mRNA_D-dudresnayi_contig10623.703.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-dudresnayi_contig10623.703.1
Unique Name	mRNA_D-dudresnayi_contig10623.703.1
Type	mRNA
Organism	Desmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)

Homology

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BLAST of mRNA_D-dudresnayi_contig10623.703.1 vs. uniprot
Match: A0A6H5JK59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK59_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.280e-24
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 2

Query:   20 EWFLMAGTWLSRWHAYVLSGAGEDLDFPTPLPGPITNGDLVDANGSPLSGKEAGKHYR 193
            +W+LMAGTWLSRWHAYVLSG GEDLDFPTP PGPITNGD+VD N  P+ G  AGKHYR
Sbjct: 1175 KWYLMAGTWLSRWHAYVLSGTGEDLDFPTPSPGPITNGDIVDENLVPIPGMVAGKHYR 1232

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BLAST of mRNA_D-dudresnayi_contig10623.703.1 vs. uniprot
Match: A0A812RF68_9DINO (CPK2 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RF68_9DINO)

HSP 1 Score: 77.4 bits (189), Expect = 2.270e-14
Identity = 41/93 (44.09%), Postives = 52/93 (55.91%), Query Frame = 2

Query:    2 DEEGEEEWFLMAGTWLSRWHAYVLSGAGEDLDFPTPLPGPITNGDLVDANGSPLSGKEAGKHYRGAMTEVWEYLYNRYGGGPVIRRSDPDGLY 280
            D +  E WFL+   WL RW  +  +G G        LPGPI+N +LV A+GSPL  K+  K YR    +VWE+L  +YGGGP I R     LY
Sbjct:   50 DTKTSEVWFLVCSQWLQRWKDFA-NGKGA-------LPGPISNCNLVGADGSPLPDKKVQKDYRAVNQKVWEFLRKQYGGGPEILRRQTMQLY 134

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BLAST of mRNA_D-dudresnayi_contig10623.703.1 vs. uniprot
Match: A0A7S4KXZ0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KXZ0_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 6.140e-12
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 2

Query:   17 EEWFLMAGTWLSRWHAYVLSGAGEDLDFPTPLPGPITNGDLVDANGSPLSGKEAGKHYRGAMTEVWEYLYNRYGGGPVIRR 259
            E W+L+   WL++W AY               PGPI N  L+   G PL   +   HYRG +  VW +LY++YGGGP++ R
Sbjct:  168 ESWYLIESGWLTKWLAYAQKKKNIH-------PGPIPNNTLLSDKGLPLPSLQIRVHYRGLVPYVWNFLYSKYGGGPILAR 241

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BLAST of mRNA_D-dudresnayi_contig10623.703.1 vs. uniprot
Match: A0A812LCB3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812LCB3_9DINO)

HSP 1 Score: 59.7 bits (143), Expect = 3.800e-8
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 2

Query:    2 DEEGEEEWFLMAGTWLSRWHAYVLSGAGEDLDFPTPLPGPITNGDLVDANGSPLSGKEAGKHYRGAMTEVWEYLYNRYGGGPVIRR 259
            D +  E  FL+   WL +W  ++ +         T  PGPI+N +L+ A+G P   K+  K YRG   +VW++  +RYGGGP I+R
Sbjct:  511 DTKHGEVCFLLCSQWL-QWKDFLRTK--------TSPPGPISNHNLIGADGFPKPNKQPIKDYRGVKEKVWKFWLSRYGGGPEIKR 587

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BLAST of mRNA_D-dudresnayi_contig10623.703.1 vs. uniprot
Match: A0A5J4X1T0_9EUKA (DUSP domain-containing protein n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4X1T0_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 2.060e-5
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 2

Query:  110 LPGPITNGDLVDANGSPLSGKEAGKHYRGAMTEVWEYLYNRYGGGPVIRRSDPDGLYE 283
            LPGPITN  L++++      +   + YRG   E+W++L+  YGGGP I+R   D +YE
Sbjct:   76 LPGPITNNKLLESDNVTPVPELTHRDYRGVNKEMWDFLFQIYGGGPEIKRRTLD-IYE 132

The following BLAST results are available for this feature:

