mRNA_D-dudresnayi_contig10642.715.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10642.715.1
Unique NamemRNA_D-dudresnayi_contig10642.715.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10642.715.1 vs. uniprot
Match: A0A7S3HCK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCK0_9STRA)

HSP 1 Score: 695 bits (1794), Expect = 5.040e-249
Identity = 333/373 (89.28%), Postives = 356/373 (95.44%), Query Frame = 1 
Query:    1 ECSHAEGEDHELNKQIFPDDLSMQKTKWKSIITVEPKRFFKKYLSQYPADTRAVQPVVVFSHKPLNNFEELSEVCKVIDIAIVPDKPGVCVAVTETYHDVASYHMLHADRQKDGTFALTGNSIDGRTLPDERAYAAARAMLLDFFKYGDKVNAAVDTIPKFNKGRVVVACLVDDSEDLELFLNSIKSAGKAGISKNKFAVFTTSQSVMNDMKNTKIKVVYIPELTNVGTIGDANVGPKLRRYFLQAWLAFACANNLNKVMWQTPGTYWIERPDNIVNAYPAVESLWAYKGRNDKRAAPFFVTFDFFVAVGQERPVHLLHELLLHFDLIIAWDSLDAVAAYRLSENNSRYGTTTYVMAPFKVLHTELMGHDPLK 1119
            ECSHAE ED E+NKQIFPDD+SM+KTKWKSIITVEPKRFFKKYLSQYPADTRAVQPVVVFSHKPL NFEE+SEVCKVIDIAIVPDKPGVCVAVTETYHDVASYHMLHADRQKDGTFALTGNSI+GRTLP E AYAAARA+LLDFFKYG+KVN AV+ +P+F+KGRVVV  LVDD+EDLELFLNS+ SA K GISKNKFAVFTTS++V+NDMKNTKIKV+YIPELTNVGT GD NVGPK+RRYFLQAWLAFACAN+LNKVMWQ+P TYW+ERPDNIVNAYPAVESLWAYKGRNDKR+APFFVTFDFFVAVGQERPVHLLHELLLHFDLI+AWDSLDAVAAYRLSENNSRYGTTTYVMAP KVLHTELM HDPLK
Sbjct:  124 ECSHAEAEDSEVNKQIFPDDMSMKKTKWKSIITVEPKRFFKKYLSQYPADTRAVQPVVVFSHKPLQNFEEMSEVCKVIDIAIVPDKPGVCVAVTETYHDVASYHMLHADRQKDGTFALTGNSIEGRTLPSEPAYAAARALLLDFFKYGEKVNKAVEEVPRFSKGRVVVGVLVDDTEDLELFLNSVASAAKVGISKNKFAVFTTSETVLNDMKNTKIKVIYIPELTNVGTTGDGNVGPKVRRYFLQAWLAFACANSLNKVMWQSPATYWLERPDNIVNAYPAVESLWAYKGRNDKRSAPFFVTFDFFVAVGQERPVHLLHELLLHFDLIVAWDSLDAVAAYRLSENNSRYGTTTYVMAPHKVLHTELMAHDPLK 496
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BLAST of mRNA_D-dudresnayi_contig10642.715.1 vs. uniprot
Match: A0A7S0SUH7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUH7_9STRA)

HSP 1 Score: 281 bits (719), Expect = 9.040e-90
Identity = 129/249 (51.81%), Postives = 186/249 (74.70%), Query Frame = 1 
Query:  508 CLVDDSEDLELFLNSIKSAGKAGISKNKFAVFTTSQSVMNDMKNTKIKVVYIPELTNVGTIGDANVGPKLRRYFLQAWLAFACANNLNKVMWQTPGTYWIERPDNIVNAYPAVESLWAYKGRNDKRAAPFFVTFDFFVAVGQERPVHLLHELLLHFDLIIAWDSLDAVAAYRLSENNSRYGTTTYVMAPFKVLHTELMGHDPLKVRQAVEAKPGQTEGQDQPYVVVVPKDATDPTRAKQFLIDAGLWLM 1254
            CL+++  +  LF NS+KS   AGISK+KF  FTTS  + +D+K+T +KV+Y+PE+ +VG   D     K+RRYF+QAWLAF+ AN+ N  +WQ+PGTYW++RPDNI+++ P VE LW+YKGR+D R APFFV+FDFF+    ER +HLLHE+LLHFDL++AW SLDA+AAYRLSENNSRYGT+T+++ P+ VLHT L+ +D +K+++A+ +K       D P  +V+P +     + ++ L D+G+WL+
