mRNA_D-dudresnayi_contig10717.788.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous
Overview
Homology
BLAST of mRNA_D-dudresnayi_contig10717.788.1 vs. uniprot
Match: D8LI35_ECTSI (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI35_ECTSI) HSP 1 Score: 198 bits (503), Expect = 2.690e-59 Identity = 96/107 (89.72%), Postives = 105/107 (98.13%), Query Frame = 1 Query: 52 MDFGDPSDDEADAGKVRVKFVTKIPSIRVTDTPIAVPETLQRYGLSEVVNHLLGLDPPTPFDMLVMGQFLRGSLRSVMQRNALSGESVLEVEYLPAVRQPTEAEHAD 372 MDFG+PSDDEADAGKVRVKFVTK+PSIRVT+TP+AVPE+LQRYGLSEVVNHLLG DPPTPFDMLVMG+FLR SLRSVMQR+ALSGE+VLEVEYLPA+RQPTEAEHAD Sbjct: 1 MDFGEPSDDEADAGKVRVKFVTKVPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRHALSGEAVLEVEYLPALRQPTEAEHAD 107
BLAST of mRNA_D-dudresnayi_contig10717.788.1 vs. uniprot
Match: A0A836CE58_9STRA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE58_9STRA) HSP 1 Score: 118 bits (296), Expect = 7.090e-29 Identity = 68/112 (60.71%), Postives = 80/112 (71.43%), Query Frame = 1 Query: 94 KVRVKFVTKIPSIRVTDTPIAVPETLQRYGLSEVVNHLLGLDP-------------------PTPFDMLVMGQFLRGSLRSVMQRNALSGESVLEVEYLPAVRQPTEAEHAD 372 +VRVKFVTK+ SIRVTD PIAVPETL RYGLSEVVNHLLGL+ P PFD+L+ G+FLR SL M+ +A+SGE+VLE+EYLPA+RQPTE E AD Sbjct: 29 QVRVKFVTKLASIRVTDLPIAVPETLGRYGLSEVVNHLLGLNADTSAAAAAPHDAAPPSSKAPIPFDILIDGRFLRTSLARYMRAHAVSGETVLELEYLPALRQPTE-ESAD 139
BLAST of mRNA_D-dudresnayi_contig10717.788.1 vs. uniprot
Match: A0A7S4DK03_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DK03_HETAK) HSP 1 Score: 101 bits (252), Expect = 1.650e-25 Identity = 59/102 (57.84%), Postives = 72/102 (70.59%), Query Frame = 1 Query: 70 SDDEADAGKVRVKFVTKIPSIRVTDTPIAVPETLQRYGLSEVVNHLLGLDPPTPFDMLVMGQFLRGSLRSVMQRN----ALSGESVLEVEYLPAVRQPTEAE 363 SDDE + KVRVKFVTKI SIRVT+ PIAVP +L RYGLSEVVNHLL + P P + LV G +G LR ++R+ LSGE+V+E+EY PA P +AE Sbjct: 3 SDDETE--KVRVKFVTKIASIRVTEVPIAVPTSLGRYGLSEVVNHLLAREEPIPLEFLVEG---KGLLRVPLERHLTAAGLSGETVVELEYFPAAPPPEQAE 99
BLAST of mRNA_D-dudresnayi_contig10717.788.1 vs. uniprot
Match: A0A7S2UZW3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZW3_9STRA) HSP 1 Score: 103 bits (257), Expect = 2.280e-25 Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = 1 Query: 73 DDEADAGKVRVKFVTKIPSIRVTDTPIAVPETLQRYGLSEVVNHLLGLDPPTPFDMLVM-----GQFLRGSLRSVMQRNALSGESVLEVEYLPAVRQPTEAEH 366 +DE + KVRV+FVTK+PS++VT+ PIAVP L RYGLSEVVNHLLG++ PFD LV LR L+ MQ ++SGESV+ +EY A + P EA H Sbjct: 3 NDEEEGEKVRVRFVTKVPSLKVTEMPIAVPIKLARYGLSEVVNHLLGVEKHVPFDFLVQDPRSRASLLRTPLKRHMQTWSISGESVVTLEYFEAAKPPQEAPH 105
BLAST of mRNA_D-dudresnayi_contig10717.788.1 vs. uniprot
Match: A0A7S0KMA7_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KMA7_MICPS) HSP 1 Score: 105 bits (263), Expect = 9.620e-25 Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 1 Query: 94 KVRVKFVTKIPS-IRVTDTPIAVPETLQRYGLSEVVNHLLGLDPPTPFDMLVMGQFLRGSLRSVMQRNALSGESVLEVEYLPAVRQPTE 357 ++ KFVT++P R+ TPIAVP L RYGLSEV+NHLL LDPP PFD LV G+ +R SL ++ R A+S ES LEVEY+PAV P+E Sbjct: 7 QISCKFVTRLPEQYRIAPTPIAVPGKLTRYGLSEVINHLLNLDPPKPFDFLVQGELVRTSLEKLVVRKAISAESALEVEYIPAVAPPSE 95
BLAST of mRNA_D-dudresnayi_contig10717.788.1 vs. uniprot
Match: C1EJB9_MICCC (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EJB9_MICCC) HSP 1 Score: 105 bits (262), Expect = 3.250e-24 Identity = 53/93 (56.99%), Postives = 67/93 (72.04%), Query Frame = 1 Query: 82 ADAGKVRVKFVTKIPS-IRVTDTPIAVPETLQRYGLSEVVNHLLGLDPPTPFDMLVMGQFLRGSLRSVMQRNALSGESVLEVEYLPAVRQPTE 357 A+ ++ KFVT++P R+ TPIAVP L RYGLSEV+NHLL LDPP PFD LV G+ +R SL ++ R A+S ES LEVEY+PAV P+E Sbjct: 3 AEEVQISCKFVTRLPEQYRIAPTPIAVPGKLTRYGLSEVINHLLNLDPPKPFDFLVQGELVRTSLEKLVVRKAISVESALEVEYIPAVAPPSE 95