BLAST of mRNA_D-dudresnayi_contig10623.703.1 vs. uniprot

BLAST of mRNA_D-dudresnayi_contig10623.703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
A0A6H5JK59_9PHAE	1.280e-24	79.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A812RF68_9DINO	2.270e-14	44.09	CPK2 protein n=1 Tax=Symbiodinium natans TaxID=878...	[more]
A0A7S4KXZ0_9EUKA	6.140e-12	38.27	Hypothetical protein (Fragment) n=1 Tax=Paramoeba ...	[more]
A0A812LCB3_9DINO	3.800e-8	37.21	Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP...	[more]
A0A5J4X1T0_9EUKA	2.060e-5	41.38	DUSP domain-containing protein n=1 Tax=Streblomast...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-dudresnayi_contig10623	contig	D-dudresnayi_contig10623:8145..10510 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Opisthokonta
Seed ortholog score	62.4
Seed ortholog evalue	1.3e-07
Seed eggNOG ortholog	192875.XP_004364902.1
Preferred name	USP20
KEGG ko	ko:K11848
GOs	GO:0000151,GO:0000153,GO:0000226,GO:0000902,GO:0000904,GO:0001664,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005912,GO:0005924,GO:0005925,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007154,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008270,GO:0008277,GO:0009056,GO:0009057,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009966,GO:0009987,GO:0009991,GO:0010506,GO:0010646,GO:0012505,GO:0015630,GO:0016043,GO:0016477,GO:0016579,GO:0016787,GO:0017016,GO:0017160,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0021551,GO:0022008,GO:0022402,GO:0023051,GO:0030030,GO:0030054,GO:0030055,GO:0030154,GO:0030163,GO:0030182,GO:0030891,GO:0031023,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031647,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032091,GO:0032092,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0036211,GO:0036459,GO:0040011,GO:0042221,GO:0042330,GO:0042594,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048468,GO:0048471,GO:0048583,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051020,GO:0051098,GO:0051099,GO:0051100,GO:0051179,GO:0051298,GO:0051603,GO:0051674,GO:0051716,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070161,GO:0070536,GO:0070646,GO:0070647,GO:0071108,GO:0071496,GO:0071704,GO:0071840,GO:0097485,GO:0101005,GO:0120036,GO:0120039,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904888,GO:1990234
EggNOG free text desc.	ubiquitin
EggNOG OGs	39RU8@33154,COG5560@1,KOG1870@2759
EC	3.4.19.12
COG Functional cat.	O
Best tax level	Opisthokonta
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko01002,ko04121
Hectar predicted targeting category	other localisation
Exons	3
Model size	321
Cds size	273
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_D-dudresnayi_contig10623.703.1	prot_D-dudresnayi_contig10623.703.1	Desmarestia dudresnayi DdudBR16 monoicous	polypeptide	D-dudresnayi_contig10623 8176..10493 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927569.0407078-UTR-D-dudresnayi_contig10623:8144..8175	1622927569.0407078-UTR-D-dudresnayi_contig10623:8144..8175	Desmarestia dudresnayi DdudBR16 monoicous	UTR	D-dudresnayi_contig10623 8145..8175 +
1690556810.7967126-UTR-D-dudresnayi_contig10623:8144..8175	1690556810.7967126-UTR-D-dudresnayi_contig10623:8144..8175	Desmarestia dudresnayi DdudBR16 monoicous	UTR	D-dudresnayi_contig10623 8145..8175 +
1622927569.101301-UTR-D-dudresnayi_contig10623:10493..10510	1622927569.101301-UTR-D-dudresnayi_contig10623:10493..10510	Desmarestia dudresnayi DdudBR16 monoicous	UTR	D-dudresnayi_contig10623 10494..10510 +
1690556810.8436165-UTR-D-dudresnayi_contig10623:10493..10510	1690556810.8436165-UTR-D-dudresnayi_contig10623:10493..10510	Desmarestia dudresnayi DdudBR16 monoicous	UTR	D-dudresnayi_contig10623 10494..10510 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927569.0567012-CDS-D-dudresnayi_contig10623:8175..8221	1622927569.0567012-CDS-D-dudresnayi_contig10623:8175..8221	Desmarestia dudresnayi DdudBR16 monoicous	CDS	D-dudresnayi_contig10623 8176..8221 +
1690556810.8135633-CDS-D-dudresnayi_contig10623:8175..8221	1690556810.8135633-CDS-D-dudresnayi_contig10623:8175..8221	Desmarestia dudresnayi DdudBR16 monoicous	CDS	D-dudresnayi_contig10623 8176..8221 +
1622927569.0771215-CDS-D-dudresnayi_contig10623:9653..9768	1622927569.0771215-CDS-D-dudresnayi_contig10623:9653..9768	Desmarestia dudresnayi DdudBR16 monoicous	CDS	D-dudresnayi_contig10623 9654..9768 +
1690556810.8235686-CDS-D-dudresnayi_contig10623:9653..9768	1690556810.8235686-CDS-D-dudresnayi_contig10623:9653..9768	Desmarestia dudresnayi DdudBR16 monoicous	CDS	D-dudresnayi_contig10623 9654..9768 +
1622927569.0886397-CDS-D-dudresnayi_contig10623:10381..10493	1622927569.0886397-CDS-D-dudresnayi_contig10623:10381..10493	Desmarestia dudresnayi DdudBR16 monoicous	CDS	D-dudresnayi_contig10623 10382..10493 +
1690556810.8334136-CDS-D-dudresnayi_contig10623:10381..10493	1690556810.8334136-CDS-D-dudresnayi_contig10623:10381..10493	Desmarestia dudresnayi DdudBR16 monoicous	CDS	D-dudresnayi_contig10623 10382..10493 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-dudresnayi_contig10623:8145..10510+
coding sequence from alignment at D-dudresnayi_contig10623:8145..10510+