Sbjct:    2 CLIENIHESILFKNSLKSGYNAGISKSKFCAFTTSNDIESDLKSTGVKVIYLPEIKDVGKDLDY----KIRRYFIQAWLAFSVANSQNTYLWQSPGTYWMDRPDNIISSLPIVEVLWSYKGRDDIRGAPFFVSFDFFIPAYAERAIHLLHEILLHFDLVLAWLSLDALAAYRLSENNSRYGTSTHIIPPYTVLHTNLLKYDAIKIKEAIASK-------DHPMAIVIPIEGLAYDQMEKLLKDSGMWLL 239
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BLAST of mRNA_D-dudresnayi_contig10642.715.1 vs. uniprot
Match: A0A7S0SWB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWB4_9STRA)

HSP 1 Score: 150 bits (378), Expect = 4.130e-40
Identity = 67/97 (69.07%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:    4 CSHAEGEDHELNKQIFPDDLSMQKTKWKSIITVEPKRFFKKYLSQYPADTRAVQPVVVFSHKPLNNFEELSEVCKVIDIAIVPDKPGVCVAVTETYH 294
            CS A+  + ++NK I+P + S  KTKWKS++TVEPK FF KYLSQYP DT+AVQPVVVFSH+PL++F+++S+VCKV+DIAIVPD PGVCVAVTETYH
Sbjct:   59 CSRAKANESQVNKLIYPKEGSYDKTKWKSVLTVEPKEFFDKYLSQYPGDTKAVQPVVVFSHRPLDHFKDISDVCKVMDIAIVPDNPGVCVAVTETYH 155
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BLAST of mRNA_D-dudresnayi_contig10642.715.1 vs. uniprot
Match: A0A8J2WSU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSU3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.730e-8
Identity = 67/322 (20.81%), Postives = 123/322 (38.20%), Query Frame = 1 
Query:  181 SHKPLNNFEELSEVCKVIDIAIVPDKPGVCVAVTETYHDVASYHMLHADRQKDGTFALTGNSIDGRT------LPDERAYAAARAMLLDFFKYGDKV---------NAAVDTIPKFN-------KGRVVVACLVDDSEDLELFLNSIKSAGKAGISKNKFAVFTTSQSVMNDMKNTKIKVVYIPELTNVGTIGDANVGPKLRRYFLQAWLAFACANNLNKV----MWQTPGTYWIERPDNIVNAYPAVESLWAYKGRNDKRAAPFFVTFDFFVAVGQERPVHLLHELLLHFDLIIAWDSLDAVAAYRLSENNSRYGTTTYVM 1068
            S +  ++ E +   C+ ID+ +       C+ ++        +H+   +R        TG S+  R       +P E     AR +    +   D V          AAV T P +        KG V++ C+  +  +L+L +N ++SA    I      VF     V   +K   + +V+  +     T G A        +    WL   C   +N +    ++Q    YW   P +     P +++ W   G    R AP +    +++     R   L   L+  +D+++AW S  AV +  L E ++ +  T  ++
Sbjct:   98 SWESYSSDEVIPSACEEIDVVVAHSGADRCLLLSGAASSAVPHHVTRWERHPSSP---TGWSVVSRIRESRQRMPGEGTRKRARTLAARLYSRLDDVFASLEPLLKKAAVHTHPAYKATMGSNTKGAVLIMCV--NWGNLDLLMNFLRSACDKQIDIQNLIVFAADPKVEKALKAIGV-LVFSHDALGSFTAGAARSYGD-HTFVEMMWLKLTCVYLVNALGYDLLFQDADLYWWREPWSFFATRPDIDTFWMDDGARTSRFAPLYPNTGYYLIRHNPRTALLCETLVGMYDVVLAWQSHQAVVSQVLGEFHALHALTVKIL 412
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10642.715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3HCK0_9STRA5.040e-24989.28Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0SUH7_9STRA9.040e-9051.81Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S0SWB4_9STRA4.130e-4069.07Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A8J2WSU3_9STRA2.730e-820.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10642contigD-dudresnayi_contig10642:9380..10771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1303