BLAST of mRNA_D-dudresnayi_contig10717.788.1 vs. uniprot
Match: A0A2J7ZLP8_9CHLO (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZLP8_9CHLO) HSP 1 Score: 104 bits (260), Expect = 6.470e-24 Identity = 52/91 (57.14%), Postives = 70/91 (76.92%), Query Frame = 1 Query: 82 ADAGKVRVKFVTKIP-SIRVTDTPIAVPETLQRYGLSEVVNHLLGLDPPTPFDMLVMGQFLRGSLRSVMQRNALSGESVLEVEYLPAVRQP 351 A+ +V VKFVTK+P S+RV +TP+AVP TL+RYGLS+++NHLL LDPP PFD LV G+ +R SL + + + LS ES L++EY+PAV P Sbjct: 2 AEETQVLVKFVTKLPISLRVPETPVAVPSTLRRYGLSQIINHLLALDPPRPFDFLVNGELVRCSLEAHLLGHNLSAESTLQLEYVPAVVPP 92
BLAST of mRNA_D-dudresnayi_contig10717.788.1 vs. uniprot
Match: A0A836BU45_9CHLO (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BU45_9CHLO) HSP 1 Score: 104 bits (259), Expect = 9.930e-24 Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1 Query: 82 ADAGKVRVKFVTKIPS-IRVTDTPIAVPETLQRYGLSEVVNHLLGLDPPTPFDMLVMGQFLRGSLRSVMQRNALSGESVLEVEYLPAVRQP 351 A+ +V VKF+TK+P +RV +TP+AVP +L+RYGLS+V+NHLL LD P PFD LV GQ LR SL + + LS ES LEVEY+PAV P Sbjct: 3 AEESQVLVKFITKLPPHLRVPETPVAVPASLRRYGLSQVINHLLALDAPRPFDFLVSGQLLRSSLEAHLLLAGLSAESTLEVEYVPAVVPP 93
BLAST of mRNA_D-dudresnayi_contig10717.788.1 vs. uniprot
Match: A0A7S0GRJ0_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GRJ0_MICPS) HSP 1 Score: 101 bits (251), Expect = 1.830e-23 Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = 1 Query: 94 KVRVKFVTKIPS-IRVTDTPIAVPETLQRYGLSEVVNHLLGLDPPTPFDMLVMGQFLRGSLRSVMQRNALSGESVLEVEYLPAVRQPTE 357 ++ +FVT++P R+ TP+AVP L RYGLSEVVNHLL LDPP PFD LV G+ +R SL+ ++ R A+S E L+VEY+PAV P+E Sbjct: 9 QITCRFVTRLPEKFRIAPTPLAVPGKLTRYGLSEVVNHLLALDPPKPFDFLVDGELVRTSLQKLLLRKAISAEKTLDVEYIPAVGPPSE 97
BLAST of mRNA_D-dudresnayi_contig10717.788.1 vs. uniprot
Match: WDR12_CHLRE (Ribosome biogenesis protein WDR12 homolog n=4 Tax=Chlamydomonas TaxID=3052 RepID=WDR12_CHLRE) HSP 1 Score: 103 bits (256), Expect = 2.050e-23 Identity = 51/91 (56.04%), Postives = 68/91 (74.73%), Query Frame = 1 Query: 82 ADAGKVRVKFVTKIPS-IRVTDTPIAVPETLQRYGLSEVVNHLLGLDPPTPFDMLVMGQFLRGSLRSVMQRNALSGESVLEVEYLPAVRQP 351 A+ +V VKFVTK+P+ +RV +TP+AVP L+RYGLS+++NHLL LDPP PFD L+ G+ +R SL + + LS ES LEVEY+PAV P Sbjct: 2 AEETQVLVKFVTKLPAHLRVPETPVAVPSDLKRYGLSQIINHLLALDPPRPFDFLIDGELVRKSLEQHLLAHNLSAESTLEVEYVPAVVPP 92 The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10717.788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig10717.788.1 >prot_D-dudresnayi_contig10717.788.1 ID=prot_D-dudresnayi_contig10717.788.1|Name=mRNA_D-dudresnayi_contig10717.788.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=107bp MDFGDPSDDEADAGKVRVKFVTKIPSIRVTDTPIAVPETLQRYGLSEVVNback to top mRNA from alignment at D-dudresnayi_contig10717:211..1788- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dudresnayi_contig10717.788.1 ID=mRNA_D-dudresnayi_contig10717.788.1|Name=mRNA_D-dudresnayi_contig10717.788.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1578bp|location=Sequence derived from alignment at D-dudresnayi_contig10717:211..1788- (Desmarestia dudresnayi DdudBR16 monoicous)back to top Coding sequence (CDS) from alignment at D-dudresnayi_contig10717:211..1788- >mRNA_D-dudresnayi_contig10717.788.1 ID=mRNA_D-dudresnayi_contig10717.788.1|Name=mRNA_D-dudresnayi_contig10717.788.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at D-dudresnayi_contig10717:211..1788- (Desmarestia dudresnayi DdudBR16 monoicous)back to top |