mRNA_D-dudresnayi_contig10631.708.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10631.708.1
Unique NamemRNA_D-dudresnayi_contig10631.708.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10631.708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10631contigD-dudresnayi_contig10631:4554..5193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10631.708.1prot_D-dudresnayi_contig10631.708.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10631 4554..5170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927569.8856916-CDS-D-dudresnayi_contig10631:4553..47841622927569.8856916-CDS-D-dudresnayi_contig10631:4553..4784Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10631 4554..4784 -
1690556811.0111475-CDS-D-dudresnayi_contig10631:4553..47841690556811.0111475-CDS-D-dudresnayi_contig10631:4553..4784Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10631 4554..4784 -
1622927569.896017-CDS-D-dudresnayi_contig10631:5050..51701622927569.896017-CDS-D-dudresnayi_contig10631:5050..5170Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10631 5051..5170 -
1690556811.019633-CDS-D-dudresnayi_contig10631:5050..51701690556811.019633-CDS-D-dudresnayi_contig10631:5050..5170Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10631 5051..5170 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927569.9064329-UTR-D-dudresnayi_contig10631:5170..51931622927569.9064329-UTR-D-dudresnayi_contig10631:5170..5193Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10631 5171..5193 -
1690556811.0288165-UTR-D-dudresnayi_contig10631:5170..51931690556811.0288165-UTR-D-dudresnayi_contig10631:5170..5193Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10631 5171..5193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10631.708.1

>prot_D-dudresnayi_contig10631.708.1 ID=prot_D-dudresnayi_contig10631.708.1|Name=mRNA_D-dudresnayi_contig10631.708.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=117bp
MEDPKFQVLDRNSGVVKGVRMVCPSCLSNDNTASIGWHRQVRVVHTADDF
GNWFPLGHRYICFNPTCEAVQKAVQSKMDLFLGASGGVVGGTGAGDAAGA
SSGARIDDAAEATCETE
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mRNA from alignment at D-dudresnayi_contig10631:4554..5193-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10631.708.1 ID=mRNA_D-dudresnayi_contig10631.708.1|Name=mRNA_D-dudresnayi_contig10631.708.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=640bp|location=Sequence derived from alignment at D-dudresnayi_contig10631:4554..5193- (Desmarestia dudresnayi DdudBR16 monoicous)
AGGTCTTCCACCGAGAGGCCCTAATGGAAGACCCAAAATTCCAGGTACTA
GACAGGAATTCAGGCGTCGTCAAAGGAGTCAGGATGGTCTGCCCATCGTG
CCTCAGCAATGACAATACAGCATCAATCGGGTGGCACCGACAGGTGGGCT
ATACATATTGGCGCAGCAGCAGGCGGCAGTCAGCTAGCTGTACAACCATT
AAACTCCTTCCGAAGCATCCCAGAATGATCATCTCTTGACATATGTTTGT
CGGACGTGCTGCCTCTCAGCTAGCTGTACAACAACTAAACTCCTTTCGAA
GCATCCCAGAATGATCAACTCTGGACATATGTTTGTCGGACGTGCTGCCT
CGTTTGCCGCTATTTTTCTGCACCGTCTGTTTGTCGCGCTTTCTCTCTCC
CCACTGAAGGTGCGCGTGGTGCATACTGCAGACGATTTTGGAAACTGGTT
TCCCCTGGGCCACCGGTATATTTGCTTCAACCCAACCTGTGAAGCTGTGC
AGAAGGCGGTCCAGAGCAAGATGGATCTGTTTTTGGGGGCCTCTGGTGGT
GTTGTCGGCGGAACAGGGGCTGGTGATGCGGCTGGGGCGAGCAGTGGAGC
AAGGATTGATGATGCGGCAGAAGCAACCTGTGAGACGGAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10631:4554..5193-

>mRNA_D-dudresnayi_contig10631.708.1 ID=mRNA_D-dudresnayi_contig10631.708.1|Name=mRNA_D-dudresnayi_contig10631.708.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at D-dudresnayi_contig10631:4554..5193- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGAAGACCCAAAATTCCAGGTACTAGACAGGAATTCAGGCGTCGTCAA
AGGAGTCAGGATGGTCTGCCCATCGTGCCTCAGCAATGACAATACAGCAT
CAATCGGGTGGCACCGACAGATGGAAGACCCAAAATTCCAGGTACTAGAC
AGGAATTCAGGCGTCGTCAAAGGAGTCAGGATGGTCTGCCCATCGTGCCT
CAGCAATGACAATACAGCATCAATCGGGTGGCACCGACAGGTGCGCGTGG
TGCATACTGCAGACGATTTTGGAAACTGGTTTCCCCTGGGCCACCGGTAT
ATTTGCTTCAACCCAACCTGTGAAGCTGTGCAGAAGGCGGTCCAGAGCAA
GATGGATCTGTTTTTGGGGGCCTCTGGTGGTGTTGTCGGCGGAACAGGGG
CTGGTGATGCGGCTGGGGCGAGCAGTGGAGCAAGGATTGATGATGCGGCA
GAAGCAACCTGTGAGACGGAAGTGCGCGTGGTGCATACTGCAGACGATTT
TGGAAACTGGTTTCCCCTGGGCCACCGGTATATTTGCTTCAACCCAACCT
GTGAAGCTGTGCAGAAGGCGGTCCAGAGCAAGATGGATCTGTTTTTGGGG
GCCTCTGGTGGTGTTGTCGGCGGAACAGGGGCTGGTGATGCGGCTGGGGC
GAGCAGTGGAGCAAGGATTGATGATGCGGCAGAAGCAACCTGTGAGACGG
AA
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