|
Homology
BLAST of mRNA_D-dudresnayi_contig9268.28058.1 vs. uniprot
Match: A0A6H5JLQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ8_9PHAE) HSP 1 Score: 209 bits (533), Expect = 2.160e-57 Identity = 194/499 (38.88%), Postives = 238/499 (47.70%), Query Frame = 1
Query: 1 RGRGTRDTMQITIDSQSFVNLGQLMGSSLGHGISGSSPAAAVPPGLSPACTTPAG-NNLGASSFLSDSSD---GLRDFDHIFHPAKSTSSAW--SGHGVCSDNEE----AADEQD------EDDNDSVLPALPSRSPTPGSP-----ASSELNSNRCPL------NASEAGWA-DDLSNAASAVGGSSNMNACVLDAS-ADGQCPRGALGLGAGVLTGKPACVEKQVVTSDMKNITEDRHVQPSASITSAPSSSSSPSTPLTVVDEGATAGEAPACLSASLLRESWLHVNQDGIDQGDDSAVIDSEGVAETKAQQQQAEAGTAGGCACGERARRI-------------GAVLGECGSCFVSGAAKAAALFRPRVQQLVERAKVPVQAGADAYQRGQQAFVDTVDNVPQAPVRMWLGRIAGSLVLGVILGGAAAYYALPRMMTSASVACNPNDATSPWWNTPESS----TGGTEQSFGDRLNKALFAARAGEAAAQQGLL 1359
RG G RD M++++DSQSFVNLGQLMGS G TT G + +SFLSD D GLRDFD IFHPA +++S SG + AAD Q +DDNDSVLPALPSRS TPGSP ++S +S+ P +A+ AGW DD + ASA G + D A G P L + T T+ IT +QP S+ +S T T E A +G S LRESWLHV GDD + LG+CG C V G +A AL + R ++ KV V AGADA RGQ+A V VD+VPQAPVR+WLGR+A S+V+G++LG AA + AL T C DATSPWW+T + GG +QSFGDRL+KALFAARAGEAAAQQGLL
Sbjct: 23 RGNGFRD-MEMSVDSQSFVNLGQLMGSRHGXXXXX------XXXXXXXXXTTRTGLEDFACTSFLSDDDDDSEGLRDFDQIFHPAATSTSGARSSGRELYGQQRHRGGGAADHQHGDGGVLDDDNDSVLPALPSRSSTPGSPRGYSTSNSGNSSSSKPYFIAPAASAAGAGWVEDDFGSGASARRGGGRVGHASCDHRLATGGAPENNLPQNTDITT--------HTKTTPAAGITSPE-IQPGGSVAQQSGTSQ---TAATAGGETAASGS-----STPFLRESWLHVPV-----GDDDEIKSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAQALGDCGDCLVRGVGRAGALAKARALEVGRAVKVHVDAGADACSRGQKAAVKAVDSVPQAPVRVWLGRVALSIVVGIVLGSAATFCALRAATTKMGSVCAGADATSPWWSTGGAGDSVGAGGADQSFGDRLDKALFAARAGEAAAQQGLL 492
BLAST of mRNA_D-dudresnayi_contig9268.28058.1 vs. uniprot
Match: D7G053_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G053_ECTSI) HSP 1 Score: 111 bits (278), Expect = 4.650e-23 Identity = 133/405 (32.84%), Postives = 168/405 (41.48%), Query Frame = 1
Query: 1 RGRGTRDTMQITIDSQSFVNLGQLMGSSLGHGISGSSPAAAVPPGLSPACTTPAGNNLGASSFLSDSSD---GLRDFDHIFHPAK-STSSAWSGH-----------GVCSDNEEAADEQDEDDNDSVLPALPSRSPTPGSP-----ASSELNSNRCPL------NASEAGWAD-DLSNAASAVGGSSNMNACVLDASADGQCPRGALGLGAGVLTGKPACVEKQVVTSDMKNITEDRHVQPSASITSAPSSSSSPSTPLTVVDEGATAGEAPACLSAS--LLRESWLHVNQDGIDQGDDSAVIDSEGVAETKAQQQQAEAGTAGGCACGERARRI--------GAVLGECGSCFVSGAAKAAALFRPRVQQLVERAKVPVQAGADAYQRGQQAFVDTVDNVPQAP 1104
