|
Homology
BLAST of mRNA_D-dudresnayi_contig10603.684.1 vs. uniprot
Match: A0A6H5KB05_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE) HSP 1 Score: 205 bits (521), Expect = 9.270e-58 Identity = 119/143 (83.22%), Postives = 129/143 (90.21%), Query Frame = 1
Query: 124 YLEPVVAPLSMVEWSHEPLLRLGRCELPQPREWTLADIGKEIEEDLGEALREQTDGSSNAGLGHGSYXXXXXXXXXXXXXXXXXXEELDRDSEKLLQCLEAVYSSDRVSEEVVMSVEETLRTKPSVQGMFLQVLRHASRRASA 552
Y EPV+APLS+V+WS+EPLL LG C+LPQPREWTLADIGKEI EDLGE+LR QT+GS+NAGLGHG+Y XXXXXXXXXXXXX EELDRDSEKLLQCLEAVYSSDRVSEEVVM VEETLRTKP+VQ MFLQVLRHASRR A
Sbjct: 1663 YYEPVLAPLSLVDWSYEPLLALGDCDLPQPREWTLADIGKEIAEDLGESLRAQTEGSANAGLGHGAYSLKAXXXXXXXXXXXXXDEELDRDSEKLLQCLEAVYSSDRVSEEVVMDVEETLRTKPAVQKMFLQVLRHASRRGYA 1805
BLAST of mRNA_D-dudresnayi_contig10603.684.1 vs. uniprot
Match: D8LB83_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI) HSP 1 Score: 200 bits (509), Expect = 3.810e-56 Identity = 122/147 (82.99%), Postives = 130/147 (88.44%), Query Frame = 1
Query: 112 DSSVYLEPVVAPLSMVEWSHEPLLRLGRCELPQPREWTLADIGKEIEEDLGEALREQTDGSSNAGLGHGSYXXXXXXXXXXXXXXXXXXEELDRDSEKLLQCLEAVYSSDRVSEEVVMSVEETLRTKPSVQGMFLQVLRHASRRASA 552
D Y EPV+APLS+V+WSHEPL LG +LPQPREWTLADIGKEI EDLGEALR QT+GS+NAGLGHG+Y XXXXXXXXXXXXXXXXEELDRDSEKLLQCLEAVYSSDRVSEEVVM VEETLRTKP VQ MFLQVLRHAS+R A
Sbjct: 1608 DDEGYYEPVLAPLSLVDWSHEPLFALGDWDLPQPREWTLADIGKEIAEDLGEALRAQTEGSANAGLGHGAYSLXXXXXXXXXXXXXXXXEELDRDSEKLLQCLEAVYSSDRVSEEVVMDVEETLRTKPVVQKMFLQVLRHASQRGYA 1754
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 203.0 |
Seed ortholog evalue | 1.2e-49 |
Seed eggNOG ortholog | 2880.D8LB83 |
Preferred name | SCD1 |
KEGG ko | ko:K03361,ko:K20164 |
KEGG Pathway | ko04111,ko04120,map04111,map04120 |
KEGG Module | M00407 |
GOs | GO:0000151,GO:0000278,GO:0000281,GO:0000819,GO:0000910,GO:0000911,GO:0001568,GO:0001570,GO:0001932,GO:0001934,GO:0001944,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007166,GO:0007176,GO:0007219,GO:0007275,GO:0008150,GO:0008152,GO:0008156,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009825,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010235,GO:0010374,GO:0010440,GO:0010468,GO:0010469,GO:0010498,GO:0010506,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010594,GO:0010604,GO:0010605,GO:0010632,GO:0010638,GO:0010646,GO:0010647,GO:0010721,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010948