mRNA_D-dudresnayi_contig10602.682.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10602.682.1
Unique NamemRNA_D-dudresnayi_contig10602.682.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig10602.682.1 vs. uniprot
Match: A0A250XNP6_9CHLO (zf-3CxxC domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XNP6_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 5.650e-27
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:    1 GYWIHREEFTGRKSFGYFKCERCLKNWVSAHSYPNFKQGCKKCDTEDYPIFLWQNMNDKQRDDYER----DETDK--PHDQDRCEACRYGVC 258
            GYW+ R++F GRKSFG F+C +C + W SAH++  +KQGC++CD    PI +W N  D+  DD +     DE D   PHD +RCEAC+ GVC
Sbjct:   26 GYWVQRKDFEGRKSFGVFQCAQCSRRWYSAHAFKEYKQGCQRCDRYYLPIAMWVNTGDRDSDDDDNGFGDDEKDDAGPHDSERCEACKAGVC 117
[Close]
BLAST of mRNA_D-dudresnayi_contig10602.682.1 vs. uniprot
Match: A0A7S1LXL6_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LXL6_ALECA)

HSP 1 Score: 97.8 bits (242), Expect = 1.460e-24
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    1 GYWIHREEFTGRKSFGYFKCERCLKNWVSAHSYPNFKQGCKKCDTEDYPIFLWQNMNDKQRDDYERDETDKPHDQDRCEACRYGVCLR 264
            G W+ RE+F G+KSFG F C  C + W +AH+   ++QGCK CD E    ++W+N     R +    + + PHD++RCEACR GVC R
Sbjct:   17 GQWVLREDFRGQKSFGCFFCSSCGRTWTTAHAQKKYRQGCKGCDEESLAYYMWENDGPDMRTERRDGQDEAPHDEERCEACRLGVCTR 104
[Close]
BLAST of mRNA_D-dudresnayi_contig10602.682.1 vs. uniprot
Match: A0A7S1FD28_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FD28_NOCSC)

HSP 1 Score: 89.4 bits (220), Expect = 9.940e-21
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:    1 GYWIHREEFTGRKSFGYFKCERCLKNWVSAHSYPNFKQGCKKCDTEDYPIFLWQNMNDKQRDDYERDETDKPHDQDRCEACRYGVC 258
            G W+ REEF G+KSFG+F CE C K W +AH+   ++Q CK C    +  +LW+N  D  RD  +R E  +PH++  CEAC +GVC
Sbjct:   17 GRWVTREEFWGKKSFGFFACE-CGKRWTTAHAQREYRQACKSCQWSSFATYLWKNDYDD-RDKRDRKEGGQPHEKALCEACWFGVC 100
[Close]
BLAST of mRNA_D-dudresnayi_contig10602.682.1 vs. uniprot
Match: A0A444TL57_ARMVU (zf-3CxxC domain-containing protein n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TL57_ARMVU)

HSP 1 Score: 53.5 bits (127), Expect = 4.670e-7
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:   34 RKSFGYFKCERCLKNWVSAHSYPNFKQGCKKCDTEDYPIFLWQNMNDKQRDDYERDETDKPHDQDRCEACR 246
            R+SFG+F+C +C K+W SA+S+ N  Q CK C  E YP        DK +   ++ E++ PH  + C  C+
Sbjct:   44 RRSFGWFRCAKCKKDWSSAYSWANTHQQCKTCLAEIYPY-----RQDKLKPGEDK-ESETPHRMNLCGKCK 108
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10602.682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A250XNP6_9CHLO5.650e-2748.91zf-3CxxC domain-containing protein n=1 Tax=Chlamyd... [more]
A0A7S1LXL6_ALECA1.460e-2444.32Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S1FD28_NOCSC9.940e-2146.51Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A444TL57_ARMVU4.670e-738.03zf-3CxxC domain-containing protein n=1 Tax=Armadil... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10602contigD-dudresnayi_contig10602:905..1171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.7359562-CDS-D-dudresnayi_contig10602:904..11711622927565.7359562-CDS-D-dudresnayi_contig10602:904..1171Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10602 905..1171 -
1690556809.5707233-CDS-D-dudresnayi_contig10602:904..11711690556809.5707233-CDS-D-dudresnayi_contig10602:904..1171Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10602 905..1171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10602.682.1prot_D-dudresnayi_contig10602.682.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10602 905..1171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10602.682.1

>prot_D-dudresnayi_contig10602.682.1 ID=prot_D-dudresnayi_contig10602.682.1|Name=mRNA_D-dudresnayi_contig10602.682.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=89bp
GYWIHREEFTGRKSFGYFKCERCLKNWVSAHSYPNFKQGCKKCDTEDYPI
FLWQNMNDKQRDDYERDETDKPHDQDRCEACRYGVCLR*
back to top

mRNA from alignment at D-dudresnayi_contig10602:905..1171-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10602.682.1 ID=mRNA_D-dudresnayi_contig10602.682.1|Name=mRNA_D-dudresnayi_contig10602.682.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at D-dudresnayi_contig10602:905..1171- (Desmarestia dudresnayi DdudBR16 monoicous)
GGTTATTGGATACACAGAGAAGAATTTACTGGCAGGAAGAGTTTTGGATA
TTTTAAGTGTGAGAGATGTTTAAAAAATTGGGTTTCAGCACACTCTTATC
CAAATTTTAAACAAGGCTGCAAGAAGTGTGACACTGAAGACTATCCAATA
TTCTTATGGCAAAATATGAATGACAAACAACGCGATGACTATGAGCGCGA
TGAAACAGATAAACCGCACGACCAAGACAGGTGTGAAGCATGTCGTTATG
GAGTATGTTTGCGCTGA
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10602:905..1171-

>mRNA_D-dudresnayi_contig10602.682.1 ID=mRNA_D-dudresnayi_contig10602.682.1|Name=mRNA_D-dudresnayi_contig10602.682.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at D-dudresnayi_contig10602:905..1171- (Desmarestia dudresnayi DdudBR16 monoicous)
GGTTATTGGATACACAGAGAAGAATTTACTGGCAGGAAGAGTTTTGGATA
TTTTAAGTGTGAGAGATGTTTAAAAAATTGGGTTTCAGCACACTCTTATC
CAAATTTTAAACAAGGCTGCAAGAAGTGTGACACTGAAGACTATCCAATA
TTCTTATGGCAAAATATGAATGACAAACAACGCGATGACTATGAGCGCGA
TGAAACAGATAAACCGCACGACCAAGACAGGTGTGAAGCATGTCGTTATG
GAGTATGTTTGCGCTGAGGTTATTGGATACACAGAGAAGAATTTACTGGC
AGGAAGAGTTTTGGATATTTTAAGTGTGAGAGATGTTTAAAAAATTGGGT
TTCAGCACACTCTTATCCAAATTTTAAACAAGGCTGCAAGAAGTGTGACA
CTGAAGACTATCCAATATTCTTATGGCAAAATATGAATGACAAACAACGC
GATGACTATGAGCGCGATGAAACAGATAAACCGCACGACCAAGACAGGTG
TGAAGCATGTCGTTATGGAGTATGTTTGCGCTGA
back to top