RG G RD M++++DSQSFVNLGQLMGS G ++L +SFLSD D GLRDFD IFHPA STS AWS G D++ +DDNDSVLPALPSRS TPGSP ++S +S+ P +A+ AGW + D + A A G + AS D + G L + + +QP S+T +S + A GE A +S LRESWLHV D+ A LG+CG C V G +A AL + R + KV V+AGADA RGQ+A V VD+VPQAP
Sbjct: 60 RGNGFRD-MEMSVDSQSFVNLGQLMGSRHGXXXXXXXXXXXXXXXXRTGL-----DDLACTSFLSDDDDDSEGLRDFDQIFHPAATSTSGAWSSGRELYGQQRHRGGGAVDHQHGDGGAFDDDNDSVLPALPSRSSTPGSPRGYLTSNSGNSSSSKPYFVASAASAAGAGWVEEDFGSGAGARRGGGRVG----HASCDHRLATGGA-LENNLTQNTDTTTHTKATAPAAAAAITSPEIQPGGSLTQQSGTSRT---------AAAAGGEIAAASGSSTPFLRESWLHVPIGDEDEIKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAQALGDCGDCLVRGVGRAGALAKARALEFGRAVKVQVEAGADACSRGQKAAVKAVDSVPQAP 444
BLAST of mRNA_D-dudresnayi_contig9268.28058.1 vs. uniprot
Match: D7G052_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G052_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 4.420e-12 Identity = 43/73 (58.90%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 1153 ILGGAAAYYALPRMMTSASVACNPNDATSPWWNTPESS----TGGTEQSFGDRLNKALFAARAGEAAAQQGLL 1359
+LG AA + AL T C DATSPWW+T + GG +QSFGDRL+KALFAARAGEAAAQQGLL
Sbjct: 1 MLGSAATFCALRAATTKTGSVCAGADATSPWWSTGGAGDSVGAGGADQSFGDRLDKALFAARAGEAAAQQGLL 73
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-12_007270.1 |
Exons | 2 |
Model size | 1383 |
Cds size | 1359 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622930864.6095216-UTR-D-dudresnayi_contig9268:3378..3402 | 1622930864.6095216-UTR-D-dudresnayi_contig9268:3378..3402 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9268 3379..3402 - |
1690557944.8937397-UTR-D-dudresnayi_contig9268:3378..3402 | 1690557944.8937397-UTR-D-dudresnayi_contig9268:3378..3402 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9268 3379..3402 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig9268.28058.1 >prot_D-dudresnayi_contig9268.28058.1 ID=prot_D-dudresnayi_contig9268.28058.1|Name=mRNA_D-dudresnayi_contig9268.28058.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=453bp
MQITIDSQSFVNLGQLMGSSLGHGISGSSPAAAVPPGLSPACTTPAGNNL GASSFLSDSSDGLRDFDHIFHPAKSTSSAWSGHGVCSDNEEAADEQDEDD NDSVLPALPSRSPTPGSPASSELNSNRCPLNASEAGWADDLSNAASAVGG SSNMNACVLDASADGQCPRGALGLGAGVLTGKPACVEKQVVTSDMKNITE DRHVQPSASITSAPSSSSSPSTPLTVVDEGATAGEAPACLSASLLRESWL HVNQDGIDQGDDSAVIDSEGVAETKAQQQQAEAGTAGGCACGERARRIGA VLGECGSCFVSGAAKAAALFRPRVQQLVERAKVPVQAGADAYQRGQQAFV DTVDNVPQAPVRMWLGRIAGSLVLGVILGGAAAYYALPRMMTSASVACNP NDATSPWWNTPESSTGGTEQSFGDRLNKALFAARAGEAAAQQGLLVRLEL NG* back to topmRNA from alignment at D-dudresnayi_contig9268:85..3402- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig9268.28058.1 ID=mRNA_D-dudresnayi_contig9268.28058.1|Name=mRNA_D-dudresnayi_contig9268.28058.