,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022603,GO:0023051,GO:0023052,GO:0023056,GO:0030135,GO:0030136,GO:0030154,GO:0030162,GO:0030163,GO:0030234,GO:0030323,GO:0030324,GO:0030332,GO:0030334,GO:0030674,GO:0031146,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031461,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032446,GO:0032501,GO:0032502,GO:0032506,GO:0032875,GO:0032876,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0033554,GO:0033674,GO:0034644,GO:0035239,GO:0035295,GO:0036211,GO:0040007,GO:0040012,GO:0042058,GO:0042176,GO:0042325,GO:0042327,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043525,GO:0043535,GO:0043549,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045670,GO:0045671,GO:0045732,GO:0045741,GO:0045742,GO:0045765,GO:0045786,GO:0045824,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045937,GO:0048471,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050731,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050816,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051093,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051222,GO:0051223,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051270,GO:0051276,GO:0051301,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051716,GO:0051726,GO:0055106,GO:0060090,GO:0060255,GO:0060284,GO:0060341,GO:0060541,GO:0061097,GO:0061098,GO:0061136,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070372,GO:0070374,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090049,GO:0090087,GO:0090316,GO:0090329,GO:0090558,GO:0097027,GO:0097708,GO:0098772,GO:0098813,GO:0104004,GO:0140096,GO:0140110,GO:1900407,GO:1900409,GO:1901184,GO:1901186,GO:1901214,GO:1901216,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902105,GO:1902106,GO:1902175,GO:1902177,GO:1902410,GO:1902494,GO:1902531,GO:1902533,GO:1902882,GO:1902884,GO:1903010,GO:1903011,GO:1903025,GO:1903026,GO:1903047,GO:1903050,GO:1903052,GO:1903146,GO:1903201,GO:1903203,GO:1903209,GO:1903214,GO:1903223,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903376,GO:1903378,GO:1903506,GO:1903533,GO:1903670,GO:1903706,GO:1903707,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904951,GO:1990234,GO:1990452,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000145,GO:2000273,GO:2000677,GO:2000678,GO:2001141,GO:2001204,GO:2001205,GO:2001233,GO:2001235,GO:2001242,GO:2001244 |
