mRNA_D-dudresnayi_contig10635.709.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10635.709.1
Unique NamemRNA_D-dudresnayi_contig10635.709.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10635.709.1 vs. uniprot
Match: A0A7S3HB99_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HB99_9STRA)

HSP 1 Score: 267 bits (682), Expect = 2.830e-80
Identity = 134/176 (76.14%), Postives = 157/176 (89.20%), Query Frame = 1 
Query:    1 MASQIGGKGGSDRP-ATGGPMSKAVLDTVGGIGNGLMSVCKGVTEAIGEVGSAIGDSAMHHSTARHGEDYAETITRAYVDAAGEIGLAGYKVANVAALGWQGVLVNAALEGTTFLVSLYEYLIGPVLLQGYMDMMQMPLVKVRRYFVVLRPWSIAFYKTATDITKKPYKIVPTSML 525
            MA++ GGKGGSDRP  +   +++  LDTVGG+GNG+MSVCKGVTEA+GEVGSAIGDSA+HHST  HG +YAE +T+ YVDAA EIGLAGYK+ANVAALGWQGVLVN ALEG+TFL+SLYEYL+GPV++QGYMDMMQ+P  KV R+FVVLRPWSIAFYK ATDIT+KP+KIVPTSML
Sbjct:  173 MAAEAGGKGGSDRPNGSEDALTRTFLDTVGGLGNGIMSVCKGVTEAMGEVGSAIGDSAIHHSTRVHGHEYAEHVTQHYVDAASEIGLAGYKLANVAALGWQGVLVNCALEGSTFLISLYEYLMGPVIMQGYMDMMQLPNPKVHRFFVVLRPWSIAFYKNATDITRKPFKIVPTSML 348
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10635.709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3HB99_9STRA2.830e-8076.14Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10635contigD-dudresnayi_contig10635:366..890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size525
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927569.9442117-CDS-D-dudresnayi_contig10635:365..8901622927569.9442117-CDS-D-dudresnayi_contig10635:365..890Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10635 366..890 +
1690556811.0379446-CDS-D-dudresnayi_contig10635:365..8901690556811.0379446-CDS-D-dudresnayi_contig10635:365..890Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10635 366..890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10635.709.1prot_D-dudresnayi_contig10635.709.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10635 366..890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10635.709.1

>prot_D-dudresnayi_contig10635.709.1 ID=prot_D-dudresnayi_contig10635.709.1|Name=mRNA_D-dudresnayi_contig10635.709.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=175bp
MASQIGGKGGSDRPATGGPMSKAVLDTVGGIGNGLMSVCKGVTEAIGEVG
SAIGDSAMHHSTARHGEDYAETITRAYVDAAGEIGLAGYKVANVAALGWQ
GVLVNAALEGTTFLVSLYEYLIGPVLLQGYMDMMQMPLVKVRRYFVVLRP
WSIAFYKTATDITKKPYKIVPTSML
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mRNA from alignment at D-dudresnayi_contig10635:366..890+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10635.709.1 ID=mRNA_D-dudresnayi_contig10635.709.1|Name=mRNA_D-dudresnayi_contig10635.709.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=525bp|location=Sequence derived from alignment at D-dudresnayi_contig10635:366..890+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCCTCTCAGATAGGAGGTAAAGGGGGCTCCGATCGCCCTGCTACTGG
TGGTCCCATGTCAAAGGCAGTCTTGGACACGGTGGGTGGGATCGGGAATG
GGCTGATGTCTGTCTGCAAGGGAGTGACCGAGGCCATCGGGGAAGTGGGG
AGTGCGATCGGGGACTCCGCGATGCACCACTCCACTGCTCGGCATGGCGA
AGATTACGCAGAGACAATCACACGCGCTTATGTGGATGCAGCAGGAGAGA
TTGGATTAGCCGGTTATAAAGTAGCGAACGTGGCTGCATTGGGCTGGCAG
GGCGTGCTAGTCAATGCTGCACTCGAAGGCACAACCTTTTTAGTGAGTTT
GTATGAGTATCTCATTGGTCCAGTGCTGCTACAAGGATACATGGACATGA
TGCAGATGCCTTTAGTAAAAGTGCGGCGCTATTTCGTAGTACTGCGGCCG
TGGTCAATAGCATTCTACAAGACTGCGACGGATATCACGAAGAAACCCTA
TAAAATTGTACCCACATCGATGCTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10635:366..890+

>mRNA_D-dudresnayi_contig10635.709.1 ID=mRNA_D-dudresnayi_contig10635.709.1|Name=mRNA_D-dudresnayi_contig10635.709.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at D-dudresnayi_contig10635:366..890+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCCTCTCAGATAGGAGGTAAAGGGGGCTCCGATCGCCCTGCTACTGG
TGGTCCCATGTCAAAGGCAGTCTTGGACACGGTGGGTGGGATCGGGAATG
GGCTGATGTCTGTCTGCAAGGGAGTGACCGAGGCCATCGGGGAAGTGGGG
AGTGCGATCGGGGACTCCGCGATGCACCACTCCACTGCTCGGCATGGCGA
AGATTACGCAGAGACAATCACACGCGCTTATGTGGATGCAGCAGGAGAGA
TTGGATTAGCCGGTTATAAAGTAGCGAACGTGGCTGCATTGGGCTGGCAG
GGCGTGCTAGTCAATGCTGCACTCGAAGGCACAACCTTTTTAGTGAGTTT
GTATGAGTATCTCATTGGTCCAGTGCTGCTACAAGGATACATGGACATGA
TGCAGATGCCTTTAGTAAAAGTGCGGCGCTATTTCGTAGTACTGCGGCCG
TGGTCAATAGCATTCTACAAGACTGCGACGGATATCACGAAGAAACCCTA
TAAAATTGTACCCACATCGATGCTGATGGCCTCTCAGATAGGAGGTAAAG
GGGGCTCCGATCGCCCTGCTACTGGTGGTCCCATGTCAAAGGCAGTCTTG
GACACGGTGGGTGGGATCGGGAATGGGCTGATGTCTGTCTGCAAGGGAGT
GACCGAGGCCATCGGGGAAGTGGGGAGTGCGATCGGGGACTCCGCGATGC
ACCACTCCACTGCTCGGCATGGCGAAGATTACGCAGAGACAATCACACGC
GCTTATGTGGATGCAGCAGGAGAGATTGGATTAGCCGGTTATAAAGTAGC
GAACGTGGCTGCATTGGGCTGGCAGGGCGTGCTAGTCAATGCTGCACTCG
AAGGCACAACCTTTTTAGTGAGTTTGTATGAGTATCTCATTGGTCCAGTG
CTGCTACAAGGATACATGGACATGATGCAGATGCCTTTAGTAAAAGTGCG
GCGCTATTTCGTAGTACTGCGGCCGTGGTCAATAGCATTCTACAAGACTG
CGACGGATATCACGAAGAAACCCTATAAAATTGTACCCACATCGATGCTG
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