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3318bp|location=Sequence derived from alignment at D-dudresnayi_contig9268:85..3402- (Desmarestia dudresnayi DdudBR16 monoicous) AGAGGCAGGGGGACGCGAGACACCATGCAGATCACCATCGACTCACAAAG
CTTCGTGAATCTCGGGCAGTTGATGGGCAGCAGCCTTGGCCATGGAATCT
CGGGAAGCTCCCCTGCTGCGGCGGTACCTCCCGGGTTGTCGCCGGCGTGT
ACGACCCCTGCAGGCAATAATCTGGGCGCTTCCTCTTTTCTTTCCGACAG
CTCAGACGGTCTGAGGGACTTCGATCACATCTTCCACCCTGCGAAATCTA
CCTCGAGTGCCTGGTCGGGACACGGTGTTTGTTCTGACAACGAGGAGGCT
GCTGACGAGCAAGACGAGGATGACAACGACAGCGTTCTCCCTGCGTTGCC
TTCCCGCAGCCCCACTCCCGGATCTCCCGCAAGCTCAGAGTTGAACTCGA
ACAGATGCCCTCTCAACGCTTCGGAAGCTGGTTGGGCGGACGATCTAAGC
AATGCTGCGTCCGCGGTTGGAGGGAGCAGCAACATGAACGCCTGTGTCCT
CGATGCCTCTGCCGATGGCCAATGCCCGAGGGGGGCTCTTGGTCTTGGTG
CGGGTGTGCTCACTGGTAAGCCTGCCTGCGTTGAGAAACAGGTCGTTACA
TCGGACATGAAAAACATCACGGAAGACCGTCATGTTCAACCTTCCGCCTC
TATTACTAGCGCCCCGTCCTCCTCCTCCTCCCCGTCGACGCCACTGACTG
TAGTGGATGAGGGTGCCACGGCGGGCGAAGCACCGGCATGTTTGTCTGCC
TCGCTTCTCCGCGAGTCCTGGCTGCACGTTAACCAGGATGGTATCGACCA
GGGTGACGATAGTGCTGTTATTGACAGTGAGGGTGTTGCGGAAACTAAGG
CACAGCAACAGCAGGCAGAAGCGGGAACCGCTGGGGGCTGCGCCTGCGGC
GAGAGGGCCCGACGGATCGGCGCTGTCCTCGGTGAGTGCGGCTCTTGCTT
TGTTAGCGGTGCGGCCAAGGCTGCGGCGCTCTTCCGACCCCGGGTGCAGC
AGCTTGTTGAGCGCGCCAAGGTCCCGGTTCAGGCTGGTGCCGATGCGTAT
CAGAGGGGACAACAAGCCTTCGTGGACACTGTGGATAACGTGCCGCAGGC
CCCAGGTGTGTGTGGTGTGTGTATTATACATATAGAGCTTTTTTGACAGT
TGATAGTTAATACTTATAGGGGTGTGTTGTGTGAGAAGAGAGAGGAGGGG
GTGGGGGGGTAGCGCTTGGGTGTTGGGTGCGCTGTTACTGCAGCGATGTT
TTCGTGGCGATACTGGCAGTGGCTCCACACAATATAATCATTATTTTTGA
ATTACTAGCACTAGTGCTGTCTGTTGTATCATACTATAATGGCATAGTAT
CATAGGCTGTCTCAGGTGTGTGATTGACAAATGATACTCGTAGCACTACT
CGTACAGTACAATGATACTATGATACTATTATACTATTATACCAGTAGTT
GTTGTTGATGTACTCCTTCCTGTTCATCATGTCTTTTGTTCTGATTTTTT
TCGAGCGCATTTCGTTGAATGTCATCATACGAGTACGAGTAGTGGTCATC
TCCTGTTCCTCAGTTCTCCTGTCTATACTCGTCATAGAGAGAACTCTATG
GAAGACATAACTGTTTTTATCTTGCTAAACGCGTATAATACGATGGAAGT
CGACTTCGATGCTCATGCCTTTGTCCCGGGTACTCTAAACTAGCATGCTA
TCTGTATGAATATGGCAAAGGAGTGGTGAATCATCAAGAGTCAAGAGTAC
AGTCTGTAGACCCGAATACAAAACCTGGAATGTATCATACCGTAGATTTT
CCAATTCCAAGCCGTTGTCGGTTGTCACAAGGTACTGACTGTCCCACCTC