EggNOG free text desc. | Rab guanyl-nucleotide exchange factor activity |
EggNOG OGs | KOG0274@1,KOG0274@2759,KOG2127@1,KOG2127@2759 |
COG Functional cat. | L |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko00002,ko04121,ko04131 |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Model size | 554 |
Cds size | 552 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig10603.684.1 >prot_D-dudresnayi_contig10603.684.1 ID=prot_D-dudresnayi_contig10603.684.1|Name=mRNA_D-dudresnayi_contig10603.684.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=184bp
TSAPPAEPLAVTESVASIASLSSSSWMDNSGRSGVGGDSSVYLEPVVAPL SMVEWSHEPLLRLGRCELPQPREWTLADIGKEIEEDLGEALREQTDGSSN AGLGHGSYSLKAGAGLAVAAAGAGDGEELDRDSEKLLQCLEAVYSSDRVS EEVVMSVEETLRTKPSVQGMFLQVLRHASRRASA back to topmRNA from alignment at D-dudresnayi_contig10603:5197..9477+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig10603.684.1 ID=mRNA_D-dudresnayi_contig10603.684.1|Name=mRNA_D-dudresnayi_contig10603.684.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4281bp|location=Sequence derived from alignment at D-dudresnayi_contig10603:5197..9477+ (Desmarestia dudresnayi DdudBR16 monoicous) ACGTCTGCGCCTCCTGCTGAGCCTTTGGCGGTGACGGAGAGCGTTGCGAG
TATCGCGTCGCTGTCGTCGTCGTCTTGGATGGACAACTCTGGCCGCTCCG
GGTGCGTTTTTTGCGTTTATTTTGTATTTATAGCGGATTCCAGGGGGAAA
GCCTGTGTTGTTGTGTGCCTGGTATTCGATGTTGTAATTTTCAATTTTCG
TTTGTTTGTTGTTTCTCCATCAGAATGGCTATAGACTAGTACACAAGATG
ATGGCGCCGAAATTACCCTAAAAAGTATCCTGTAGAGCATGGGACGAACC
AGGGGAGTCAACTGCTTCATACCTTATCTGAGGACCGATAGACTCCGCGC
GACCGAAGTATCACACGGTGAGGTTGACGATTATCCCCTGGTCCCCGAGC
CAGACCAGTTTGGAACGTCACGGCTGATGTATTAGTAACGTATAGCTCTC
TACATCGCTTATGCGTGTGTTCCGTTATACGTAGCTATTTGTAGATTTCG
GAATGTGTTTCGTAGAAAACGTTACATGCGTACAGCACAGTATGCAAAAA
CTGAAGACGTTACATTTTAATACGCCCAACACCTGTTGTTTAAAAATCCG
ATCGTTCCCTTCCCTCTCTTATTCTTGCCGTGTGCGTCGTGTCCTTCCGT
GCACCCCCGCCGTGGTCGGTCGTTGCTGTGGCCGCTGTCGCTGCCGTTGC
TGACATCGTTGGCGACGACGTTGCTTTGCGTCTATGGGAAATTGGCTTGT
GGTCACGTGTGCCCCCTCCCCCCTTCCCTCCCCCTCCGAAGGGTCGGTGG
TGACAGTAGTGTTTATTTGGAGCCCGTAGTTGCGCCGTTGTCCATGGTTG
AGTGGTCGCACGAGCCGCTTCTTAGGCTCGGCCGCTGCGAGCTGCCCCAG
CCTCGAGAGTGGACGCTTGCCGACATCGGGAAAGAGGTGACCGTTTTTGT
TTTGTGCCCTTTTTGTGTGTCGTGATGCATGCGCGGAGGGGGGCGGGCTG
CTCTCTAGCTATTAATAGCAATCTACCTACTGTACTAGGACATGTGTTTT
CATAAAAACAGTTTTATTTGTTTTAGCTATTGGTATAATACGAAGTTGTG
GGCGCTGTCTGGGCTTACACGTTGTTGTTTTGGAACCCCACCGTGATACT
