mRNA_D-dudresnayi_contig10711.785.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10711.785.1
Unique NamemRNA_D-dudresnayi_contig10711.785.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10711.785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10711contigD-dudresnayi_contig10711:5490..6247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size758
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10711.785.1prot_D-dudresnayi_contig10711.785.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10711 5494..5910 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927580.8037896-UTR-D-dudresnayi_contig10711:5489..54931622927580.8037896-UTR-D-dudresnayi_contig10711:5489..5493Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10711 5490..5493 +
1690556815.42874-UTR-D-dudresnayi_contig10711:5489..54931690556815.42874-UTR-D-dudresnayi_contig10711:5489..5493Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10711 5490..5493 +
1622927580.8324528-UTR-D-dudresnayi_contig10711:5910..62471622927580.8324528-UTR-D-dudresnayi_contig10711:5910..6247Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10711 5911..6247 +
1690556815.4440038-UTR-D-dudresnayi_contig10711:5910..62471690556815.4440038-UTR-D-dudresnayi_contig10711:5910..6247Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10711 5911..6247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927580.8190706-CDS-D-dudresnayi_contig10711:5493..59101622927580.8190706-CDS-D-dudresnayi_contig10711:5493..5910Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10711 5494..5910 +
1690556815.435924-CDS-D-dudresnayi_contig10711:5493..59101690556815.435924-CDS-D-dudresnayi_contig10711:5493..5910Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10711 5494..5910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10711.785.1

>prot_D-dudresnayi_contig10711.785.1 ID=prot_D-dudresnayi_contig10711.785.1|Name=mRNA_D-dudresnayi_contig10711.785.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=139bp
MTINFAWRATQLIGTIPSKNNHYLGFARVATLLIGTIPSTNNRRVGSKPP
TYRLVPDLVEALYINGPRLLYAWTQESLMAAACRKLTRCASTEDRINRTR
YYCAPATQTYNQGTHCTVYRLPASSLESYACIQTPPIS*
back to top

mRNA from alignment at D-dudresnayi_contig10711:5490..6247+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10711.785.1 ID=mRNA_D-dudresnayi_contig10711.785.1|Name=mRNA_D-dudresnayi_contig10711.785.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=758bp|location=Sequence derived from alignment at D-dudresnayi_contig10711:5490..6247+ (Desmarestia dudresnayi DdudBR16 monoicous)
AATAATGACAATAAATTTCGCGTGGCGAGCCACACAATTGATTGGTACGA
TCCCATCCAAAAACAACCACTATCTAGGCTTCGCGCGCGTAGCAACGCTT
TTGATTGGTACCATCCCATCCACAAATAACCGCCGTGTAGGCAGCAAACC
CCCGACATATCGTCTGGTCCCCGACCTTGTAGAGGCACTATACATCAACG
GTCCACGACTCTTGTATGCGTGGACACAGGAGAGCCTCATGGCTGCAGCT
TGTAGGAAGTTGACCCGCTGTGCATCAACGGAAGACAGAATTAATCGAAC
AAGATATTACTGTGCACCAGCAACGCAAACGTACAACCAAGGCACACACT
GCACGGTATATCGACTCCCTGCCTCATCGCTTGAGTCTTACGCGTGCATC
CAAACACCACCCATCTCGTGATACATAAATAAATAAAAAACGAACGCTCT
ATCTGCCTCTACCTTTCTGTACATCAAATCAATGCTGCACTATCATATGT
GCCACCAAGAGGGTAACACATACATACGTACCTGACGCACAGCTAGGTAC
ACATAAAAACTGACTTGGAACGTGCTCGATGCATATATAGTACAGCGTGA
AACCAACCCGCTTCTGTATTTACACCACTTTACACCACGTATATGATACC
CTTATATAGTTACTCCACTTCCATGGCACCCCACCCCATTTGCGGCATCG
CTGGGACAGTCGGCACCGTCCCGACATGGCCCTGCTGCTGCTGCATCACA
GCTCCACC
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10711:5490..6247+

>mRNA_D-dudresnayi_contig10711.785.1 ID=mRNA_D-dudresnayi_contig10711.785.1|Name=mRNA_D-dudresnayi_contig10711.785.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at D-dudresnayi_contig10711:5490..6247+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACAATAAATTTCGCGTGGCGAGCCACACAATTGATTGGTACGATCCC
ATCCAAAAACAACCACTATCTAGGCTTCGCGCGCGTAGCAACGCTTTTGA
TTGGTACCATCCCATCCACAAATAACCGCCGTGTAGGCAGCAAACCCCCG
ACATATCGTCTGGTCCCCGACCTTGTAGAGGCACTATACATCAACGGTCC
ACGACTCTTGTATGCGTGGACACAGGAGAGCCTCATGGCTGCAGCTTGTA
GGAAGTTGACCCGCTGTGCATCAACGGAAGACAGAATTAATCGAACAAGA
TATTACTGTGCACCAGCAACGCAAACGTACAACCAAGGCACACACTGCAC
GGTATATCGACTCCCTGCCTCATCGCTTGAGTCTTACGCGTGCATCCAAA
CACCACCCATCTCGTGAATGACAATAAATTTCGCGTGGCGAGCCACACAA
TTGATTGGTACGATCCCATCCAAAAACAACCACTATCTAGGCTTCGCGCG
CGTAGCAACGCTTTTGATTGGTACCATCCCATCCACAAATAACCGCCGTG
TAGGCAGCAAACCCCCGACATATCGTCTGGTCCCCGACCTTGTAGAGGCA
CTATACATCAACGGTCCACGACTCTTGTATGCGTGGACACAGGAGAGCCT
CATGGCTGCAGCTTGTAGGAAGTTGACCCGCTGTGCATCAACGGAAGACA
GAATTAATCGAACAAGATATTACTGTGCACCAGCAACGCAAACGTACAAC
CAAGGCACACACTGCACGGTATATCGACTCCCTGCCTCATCGCTTGAGTC
TTACGCGTGCATCCAAACACCACCCATCTCGTGA
back to top