassRC00049
KEGG koko:K12373
KEGG ReactionR00022,R06004,R11316
KEGG Pathwayko00511,ko00513,ko00520,ko00531,ko00603,ko00604,ko01100,ko04142,map00511,map00513,map00520,map00531,map00603,map00604,map01100,map04142
KEGG ModuleM00079
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004563,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0005886,GO:0009505,GO:0015929,GO:0016020,GO:0016787,GO:0016798,GO:0030312,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.Beta-hexosaminidase
EggNOG OGs37R3M@33090,3GBW1@35493,COG3525@1,KOG2499@2759
EC3.2.1.52
COG Functional cat.G
CAZyGH20
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Exons3
Model size270
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig93.28095.1prot_D-dudresnayi_contig93.28095.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig93 20199..20748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930868.8996615-CDS-D-dudresnayi_contig93:20198..202801622930868.8996615-CDS-D-dudresnayi_contig93:20198..20280Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig93 20199..20280 -
1690557946.5021267-CDS-D-dudresnayi_contig93:20198..202801690557946.5021267-CDS-D-dudresnayi_contig93:20198..20280Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig93 20199..20280 -
1622930868.9151092-CDS-D-dudresnayi_contig93:20498..206461622930868.9151092-CDS-D-dudresnayi_contig93:20498..20646Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig93 20499..20646 -
1690557946.5132754-CDS-D-dudresnayi_contig93:20498..206461690557946.5132754-CDS-D-dudresnayi_contig93:20498..20646Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig93 20499..20646 -
1622930868.9310706-CDS-D-dudresnayi_contig93:20711..207481622930868.9310706-CDS-D-dudresnayi_contig93:20711..20748Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig93 20712..20748 -
1690557946.5232608-CDS-D-dudresnayi_contig93:20711..207481690557946.5232608-CDS-D-dudresnayi_contig93:20711..20748Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig93 20712..20748 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930868.9478693-UTR-D-dudresnayi_contig93:20748..207511622930868.9478693-UTR-D-dudresnayi_contig93:20748..20751Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig93 20749..20751 -
1690557946.5316925-UTR-D-dudresnayi_contig93:20748..207511690557946.5316925-UTR-D-dudresnayi_contig93:20748..20751Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig93 20749..20751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig93.28095.1

>prot_D-dudresnayi_contig93.28095.1 ID=prot_D-dudresnayi_contig93.28095.1|Name=mRNA_D-dudresnayi_contig93.28095.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=89bp
MQIEDAPRYPHRGMLLDTSRHYQPITFLQQTVDALSYAKYNVLHWHVVDT
QSFPIESKSYPKLWNGAYSSAEKYSRSDVKALVEYARSR
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mRNA from alignment at D-dudresnayi_contig93:20199..20751-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig93.28095.1 ID=mRNA_D-dudresnayi_contig93.28095.1|Name=mRNA_D-dudresnayi_contig93.28095.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=553bp|location=Sequence derived from alignment at D-dudresnayi_contig93:20199..20751- (Desmarestia dudresnayi DdudBR16 monoicous)
CCAATGCAAATTGAGGATGCACCTAGATATCCTCATAGAGGTATATTTTC
TATTTGGTAATTGCTATTTGTCATTATAACCTCCATTATGCACAATATTA
TATAGGTATGTTGTTGGACACATCCCGTCACTACCAACCCATCACCTTCC
TGCAGCAGACAGTAGACGCACTATCCTATGCTAAGTACAATGTATTGCAC
TGGCATGTGGTGGACACCCAGAGCTTCCCGATTGAGTCCAAATCATATCC
CAAGTAAGTGCAAGTTAGCCCTTTCCTGCATAGATATAATTATTGTAGGA
GTATAATAGTGGTAGTACTGTAGGAGTAGTAAGTATGTGTCTGATGTATC
TATAATACGGTAGGGCAGTAGGAGTACTGTAGTAGTATACACTAAACTAG
AGTTTTTCATTATTAGATTATAATTAACATTATATTTGCTCTACTACTAT
AACAATAACACATTAAAATAGGCTCTGGAACGGTGCCTATTCTAGTGCAG
AGAAATATTCCCGGTCCGATGTGAAGGCACTAGTGGAATATGCCCGCAGT
CGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig93:20199..20751-

>mRNA_D-dudresnayi_contig93.28095.1 ID=mRNA_D-dudresnayi_contig93.28095.1|Name=mRNA_D-dudresnayi_contig93.28095.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at D-dudresnayi_contig93:20199..20751- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCAAATTGAGGATGCACCTAGATATCCTCATAGAGATGCAAATTGAGG
ATGCACCTAGATATCCTCATAGAGGTATGTTGTTGGACACATCCCGTCAC
TACCAACCCATCACCTTCCTGCAGCAGACAGTAGACGCACTATCCTATGC
TAAGTACAATGTATTGCACTGGCATGTGGTGGACACCCAGAGCTTCCCGA
TTGAGTCCAAATCATATCCCAAGTATGTTGTTGGACACATCCCGTCACTA
CCAACCCATCACCTTCCTGCAGCAGACAGTAGACGCACTATCCTATGCTA
AGTACAATGTATTGCACTGGCATGTGGTGGACACCCAGAGCTTCCCGATT
GAGTCCAAATCATATCCCAAGCTCTGGAACGGTGCCTATTCTAGTGCAGA
GAAATATTCCCGGTCCGATGTGAAGGCACTAGTGGAATATGCCCGCAGTC
GAGCTCTGGAACGGTGCCTATTCTAGTGCAGAGAAATATTCCCGGTCCGA
TGTGAAGGCACTAGTGGAATATGCCCGCAGTCGA
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