mRNA_D-dudresnayi_contig10704.781.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10704.781.1
Unique NamemRNA_D-dudresnayi_contig10704.781.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10704.781.1 vs. uniprot
Match: A0A6H5KRD8_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD8_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.690e-9
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = -2 
Query:   11 ESVRGLGRIFGIGTHPVVAEAQARAEALVHGRGG 112
            + VRGLGRIFG+GTHPVVAEAQARAEA+VHGRGG
Sbjct:  193 QGVRGLGRIFGVGTHPVVAEAQARAEAMVHGRGG 226
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10704.781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRD8_9PHAE1.690e-988.24BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10704contigD-dudresnayi_contig10704:8100..8599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size500
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10704.781.1prot_D-dudresnayi_contig10704.781.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10704 8167..8589 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927580.5209932-UTR-D-dudresnayi_contig10704:8099..81661622927580.5209932-UTR-D-dudresnayi_contig10704:8099..8166Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10704 8100..8166 +
1690556815.2833545-UTR-D-dudresnayi_contig10704:8099..81661690556815.2833545-UTR-D-dudresnayi_contig10704:8099..8166Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10704 8100..8166 +
1622927580.5514224-UTR-D-dudresnayi_contig10704:8589..85991622927580.5514224-UTR-D-dudresnayi_contig10704:8589..8599Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10704 8590..8599 +
1690556815.2998981-UTR-D-dudresnayi_contig10704:8589..85991690556815.2998981-UTR-D-dudresnayi_contig10704:8589..8599Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10704 8590..8599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927580.5364282-CDS-D-dudresnayi_contig10704:8166..85891622927580.5364282-CDS-D-dudresnayi_contig10704:8166..8589Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10704 8167..8589 +
1690556815.2919285-CDS-D-dudresnayi_contig10704:8166..85891690556815.2919285-CDS-D-dudresnayi_contig10704:8166..8589Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10704 8167..8589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10704.781.1

>prot_D-dudresnayi_contig10704.781.1 ID=prot_D-dudresnayi_contig10704.781.1|Name=mRNA_D-dudresnayi_contig10704.781.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=141bp
MRPDTKYSAKATNGLGLRIVAPRPPILISMVVVLFLLLVRTEIILLPVVV
VVLFHGLHLARIEVVLALATAELLVAAVVVAAACVVVVRPVLEALHAAPA
AVRVHPGFAQERLHAPPKARHRTNTRGTSPAHPDHVTCGA*
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mRNA from alignment at D-dudresnayi_contig10704:8100..8599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10704.781.1 ID=mRNA_D-dudresnayi_contig10704.781.1|Name=mRNA_D-dudresnayi_contig10704.781.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=500bp|location=Sequence derived from alignment at D-dudresnayi_contig10704:8100..8599+ (Desmarestia dudresnayi DdudBR16 monoicous)
CGCCCGACTTCCCCCCTCGCCCGTGCACCAAAGCTTCCGCACGAGCCTGC
GCCTCTGCCACAACAGGATGCGTCCCGATACCAAATATTCTGCCAAGGCC
ACGAACGGACTCGGCCTGCGGATCGTCGCTCCCCGCCCCCCCATCCTCAT
TAGCATGGTAGTCGTGCTCTTCCTCCTCCTCGTCCGAACAGAAATCATCC
TCTTGCCTGTTGTTGTGGTTGTGCTGTTCCATGGCCTCCATCTTGCAAGG
ATCGAGGTGGTCCTTGCTCTCGCCACCGCCGAACTGCTTGTTGCTGCTGT
CGTTGTTGCTGCTGCCTGTGTTGTTGTGGTACGACCCGTCCTTGAAGCTC
TCCACGCCGCTCCCGCTGCTGTCAGGGTACATCCCGGCTTCGCCCAGGAA
CGATTGCATGCTCCCCCCAAGGCCCGTCATCGAACCAATACCCGGGGCAC
TTCGCCCGCCCACCCCGACCATGTTACCTGCGGGGCTTGAAACGCCCCCC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10704:8100..8599+

>mRNA_D-dudresnayi_contig10704.781.1 ID=mRNA_D-dudresnayi_contig10704.781.1|Name=mRNA_D-dudresnayi_contig10704.781.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at D-dudresnayi_contig10704:8100..8599+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCGTCCCGATACCAAATATTCTGCCAAGGCCACGAACGGACTCGGCCT
GCGGATCGTCGCTCCCCGCCCCCCCATCCTCATTAGCATGGTAGTCGTGC
TCTTCCTCCTCCTCGTCCGAACAGAAATCATCCTCTTGCCTGTTGTTGTG
GTTGTGCTGTTCCATGGCCTCCATCTTGCAAGGATCGAGGTGGTCCTTGC
TCTCGCCACCGCCGAACTGCTTGTTGCTGCTGTCGTTGTTGCTGCTGCCT
GTGTTGTTGTGGTACGACCCGTCCTTGAAGCTCTCCACGCCGCTCCCGCT
GCTGTCAGGGTACATCCCGGCTTCGCCCAGGAACGATTGCATGCTCCCCC
CAAGGCCCGTCATCGAACCAATACCCGGGGCACTTCGCCCGCCCACCCCG
ACCATGTTACCTGCGGGGCTTGAATGCGTCCCGATACCAAATATTCTGCC
AAGGCCACGAACGGACTCGGCCTGCGGATCGTCGCTCCCCGCCCCCCCAT
CCTCATTAGCATGGTAGTCGTGCTCTTCCTCCTCCTCGTCCGAACAGAAA
TCATCCTCTTGCCTGTTGTTGTGGTTGTGCTGTTCCATGGCCTCCATCTT
GCAAGGATCGAGGTGGTCCTTGCTCTCGCCACCGCCGAACTGCTTGTTGC
TGCTGTCGTTGTTGCTGCTGCCTGTGTTGTTGTGGTACGACCCGTCCTTG
AAGCTCTCCACGCCGCTCCCGCTGCTGTCAGGGTACATCCCGGCTTCGCC
CAGGAACGATTGCATGCTCCCCCCAAGGCCCGTCATCGAACCAATACCCG
GGGCACTTCGCCCGCCCACCCCGACCATGTTACCTGCGGGGCTTGA
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