Cds size1191
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10642.715.1prot_D-dudresnayi_contig10642.715.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10642 9426..10705 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927570.7072954-UTR-D-dudresnayi_contig10642:9379..94251622927570.7072954-UTR-D-dudresnayi_contig10642:9379..9425Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10642 9380..9425 -
1690556811.3322458-UTR-D-dudresnayi_contig10642:9379..94251690556811.3322458-UTR-D-dudresnayi_contig10642:9379..9425Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10642 9380..9425 -
1622927570.7449853-UTR-D-dudresnayi_contig10642:10705..107711622927570.7449853-UTR-D-dudresnayi_contig10642:10705..10771Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10642 10706..10771 -
1690556811.3714788-UTR-D-dudresnayi_contig10642:10705..107711690556811.3714788-UTR-D-dudresnayi_contig10642:10705..10771Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10642 10706..10771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927570.719666-CDS-D-dudresnayi_contig10642:9425..96391622927570.719666-CDS-D-dudresnayi_contig10642:9425..9639Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10642 9426..9639 -
1690556811.3509188-CDS-D-dudresnayi_contig10642:9425..96391690556811.3509188-CDS-D-dudresnayi_contig10642:9425..9639Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10642 9426..9639 -
1622927570.7332911-CDS-D-dudresnayi_contig10642:9728..107051622927570.7332911-CDS-D-dudresnayi_contig10642:9728..10705Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10642 9729..10705 -
1690556811.3622448-CDS-D-dudresnayi_contig10642:9728..107051690556811.3622448-CDS-D-dudresnayi_contig10642:9728..10705Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10642 9729..10705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10642.715.1

>prot_D-dudresnayi_contig10642.715.1 ID=prot_D-dudresnayi_contig10642.715.1|Name=mRNA_D-dudresnayi_contig10642.715.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=397bp
MQKTKWKSIITVEPKRFFKKYLSQYPADTRAVQPVVVFSHKPLNNFEELS
EVCKVIDIAIVPDKPGVCVAVTETYHDVASYHMLHADRQKDGTFALTGNS
IDGRTLPDERAYAAARAMLLDFFKYGDKVNAAVDTIPKFNKGRVVVACLV