protein sequence of mRNA_D-dudresnayi_contig10623.703.1

>prot_D-dudresnayi_contig10623.703.1 ID=prot_D-dudresnayi_contig10623.703.1|Name=mRNA_D-dudresnayi_contig10623.703.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=91bp
MAGTWLSRWHAYVLSGAGEDLDFPTPLPGPITNGDLVDANGSPLSGKEAG
KHYRGAMTEVWEYLYNRYGGGPVIRRSDPDGLYEGSEVAS*

mRNA from alignment at D-dudresnayi_contig10623:8145..10510+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-dudresnayi_contig10623.703.1 ID=mRNA_D-dudresnayi_contig10623.703.1|Name=mRNA_D-dudresnayi_contig10623.703.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2366bp|location=Sequence derived from alignment at D-dudresnayi_contig10623:8145..10510+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGACGAAGAAGGGGAGGAAGAATGGTTTCTGATGGCGGGGACGTGGCTGA
GCAGGTGGCACGCGTACGTGCTATCGGGTGAGTTCATGTTTTGGGTTGTT
GATGTATTGTTGTTTTGCGCTTTGCGTTCATTTTTGCTTGTGGTTGGGAG
AAAGTTGGGGTACTTTTTGTTGTCTTGGTTCTTGTTTCGACCGTGCGTCG
GACGGCTTGATGGACAAGTTCAAGCGCGACGTCGGGCATCGGCAACCCGG
TCCCTCCCGCCGCCTCCCTCTCTAGATTATAACTTTATAGCTTTGTCGGT
AGTGTCACCGCGCATTGTCTCGGAATTGACTGACTTGTGGGTGAAGCGTA
AGTAAGCTGCTCTAGCGTTTTGGTAGCTGGGATCCATAGGATGTTCGTTT
TATTATATGGTTAGTGACAGCTTGGGCTGTTTTAAACATTTCGGAAAATT
ATACCACTAACCCTGTGGCCAGAACCCTATCGAACACACCTATACTAATA
GCAAGTCAAATATCTCTCAAAATCGGTGTCACAAAAAAAACTAGGGCTGT
GTATCGATAGCGTAAAACGATATAATATACCTGGTACGAAGTAGATATCG
AAAATCAGCGCAGCCGATGTATCGATATTTTATATTTTCCCGATATATAA
AAATGGAGCGTTTTCTCTTCATTTCCCATCGAAATTGTCACATAAAACGT
CATAATAACTAGTCGTGTTTAACCGAAATAGGAAGTAGAGCATATCACTC
ACCACTATGAAGCTCCAACTGTAAATAATGCAGCGTGTCCATGCACTGAA
AAAATTTTCAAACTATAGAGCTCATCGCTTATGTGGTTTTGCGTACTTGT
GGTCTACTGGTGTTGTGTGTACTCGTTGTGCTGCCTTCATGAGAGAGAGA
AAAAAGGTCAATATCCCCTGTTTCCCTGCAAAAAATGTCTTCCTACCCTT
TAGGAAACCCTCCCTAAAAGTATCAAAAGTATCGGTGATCTGATTTTCCG
ATATTAATATATATAGTATCGTCCGATATAATCGAAAGTATCGTTACCGA
TATACAGCCCTAAAAAACACGCTAAACCTACTACCGTATGTGCCATTCAC
GTCACGCCTGTAGTCGACCACGGTAGCGCCTTTGCCATGTTGTCTTGAGG
GAGGCGCCCTGTTGTGTGCGTTCAGCAAAATATGAATGCCGGCCGTGGCA
CATGGTGGTGGTGACTTGGCGAGTCACGAAACCAGTCACGCGTTTTTACC
