mRNA_D-dudresnayi_contig10703.777.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10703.777.1
Unique NamemRNA_D-dudresnayi_contig10703.777.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10703.777.1 vs. uniprot
Match: A0A6H5JRL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL1_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.020e-11
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 2 
Query:  269 QHPLMTLRAGGLPTVYPVEAIRRHVHMWHVC-RTRNLASSDEWLCGRQSTPAVRGGRHVWTHKYK-AGSGSEAA-DTYQLNEHHHGIARDSFL 538
            +HP ++L+  G P VYPV+AIRR VHM+H C +  ++ SS   +CG    P   G   VW H+++ A  GS    D Y LNE HH   +D+F+
Sbjct:  312 RHPTLSLQGRGRPKVYPVQAIRRQVHMYHQCPQHSDVGSSTSQICGESQGPYSGGRDRVWHHRFRLALPGSRNGYDRYLLNEVHHSTNQDTFV 404
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BLAST of mRNA_D-dudresnayi_contig10703.777.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 4.590e-9
Identity = 41/101 (40.59%), Postives = 54/101 (53.47%), Query Frame = 2 
Query:  272 HPLMTLRAGG--LPTVYPVEAIRRHVHMWHVC-------RTRNLASSDEWLCGRQSTPAVRGGRHVWTHKY---KAGSGSEAADTYQLNEHHHGIARDSFL 538
            HP   L+ GG  +P+VYPV+AIRRHVHM+H+C       R  N ++  E  CG +     +GG +VW H Y    A   S   D Y LNEH  G  +D  +
Sbjct:  903 HPTYWLQGGGNRVPSVYPVDAIRRHVHMYHLCPVSHFEPRAANTSALAE-TCGLRDDDTGKGG-NVWKHHYILAAAKPPSGQRDAYMLNEHWRGAFQDGVV 1001
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BLAST of mRNA_D-dudresnayi_contig10703.777.1 vs. uniprot
Match: A0A6H5KMA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMA2_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.040e-6
Identity = 38/100 (38.00%), Postives = 48/100 (48.00%), Query Frame = 2 
Query:  269 QHPLMTLRAG--GLPTVYPVEAIRRHVHMWHVCRTRNLASSDEWL-----CGRQSTPAVRGGRHVWTHKYKAGSGSEAA--DTYQLNEHHHGIARDSFLD 541
            QHP   L+ G   +P+VYP+EAIRRHV M+H C   + A+          CG       RGG  VW H Y+    + +   D Y L EH     R SF D
Sbjct:  318 QHPTYWLQRGVKQVPSVYPIEAIRRHVMMYHHCPGSSFATGVSHTPAPDSCGLHDDHRARGGGKVWKHHYRLAPANPSGPRDAYILKEHW----RSSFQD 413
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BLAST of mRNA_D-dudresnayi_contig10703.777.1 vs. uniprot
Match: A0A6H5K4J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.050e-6
Identity = 35/94 (37.23%), Postives = 47/94 (50.00%), Query Frame = 2 
Query:  269 QHPLMTLRAGGL--PTVYPVEAIRRHVHMWHVCRTRNLA------SSDEWLCGRQSTPAVRG-GRHVWTHKYKAGSGSEAA-----DTYQLNEH 508
            +HP   L+ G    P+V+PVEAIRRHVHM+H+C T +        +S+   CG +     +G G  VW H Y   +          D Y LNEH
Sbjct:  331 KHPSYWLQGGAATTPSVFPVEAIRRHVHMYHLCPTSSFEGGRIDDTSESQSCGLRMDDMAKGSGAKVWKHHYNLATAPRDRRHGHRDAYLLNEH 424
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BLAST of mRNA_D-dudresnayi_contig10703.777.1 vs. uniprot
Match: D7FZ46_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ46_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.890e-5
Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 2 
Query:  269 QHPLMTLRAG--GLPTVYPVEAIRRHVHMWHVCRTRNLASSDEWL-----CGRQSTPAVRGGRHVWTHKYK 460
            QHP   L+ G   +P+VYP+EAIRRHV M+H C   + A+          CG  +    RGG  VW H Y+
Sbjct:  639 QHPTYWLQGGVKQVPSVYPIEAIRRHVMMYHHCPASSFATGVSHTPAPDSCGLHADHRARGGGKVWKHHYR 709
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10703.777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JRL1_9PHAE1.020e-1141.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K953_9PHAE4.590e-940.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMA2_9PHAE1.040e-638.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4J5_9PHAE1.050e-637.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ46_ECTSI1.890e-540.85Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10703contigD-dudresnayi_contig10703:486..1644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size689
Cds size468
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10703.777.1prot_D-dudresnayi_contig10703.777.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10703 1177..1644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927580.2060885-UTR-D-dudresnayi_contig10703:485..6341622927580.2060885-UTR-D-dudresnayi_contig10703:485..634Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10703 486..634 -
1690556815.1506722-UTR-D-dudresnayi_contig10703:485..6341690556815.1506722-UTR-D-dudresnayi_contig10703:485..634Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10703 486..634 -
1622927580.2197285-UTR-D-dudresnayi_contig10703:1105..11761622927580.2197285-UTR-D-dudresnayi_contig10703:1105..1176Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10703 1106..1176 -
1690556815.1589406-UTR-D-dudresnayi_contig10703:1105..11761690556815.1589406-UTR-D-dudresnayi_contig10703:1105..1176Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10703 1106..1176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927580.2302299-CDS-D-dudresnayi_contig10703:1176..16441622927580.2302299-CDS-D-dudresnayi_contig10703:1176..1644Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10703 1177..1644 -
1690556815.1678936-CDS-D-dudresnayi_contig10703:1176..16441690556815.1678936-CDS-D-dudresnayi_contig10703:1176..1644Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10703 1177..1644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10703.777.1

>prot_D-dudresnayi_contig10703.777.1 ID=prot_D-dudresnayi_contig10703.777.1|Name=mRNA_D-dudresnayi_contig10703.777.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=156bp
NGPTKNAWALGPGAGEDVEIYRDRTARGQAVLNAHRDLTIGKILYFCRHT
ANLGHGDQHSGATGVVSTFAVVYEYKGAGAGNSRRPDDRTAPSHDVEGGR
PPDSLPCRGYPSTRPHVARVSNAEFGLLRRMALRQAVDAGSEGRSARVDS
QVQGR*