DDSEDLELFLNSIKSAGKAGISKNKFAVFTTSQSVMNDMKNTKIKVVYIP
ELTNVGTIGDANVGPKLRRYFLQAWLAFACANNLNKVMWQTPGTYWIERP
DNIVNAYPAVESLWAYKGRNDKRAAPFFVTFDFFVAVGQERPVHLLHELL
LHFDLIIAWDSLDAVAAYRLSENNSRYGTTTYVMAPFKVLHTELMGHDPL
KVRQAVEAKPGQTEGQDQPYVVVVPKDATDPTRAKQFLIDAGLWLM*
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mRNA from alignment at D-dudresnayi_contig10642:9380..10771-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10642.715.1 ID=mRNA_D-dudresnayi_contig10642.715.1|Name=mRNA_D-dudresnayi_contig10642.715.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1392bp|location=Sequence derived from alignment at D-dudresnayi_contig10642:9380..10771- (Desmarestia dudresnayi DdudBR16 monoicous)
GAGTGTTCACACGCAGAGGGTGAGGATCATGAGCTTAATAAACAAATATT
TCCTGATGATTTAAGCATGCAGAAAACGAAATGGAAGAGCATCATCACAG
TGGAGCCAAAAAGGTTCTTTAAGAAATATTTATCACAGTATCCTGCAGAT
ACACGTGCAGTACAGCCAGTAGTTGTATTCTCACACAAACCATTAAATAA
CTTCGAAGAATTATCAGAAGTATGTAAAGTGATTGACATTGCGATAGTGC
CCGACAAGCCAGGTGTCTGCGTGGCCGTTACAGAAACATACCATGACGTC
GCATCTTACCACATGCTACATGCAGACAGACAGAAAGATGGGACATTTGC
ACTGACCGGTAACTCTATTGATGGTCGTACACTGCCAGACGAGCGCGCCT
ACGCTGCTGCAAGAGCCATGCTACTGGATTTCTTCAAATATGGCGACAAA
GTGAATGCTGCAGTAGACACTATTCCTAAGTTCAACAAAGGTCGTGTTGT
AGTAGCATGTTTAGTAGACGATAGTGAGGATCTGGAGCTTTTTTTGAACT
CCATTAAATCAGCTGGTAAAGCAGGAATCTCTAAGAACAAATTCGCAGTC
TTCACAACTTCACAGAGTGTAATGAATGACATGAAGAATACAAAGATTAA
AGTTGTATATATCCCTGAACTGACAAATGTAGGCACTATAGGAGATGCGA
ATGTAGGACCCAAATTACGACGATACTTCTTGCAGGCGTGGTTAGCCTTT
GCATGCGCCAATAATCTGAACAAAGTAATGTGGCAGACGCCTGGTACATA
TTGGATCGAGCGCCCAGATAATATCGTCAACGCCTACCCCGCAGTGGAGT
CTCTGTGGGCATATAAAGGTAGGAATGACAAGCGCGCCGCCCCATTCTTC
GTGACCTTCGACTTCTTCGTGGCGGTGGGACAAGAGCGGCCTGTGCACCT
GCTACACGAGCTGCTGCTGCACTTCGACCTGATCATCGCATGGGACTCGT
TAGATGCCGTGGCGGCTTATAGACTCTCAGAGAATAACTCTAGGTAGGTG
ACATTATTTGTATTTTAGTTGACTGTTGGTGTGTGTTTGTGATGTACTTG
TATGATCTCACCTCTCTGGCGACTATTTGTAGATACGGAACGACGACTTA
TGTGATGGCACCCTTTAAAGTGCTGCACACGGAGCTCATGGGCCACGACC
CGTTGAAGGTGCGCCAGGCAGTGGAGGCCAAGCCGGGCCAGACAGAGGGG
CAGGACCAACCCTATGTGGTGGTTGTGCCCAAGGATGCGACCGACCCCAC
CCGGGCGAAGCAGTTCCTCATCGATGCGGGCCTGTGGTTGATGTAACTGC
GCTGCACTACAGGGTGTGTCCATCTGCTACTGTACTGTATAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10642:9380..10771-

>mRNA_D-dudresnayi_contig10642.715.1 ID=mRNA_D-dudresnayi_contig10642.715.1|Name=mRNA_D-dudresnayi_contig10642.715.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2382bp|location=Sequence derived from alignment at D-dudresnayi_contig10642:9380..10771- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCAGAAAACGAAATGGAAGAGCATCATCACAGTGGAGCCAAAAAGGTT