AACGAAAACCTTTTTGGAGCAAAAATTCAAGATTCAAGACTCTAGCTCAA
TAAATAGTCGCACTGACGTTTCTGTCTTTTTCGTCGCAGTTTATTGTTAT
GCCACCTGTGATTATTATGTCACTTGTGATATGACGCTTGTTTTTTTGGT
TTTATCAGGCGGAGAGATACACGTTTTTAGTCTCACTTTTTCATTATCCG
CCCATCCCGTCCGGTCCTTTTTTCATTTTTTTTATTTATTTATTTAATAA
ACTTGGCAGGAGCCGGAGAAGATCTAGACTTCCCTACGCCCCTTCCTGGT
CCGATCACGAACGGCGACCTCGTTGACGCGAACGGTAGTCCTCTGTCCGG
AAAGGAGGCCGGGAAGCATTACCGGTGAGTGCTGGGTCGGGTCAAACAAA
GCATGTGCCCGAAGGCGGCGGTTTGATAGCGTTCTTGTAAAGGTACTCCC
TCAGGGTTTGTTTTGTTCCCTATACAGCAACATGAACGGGAAAACATATG
TATATATGTGTATGAGCAGATTAGGCTCTATATCCCTACTTAGCGCGCTG
TTGTCATATGTGCAAGCGCGCGGAGATATTGAAACCGTTATGGTGTGTAG
TTGGGAGATCATCACGTCTGTTGCGCGTTGAGACGTTTTGGCTACCCAGG
ACACACGACGGGGCGTTGCATGATGTATCGAAACCCATGGCCAAACCTTT
TTTTTGTTGCATGATTATATAGCAACGCAAAGAATGATGGTTGTGAATAT
AACAGATCCATTATTAGCAGCTGGTATCGTTCTTGTTGTAGGGTGACACG
ACGAAGTAAAAAATAACCCAGGGTATCGCGCGGTCTCTCCCGGCGTTGTT
CGGGATGCTGATGTAATGGGTCTAAATATTCTGGCGTGCTTCAATCATAA
CGACCCCCCCCCCCCCCACCTCCCCTTTCTTCTTGCTTCTTGCCTCCCAC
CCTTGTGTGCGCCCTGTGGGCCGTTGTACACTGGCAGGGGTGCGATGACA
GAGGTGTGGGAGTATCTATACAACCGCTACGGTGGTGGTCCCGTTATTCG
CCGCAGCGATCCTGATGGTCTATATGAGGGCTCTGAGGTGGCCTCATAGT
TAAGGGATGACGGGGG

Coding sequence (CDS) from alignment at D-dudresnayi_contig10623:8145..10510+

>mRNA_D-dudresnayi_contig10623.703.1 ID=mRNA_D-dudresnayi_contig10623.703.1|Name=mRNA_D-dudresnayi_contig10623.703.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at D-dudresnayi_contig10623:8145..10510+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCGGGGACGTGGCTGAGCAGGTGGCACGCGTACGTGCTATCGGATGG
CGGGGACGTGGCTGAGCAGGTGGCACGCGTACGTGCTATCGGGAGCCGGA
GAAGATCTAGACTTCCCTACGCCCCTTCCTGGTCCGATCACGAACGGCGA
CCTCGTTGACGCGAACGGTAGTCCTCTGTCCGGAAAGGAGGCCGGGAAGC
ATTACCGGAGCCGGAGAAGATCTAGACTTCCCTACGCCCCTTCCTGGTCC
GATCACGAACGGCGACCTCGTTGACGCGAACGGTAGTCCTCTGTCCGGAA
AGGAGGCCGGGAAGCATTACCGGGGTGCGATGACAGAGGTGTGGGAGTAT
CTATACAACCGCTACGGTGGTGGTCCCGTTATTCGCCGCAGCGATCCTGA
TGGTCTATATGAGGGCTCTGAGGTGGCCTCATAGGGGTGCGATGACAGAG
GTGTGGGAGTATCTATACAACCGCTACGGTGGTGGTCCCGTTATTCGCCG
CAGCGATCCTGATGGTCTATATGAGGGCTCTGAGGTGGCCTCATAG