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mRNA from alignment at D-dudresnayi_contig10703:486..1644-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10703.777.1 ID=mRNA_D-dudresnayi_contig10703.777.1|Name=mRNA_D-dudresnayi_contig10703.777.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1159bp|location=Sequence derived from alignment at D-dudresnayi_contig10703:486..1644- (Desmarestia dudresnayi DdudBR16 monoicous)
AACGGTCCTACGAAGAACGCGTGGGCTTTGGGGCCGGGCGCTGGGGAGGA
TGTCGAGATTTACAGGGATCGCACGGCCCGAGGACAAGCAGTGCTGAACG
CACACCGCGACCTCACCATCGGCAAAATTCTGTACTTCTGCAGACACACG
GCGAACCTAGGTCACGGCGACCAACACAGCGGGGCTACGGGTGTAGTTTC
GACGTTCGCAGTTGTCTACGAGTACAAGGGAGCCGGTGCGGGGAACTCTA
GGCGTCCCGACGACAGGACAGCACCCTCTCATGACGTTGAGGGCGGGAGG
CCTCCCGACAGTTTACCCTGTAGAGGCTATCCGTCGACACGTCCACATGT
GGCACGTGTGTCGAACGCGGAATTTGGCCTCCTCCGACGAATGGCTCTGC
GGCAGGCAGTCGACGCCGGCAGTGAGGGGCGGTCGGCACGTGTGGACTCA
CAAGTACAAGGCCGGTAGCGGATCGGAAGCGGCGGACACGTACCAGCTCA
ACGAACACCACCACGGAATCGCGCGCGATTCCTTCTTAGGTATGCTCATT
TTATGTTAGCGCTGGTCCCCGGTGTTGAGCAGCGGCGAGCCCATCGTAGT
CTGATGGGGCCCGATCCACCGAGTAGGGAATACAACATAGAAAACTAGAT
ACAATTGAACGCAAGCAAGGGGGAAATTCGTCGTGAAATAGTACATCACA
GGAGGATTACATCTGAAAGTCGTTCAGATCACAAACCCTAACTGGTATAC
TTCGAAGTATATGAAGGGAGTTAAGCGTGTTCATTGATAATTTATTATTT
GCGTTTCGTTGCAGTATACCTCATAACGTAAACATGATCCGATTAGTCGT
GACTCCTGTATTGACGGAGCGCGCGGAGATGCCTCCTTTTCGACAAGACT
GCCGGCAGCGGCAACCTTCGACGTGGCCACGGCAGTTAATTTGTTTCGCG
CCACCCTCTCATTGTCAATCTATCACTTGCTCGCGCGCGTGCATTTCGTC
CCGATAATAGATCCTCCGGCGTAGCTGGGACGGCGTTTTTGCTCGCACCA
CCATGAATGTGCCGGCACTGGTGTTCGCGAAAAAATGGGCAGGTCCGCCT
CGCAGCAAAAACGGGCTCCACGGAATCGTCTTTTTGTTAGTGGTGTCGTA
TGTGTGTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10703:486..1644-

>mRNA_D-dudresnayi_contig10703.777.1 ID=mRNA_D-dudresnayi_contig10703.777.1|Name=mRNA_D-dudresnayi_contig10703.777.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at D-dudresnayi_contig10703:486..1644- (Desmarestia dudresnayi DdudBR16 monoicous)
AACGGTCCTACGAAGAACGCGTGGGCTTTGGGGCCGGGCGCTGGGGAGGA
TGTCGAGATTTACAGGGATCGCACGGCCCGAGGACAAGCAGTGCTGAACG
CACACCGCGACCTCACCATCGGCAAAATTCTGTACTTCTGCAGACACACG
GCGAACCTAGGTCACGGCGACCAACACAGCGGGGCTACGGGTGTAGTTTC
GACGTTCGCAGTTGTCTACGAGTACAAGGGAGCCGGTGCGGGGAACTCTA
GGCGTCCCGACGACAGGACAGCACCCTCTCATGACGTTGAGGGCGGGAGG
CCTCCCGACAGTTTACCCTGTAGAGGCTATCCGTCGACACGTCCACATGT
GGCACGTGTGTCGAACGCGGAATTTGGCCTCCTCCGACGAATGGCTCTGC
GGCAGGCAGTCGACGCCGGCAGTGAGGGGCGGTCGGCACGTGTGGACTCA
CAAGTACAAGGCCGGTAGAACGGTCCTACGAAGAACGCGTGGGCTTTGGG
GCCGGGCGCTGGGGAGGATGTCGAGATTTACAGGGATCGCACGGCCCGAG
GACAAGCAGTGCTGAACGCACACCGCGACCTCACCATCGGCAAAATTCTG
TACTTCTGCAGACACACGGCGAACCTAGGTCACGGCGACCAACACAGCGG
GGCTACGGGTGTAGTTTCGACGTTCGCAGTTGTCTACGAGTACAAGGGAG
CCGGTGCGGGGAACTCTAGGCGTCCCGACGACAGGACAGCACCCTCTCAT
GACGTTGAGGGCGGGAGGCCTCCCGACAGTTTACCCTGTAGAGGCTATCC
GTCGACACGTCCACATGTGGCACGTGTGTCGAACGCGGAATTTGGCCTCC
TCCGACGAATGGCTCTGCGGCAGGCAGTCGACGCCGGCAGTGAGGGGCGG
TCGGCACGTGTGGACTCACAAGTACAAGGCCGGTAG
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