TCAAGTGTGTTTGCCTCTCGCTGATGTTTATGTTATACAATATTAATAGT
AGTACAGCAGTATCATACGGCCTTTACTGGTTTCTTCCTCTCCCTGAGAC
AATGCCCCTGGTTGAAGCACAGGGAAAAGGTCGCGACATGCCGATCGAAG
TTTGGATCGATTTCTGGTGATCAAAGTTGCGCTTGCTGCTATACGTTATA
TCTTATCTGAGGACCGATATAATCCGCGCGACCGATGTATCACTCAGTGA
GGTTGACGATTATCCCCTGGCCCTTGAACCAGTTTGCAACATCACGGCTG
ATGTCTTTGTAAGTAAAAGTAATAGTATTTATACTGTTATTTACAAGGCC
CTATGCGGTTTCGGCGAGCAATTATGTATTCCAGCATTCCAGCTCTTGTA
AACGCTCTACTATTATGCTGTTGTGCTGTGGATAGCCCATAGTGAGTACT
CGTAATTATACATCAATGCCGCGTGCCGTCGTGCTAGACTCCATACTCGC
GTACGTTGTGCCAAGAAAAATACAGGACCTATAACAGTCATGTGGTGGGA
TTTAGGTATCGGAGAATGCCCTTTGTCCTTTGTCCTTTTCGCCAGAGAGA
CGGTCAAGCGGTGACTTGTTCACCTTGTTTGTCAAGACAGCTTCCGATTT
TTGATTTTTCGATACCCGTGCCACGTATCATACGAGTACGCGCCGCGTGA
CGGGCACGATTGGCTGCTGGTGCGTATCAGGTATGCAGCATCTTTTGTGT
CGGACGTGGAACTCTTAAGAAGCTATGGAACGCGCTTCTTCACAGAACAC
TATAAATATCACTCTTGAGTGGTCATTTGTTTGGACACGTGTCATGTATT
TTGGAATCCTGAAGAAGTAGTTTGTCCCCAGCTGACGCTATTAATATGGA
ATATATGGTTGATCGGCTTTTTAGAGTCTCGAGAACGCTACGTAAGCGCG
GATACTGTCACAGATCTAATATGTCTATCATACGAGGTATCAAAGTAGAT
CTAGTAGATCTAGTAGCAGAGAGTGCCAGGACATGTGGAAAAAGCTGTCC
AGGCAGCGGTCAGTATCCCAATCTTCACTGCCATAAGCAAGCATCCGTCT
TAACGTCTTAACGCTGTTTCCTATCCCCTATCCTCTCGTTCCCTTGCCTT
GCTCCCCCTCCCCCGCCCACCCCCGGCACATATGATATAGTGCGCATGTG
GCTGGGTCGTATCGCGGGGTCACTTGTGTTGGGCGTTATCCTTGGTGGAG
CCGCTGCCTACTACGCCCTTCCGCGTATGATGACGTCGGCTTCCGTGGCG
TGCAACCCTAACGACGCTACCTCACCCTGGTGGAACACCCCGGAGTCGTC
TACCGGAGGAACCGAGCAGAGCTTCGGAGATCGTCTGAACAAGGCTCTTT
TCGCGGCGAGGGCTGGAGAGGCGGCTGCGCAGCAGGGTTTGCTGGTACGT
TTGGAGTTGAATGGGTGA back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig9268:85..3402- >mRNA_D-dudresnayi_contig9268.28058.1 ID=mRNA_D-dudresnayi_contig9268.28058.1|Name=mRNA_D-dudresnayi_contig9268.28058.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2718bp|location=Sequence derived from alignment at D-dudresnayi_contig9268:85..3402- (Desmarestia dudresnayi DdudBR16 monoicous) ATGCAGATCACCATCGACTCACAAAGCTTCGTGAATCTCGGGCAGTTGAT GGGCAGCAGCCTTGGCCATGGAATCTCGGGAAGCTCCCCTGCTGCGGCGG TACCTCCCGGGTTGTCGCCGGCGTGTACGACCCCTGCAGGCAATAATCTG GGCGCTTCCTCTTTTCTTTCCGACAGCTCAGACGGTCTGAGGGACTTCGA TCACATCTTCCACCCTGCGAAATCTACCTCGAGTGCCTGGTCGGGACACG GTGTTTGTTCTGACAACGAGGAGGCTGCTGACGAGCAAGACGAGGATGAC AACGACAGCGTTCTCCCTGCGTTGCCTTCCCGCAGCCCCACTCCCGGATC TCCCGCAAGCTCAGAGTTGAACTCGAACAGATGCCCTCTCAACGCTTCGG AAGCTGGTTGGGCGGACGATCTAAGCAATGCTGCGTCCGCGGTTGGAGGG