CTTTAAGAAATATTTATCACAGTATCCTGCAGATACACGTGCAGTACAGC
CAGTAGTTGTATTCTCACACAAACCATTAAATAACTTCGAAGAATTATCA
GAAGTATGTAAAGTGATTGACATTGCGATAGTGCCCGACAAGCCAGGTGT
CTGCGTGGCCGTTACAGAAACATACCATGACGTCGCATCTTACCACATGC
TACATGCAGACAGACAGAAAGATGGGACATTTGCACTGACCGGTAACTCT
ATTGATGGTCGTACACTGCCAGACGAGCGCGCCTACGCTGCTGCAAGAGC
CATGCTACTGGATTTCTTCAAATATGGCGACAAAGTGAATGCTGCAGTAG
ACACTATTCCTAAGTTCAACAAAGGTCGTGTTGTAGTAGCATGTTTAGTA
GACGATAGTGAGGATCTGGAGCTTTTTTTGAACTCCATTAAATCAGCTGG
TAAAGCAGGAATCTCTAAGAACAAATTCGCAGTCTTCACAACTTCACAGA
GTGTAATGAATGACATGAAGAATACAAAGATTAAAGTTGTATATATCCCT
GAACTGACAAATGTAGGCACTATAGGAGATGCGAATGTAGGACCCAAATT
ACGACGATACTTCTTGCAGGCGTGGTTAGCCTTTGCATGCGCCAATAATC
TGAACAAAGTAATGTGGCAGACGCCTGGTACATATTGGATCGAGCGCCCA
GATAATATCGTCAACGCCTACCCCGCAGTGGAGTCTCTGTGGGCATATAA
AGGTAGGAATGACAAGCGCGCCGCCCCATTCTTCGTGACCTTCGACTTCT
TCGTGGCGGTGGGACAAGAGCGGCCTGTGCACCTGCTACACGAGCTGCTG
CTGCACTTCGACCTGATCATCGCATGGGACTCGTTAGATGCCGTGGCGGC
TTATAGACTCTCAGAGAATAACTCTAGATGCAGAAAACGAAATGGAAGAG
CATCATCACAGTGGAGCCAAAAAGGTTCTTTAAGAAATATTTATCACAGT
ATCCTGCAGATACACGTGCAGTACAGCCAGTAGTTGTATTCTCACACAAA
CCATTAAATAACTTCGAAGAATTATCAGAAGTATGTAAAGTGATTGACAT
TGCGATAGTGCCCGACAAGCCAGGTGTCTGCGTGGCCGTTACAGAAACAT
ACCATGACGTCGCATCTTACCACATGCTACATGCAGACAGACAGAAAGAT
GGGACATTTGCACTGACCGGTAACTCTATTGATGGTCGTACACTGCCAGA
CGAGCGCGCCTACGCTGCTGCAAGAGCCATGCTACTGGATTTCTTCAAAT
ATGGCGACAAAGTGAATGCTGCAGTAGACACTATTCCTAAGTTCAACAAA
GGTCGTGTTGTAGTAGCATGTTTAGTAGACGATAGTGAGGATCTGGAGCT
TTTTTTGAACTCCATTAAATCAGCTGGTAAAGCAGGAATCTCTAAGAACA
AATTCGCAGTCTTCACAACTTCACAGAGTGTAATGAATGACATGAAGAAT
ACAAAGATTAAAGTTGTATATATCCCTGAACTGACAAATGTAGGCACTAT
AGGAGATGCGAATGTAGGACCCAAATTACGACGATACTTCTTGCAGGCGT
GGTTAGCCTTTGCATGCGCCAATAATCTGAACAAAGTAATGTGGCAGACG
CCTGGTACATATTGGATCGAGCGCCCAGATAATATCGTCAACGCCTACCC
CGCAGTGGAGTCTCTGTGGGCATATAAAGGTAGGAATGACAAGCGCGCCG
CCCCATTCTTCGTGACCTTCGACTTCTTCGTGGCGGTGGGACAAGAGCGG
CCTGTGCACCTGCTACACGAGCTGCTGCTGCACTTCGACCTGATCATCGC
ATGGGACTCGTTAGATGCCGTGGCGGCTTATAGACTCTCAGAGAATAACT
CTAGATACGGAACGACGACTTATGTGATGGCACCCTTTAAAGTGCTGCAC
ACGGAGCTCATGGGCCACGACCCGTTGAAGGTGCGCCAGGCAGTGGAGGC
CAAGCCGGGCCAGACAGAGGGGCAGGACCAACCCTATGTGGTGGTTGTGC
CCAAGGATGCGACCGACCCCACCCGGGCGAAGCAGTTCCTCATCGATGCG
GGCCTGTGGTTGATGTAAATACGGAACGACGACTTATGTGATGGCACCCT
TTAAAGTGCTGCACACGGAGCTCATGGGCCACGACCCGTTGAAGGTGCGC
CAGGCAGTGGAGGCCAAGCCGGGCCAGACAGAGGGGCAGGACCAACCCTA
TGTGGTGGTTGTGCCCAAGGATGCGACCGACCCCACCCGGGCGAAGCAGT
TCCTCATCGATGCGGGCCTGTGGTTGATGTAA
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