GTTGTTGGTGAGAGCTTATCTAGCGTTTTGGTAGCTTGGAGCTGTAGGAT
GTTCGTTTTATTATGTGATTAGTAATACCATAGGCTGTTCAGCATTTCGG
AAAATTCCATCACTAAGCCTATCCCGAACCCTAACGAGCACACGGTATTT
ATATAGAGTCGAAACATTTGTGTAGATCCCAGCTACCAACCGTAGTGCTA
CTCCTACTGGTTGTTGATGATGCTGACGATGATGAGTGATGAGTGATGAG
AGCCGCCTTAACAACATTGTAGGACGGGACTTTCTTTCTTCGTTTTATTT
TATGATTAGTACCAGCGTGGGCTGCTCAGCAGTTTCGGGAAAAATTTACC
GCTAACCCTGACCTGAACCCTAACGAACACACTTATACTAATGGCAAGTG
AAAACCTCTGGAAAGTTCCTGTAAAGTTCCGTCCTACAACATCATTCATT
GCTAAGCCTACTGGATGATGATGATGGTGATGATGAGCTGGTAATGATGG
TGGCGATGATGTTGATGACGTTGTTGATGATGATGACGGTGACAGTGGTA
ATGATATTGTAAGGATGATGATGGTCATGACGATGGTAGTAATAGTAATG
ATGGTGACGGTGGCGATGTTGGTGATATGACCACATTGTAGCTCGTTTCT
AGTATCACACCACGCCCGCAATCGCACGCCAGACAGTCTCGATGCCTACG
TGCTAGTACGTTACATCTTCTACCATTGTTTCCTCCCCGCCTTTTTTTTT
TTTACACCTTTTGGTTTTCACCCATTGCCGCTTTTTTTTTTGCTTTTATT
TTACAGATCGAGGAAGACCTTGGCGAGGCGCTGCGAGAACAGACGGACGG
CAGCTCTAACGCGGGGCTGGGGCATGGGTCGTACTCTCTCAAAGCGGGGG
CGGGGCTCGCCGTGGCGGCGGCTGGAGCCGGAGACGGAGAAGAGCTCGAC
CGAGATAGTGAAAAACTGTTACAGGTATATTTATTATATATCCGGTGTGT
TTTTTTTTTTTCTTTTTTGGATCTTTCGGCGGGCGGGTAAAAATAACGGT
AAATTTTTAAAGATCCAGCTGCCCAAACTTCCGCGGTCGGCTATGATATG
ATAGCTGCGTCGTGATTGTTGATTCATCTCTGTTTGCAAGACGCAATGTT
GCTGTTCCCGCGCGGGTACGATGGAGGGAGGTCCCTTGGCCTTGGAGGTA
TGTGTGTATAAATCTGATGGTGGTGTGACAAGTAGTCTAATGAGCTATTG
TAAGATGTCATGCATCGACCCCTCTGTTGGCACAAGGTTGGGAGTTCGAA
TCCAGGTACGAACAGAATCGCACTTTTTTTTTGTGGTCGTCTTTCTGTTT
GCGGAAAGCGCGACAACGCGAATATGTACAGCAATAATATTCGATGAAGG
TTTGACGAGCTGAGGGAATGCTGAAACCCTGTTGGCGATAACAACCGAGG
CATGTGCCGTGCCGGGGGGCACCTGTGAACACGGCTTGCCCAGAGATGCC
AACGAGCAATGAACTCCTGTGAGCTGGACTGGGAAAGTGTAAGTTAAAGA
CGAAAAAAATCAAGTACGATACTCTCTGTCTGTGTGATGTTGTGTTGGTA
TACTACTGTATGTGTATTACTCGTTTTTATCTATTCGACTTTTGCTTTCT
TTAATAATCAATGTGGTAGCTAGATATGCCTATTAATAGCTGTATTATCT
ATAAAACTGATTAAAAATGGACCAAAAATGCATTCCGAGGGGGGGTGCAC
TCTGTTTTTTTTGCTGTTGTGTTGGTTTTGCACAGTGCCTGGAGGCGGTG
TACTCGTCGGACCGGGTGTCGGAGGAGGTGGTGATGAGCGTGGAAGAGAC
CTTGAGGACGAAACCCTCAGTGCAGGGTATGTTTTTGCAGGTGAGACGAG
AAGGATGGGGGGGGGGGGGGGAGGGCGTACTCAGTTATTGCTTGCCTTAA
GTCACTTGACCAGTGACCACGCATCCCTTTCGAGACGGAGCACCGTTCCT
ACTCCTAACAAGAAACACCTCTAACATTTGGGCGCTCTTTTTACGTTTTT
GCCATATCCTTAATACACATACAAACCTTTTTGCTTATCTTATCCCCTTC
CTGATTCGCCTTTTTGTGCCGGGGAGGGGGAGGGGGTACTAATTACACTT
TTTTTTGGAGACATCTCGTATATATTATCGTCTCCTACAAAAGTGAAAAT
TAATTGATGTCTTGAATTATTAATAGTATGAATTAATTATTTTTTTGGCG