AGCAGCAACATGAACGCCTGTGTCCTCGATGCCTCTGCCGATGGCCAATG CCCGAGGGGGGCTCTTGGTCTTGGTGCGGGTGTGCTCACTGGTAAGCCTG CCTGCGTTGAGAAACAGGTCGTTACATCGGACATGAAAAACATCACGGAA GACCGTCATGTTCAACCTTCCGCCTCTATTACTAGCGCCCCGTCCTCCTC CTCCTCCCCGTCGACGCCACTGACTGTAGTGGATGAGGGTGCCACGGCGG GCGAAGCACCGGCATGTTTGTCTGCCTCGCTTCTCCGCGAGTCCTGGCTG CACGTTAACCAGGATGGTATCGACCAGGGTGACGATAGTGCTGTTATTGA CAGTGAGGGTGTTGCGGAAACTAAGGCACAGCAACAGCAGGCAGAAGCGG GAACCGCTGGGGGCTGCGCCTGCGGCGAGAGGGCCCGACGGATCGGCGCT GTCCTCGGTGAGTGCGGCTCTTGCTTTGTTAGCGGTGCGGCCAAGGCTGC GGCGCTCTTCCGACCCCGGGTGCAGCAGCTTGTTGAGCGCGCCAAGGTCC CGGTTCAGGCTGGTGCCGATGCGTATCAGAGGGGACAACAAGCCTTCGTG GACACTGTGGATAACGTGCCGCAGGCCCCAGATGCAGATCACCATCGACT CACAAAGCTTCGTGAATCTCGGGCAGTTGATGGGCAGCAGCCTTGGCCAT GGAATCTCGGGAAGCTCCCCTGCTGCGGCGGTACCTCCCGGGTTGTCGCC GGCGTGTACGACCCCTGCAGGCAATAATCTGGGCGCTTCCTCTTTTCTTT CCGACAGCTCAGACGGTCTGAGGGACTTCGATCACATCTTCCACCCTGCG AAATCTACCTCGAGTGCCTGGTCGGGACACGGTGTTTGTTCTGACAACGA GGAGGCTGCTGACGAGCAAGACGAGGATGACAACGACAGCGTTCTCCCTG CGTTGCCTTCCCGCAGCCCCACTCCCGGATCTCCCGCAAGCTCAGAGTTG AACTCGAACAGATGCCCTCTCAACGCTTCGGAAGCTGGTTGGGCGGACGA TCTAAGCAATGCTGCGTCCGCGGTTGGAGGGAGCAGCAACATGAACGCCT GTGTCCTCGATGCCTCTGCCGATGGCCAATGCCCGAGGGGGGCTCTTGGT CTTGGTGCGGGTGTGCTCACTGGTAAGCCTGCCTGCGTTGAGAAACAGGT CGTTACATCGGACATGAAAAACATCACGGAAGACCGTCATGTTCAACCTT CCGCCTCTATTACTAGCGCCCCGTCCTCCTCCTCCTCCCCGTCGACGCCA CTGACTGTAGTGGATGAGGGTGCCACGGCGGGCGAAGCACCGGCATGTTT GTCTGCCTCGCTTCTCCGCGAGTCCTGGCTGCACGTTAACCAGGATGGTA TCGACCAGGGTGACGATAGTGCTGTTATTGACAGTGAGGGTGTTGCGGAA ACTAAGGCACAGCAACAGCAGGCAGAAGCGGGAACCGCTGGGGGCTGCGC CTGCGGCGAGAGGGCCCGACGGATCGGCGCTGTCCTCGGTGAGTGCGGCT CTTGCTTTGTTAGCGGTGCGGCCAAGGCTGCGGCGCTCTTCCGACCCCGG GTGCAGCAGCTTGTTGAGCGCGCCAAGGTCCCGGTTCAGGCTGGTGCCGA TGCGTATCAGAGGGGACAACAAGCCTTCGTGGACACTGTGGATAACGTGC CGCAGGCCCCAGTGCGCATGTGGCTGGGTCGTATCGCGGGGTCACTTGTG TTGGGCGTTATCCTTGGTGGAGCCGCTGCCTACTACGCCCTTCCGCGTAT GATGACGTCGGCTTCCGTGGCGTGCAACCCTAACGACGCTACCTCACCCT GGTGGAACACCCCGGAGTCGTCTACCGGAGGAACCGAGCAGAGCTTCGGA GATCGTCTGAACAAGGCTCTTTTCGCGGCGAGGGCTGGAGAGGCGGCTGC GCAGCAGGGTTTGCTGGTACGTTTGGAGTTGAATGGGTGATGCGCATGTG GCTGGGTCGTATCGCGGGGTCACTTGTGTTGGGCGTTATCCTTGGTGGAG CCGCTGCCTACTACGCCCTTCCGCGTATGATGACGTCGGCTTCCGTGGCG TGCAACCCTAACGACGCTACCTCACCCTGGTGGAACACCCCGGAGTCGTC TACCGGAGGAACCGAGCAGAGCTTCGGAGATCGTCTGAACAAGGCTCTTT TCGCGGCGAGGGCTGGAGAGGCGGCTGCGCAGCAGGGTTTGCTGGTACGT TTGGAGTTGAATGGGTGA back to top
|