TTTCATACTATTAATAGAATTTCTACCTACTACCTACTACTACTATGATA
CTACTATACCACTACTACTACACAACAACTATACCACTACATACAGTAAC
TATACAGTACCTGCTGAATTGTATATTATATGTTGGTTTTAATGAGAAAA
ATGCCGAGCCAAGGCAGGCATTTTTTTTTCCGGCCTTTTTGGTGATATTA
CACTTAATATAGCATTGCGTAGAGACGTGGGTTACAGAAAATGGTTGGAA
TTTTCTGTACCTTACCCTAACCTACCTTAAGATGAAAAAAATGAAATGCA
CCGATTACGGCACAGACAAAATGCACCGATTCCACACTATTACACTATTA
CGACACGGTGTACCTATTGATAGTATCATTTTTCTGTATATGACGGCGCC
TGCGGCGACTGCGCTGCGCTTTACTAATTTTAATACCACAGGGTTTCCCT
ACTAGTTTCCATTGCCAAGCGGGGTCAGGCCCGGAAGGATAATGTCATTG
GTATAGTTATATAGTGCTGTCTATGCCGTAATCGGTGCATTTAATTTTTC
GCGACCCCCTATACTAATAGTGAGTAGTAAATTTATAAGAAATTTATGTC
TAAAGAGTGCTAATATATACTCGGGGGGGGGGGGGGCACCCCGTCTTCCC
TTTCGTACGTCGTGTTCGTGCCGGTCTTTCGTTTTTTTTACCGTGTTTTG
GAAAACGCGGTACTTGGATACCTTCAGTAAAATGAAGTCAACCAATCAAA
CCAAACTAGCCATAGTCGAGTCAAGCATCAAACAATCAACGAAACAATTG
TTCAATCAGCCAACCAACCATTCCATTGCCCAATTATTGTGTGAAGGTGT
TGCGACACGCGTCCCGGCGGGCCTCCGCGAG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig10603:5197..9477+ >mRNA_D-dudresnayi_contig10603.684.1 ID=mRNA_D-dudresnayi_contig10603.684.1|Name=mRNA_D-dudresnayi_contig10603.684.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at D-dudresnayi_contig10603:5197..9477+ (Desmarestia dudresnayi DdudBR16 monoicous) ACGTCTGCGCCTCCTGCTGAGCCTTTGGCGGTGACGGAGAGCGTTGCGAG TATCGCGTCGCTGTCGTCGTCGTCTTGGATGGACAACTCTGGCCGCTCCG GACGTCTGCGCCTCCTGCTGAGCCTTTGGCGGTGACGGAGAGCGTTGCGA GTATCGCGTCGCTGTCGTCGTCGTCTTGGATGGACAACTCTGGCCGCTCC GGGGTCGGTGGTGACAGTAGTGTTTATTTGGAGCCCGTAGTTGCGCCGTT GTCCATGGTTGAGTGGTCGCACGAGCCGCTTCTTAGGCTCGGCCGCTGCG AGCTGCCCCAGCCTCGAGAGTGGACGCTTGCCGACATCGGGAAAGAGGGT CGGTGGTGACAGTAGTGTTTATTTGGAGCCCGTAGTTGCGCCGTTGTCCA TGGTTGAGTGGTCGCACGAGCCGCTTCTTAGGCTCGGCCGCTGCGAGCTG CCCCAGCCTCGAGAGTGGACGCTTGCCGACATCGGGAAAGAGATCGAGGA AGACCTTGGCGAGGCGCTGCGAGAACAGACGGACGGCAGCTCTAACGCGG GGCTGGGGCATGGGTCGTACTCTCTCAAAGCGGGGGCGGGGCTCGCCGTG GCGGCGGCTGGAGCCGGAGACGGAGAAGAGCTCGACCGAGATAGTGAAAA ACTGTTACAGATCGAGGAAGACCTTGGCGAGGCGCTGCGAGAACAGACGG ACGGCAGCTCTAACGCGGGGCTGGGGCATGGGTCGTACTCTCTCAAAGCG GGGGCGGGGCTCGCCGTGGCGGCGGCTGGAGCCGGAGACGGAGAAGAGCT CGACCGAGATAGTGAAAAACTGTTACAGTGCCTGGAGGCGGTGTACTCGT CGGACCGGGTGTCGGAGGAGGTGGTGATGAGCGTGGAAGAGACCTTGAGG ACGAAACCCTCAGTGCAGGGTATGTTTTTGCAGTGCCTGGAGGCGGTGTA CTCGTCGGACCGGGTGTCGGAGGAGGTGGTGATGAGCGTGGAAGAGACCT TGAGGACGAAACCCTCAGTGCAGGGTATGTTTTTGCAGGTGTTGCGACAC GCGTCCCGGCGGGCCTCCGCGGTGTTGCGACACGCGTCCCGGCGGGCCTC CGCG back to top
|