mRNA_D-dudresnayi_contig1059.670.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1059.670.1
Unique NamemRNA_D-dudresnayi_contig1059.670.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1059.670.1 vs. uniprot
Match: A0A6H5JAE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAE9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 9.810e-18
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  913 AVAEERLTAWLSGLKIRRPDAMRYAASLMADGFDSGEALRGVREEDLMHYDMKKGHARLVVRTL 1104
            AV  +RL  WLSGLKIR PDA RYA  L+ADGFDS EALRGVREE+L+ Y MKKGHARLVVR L
Sbjct:  447 AVVVQRLATWLSGLKIREPDASRYAGRLVADGFDSEEALRGVREEELLQYGMKKGHARLVVRLL 510
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BLAST of mRNA_D-dudresnayi_contig1059.670.1 vs. uniprot
Match: D8LG39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG39_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 9.810e-18
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  913 AVAEERLTAWLSGLKIRRPDAMRYAASLMADGFDSGEALRGVREEDLMHYDMKKGHARLVVRTL 1104
            A   ERL AWLSGLKIR PDA RYA  L+ADGFDS EALRGVREE+L+ Y MKKGHARLVVR L
Sbjct:  821 AAVVERLAAWLSGLKIREPDASRYAGRLVADGFDSEEALRGVREEELLQYGMKKGHARLVVRLL 884
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1059.670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAE9_9PHAE9.810e-1875.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG39_ECTSI9.810e-1876.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1059contigD-dudresnayi_contig1059:1519..4393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue6.1e-18
Seed eggNOG ortholog2880.D8LG39
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-11_002050.1
Exons2
Model size1963
Cds size1050
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1059.670.1prot_D-dudresnayi_contig1059.670.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1059 1597..3558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927564.13506-UTR-D-dudresnayi_contig1059:1518..15961622927564.13506-UTR-D-dudresnayi_contig1059:1518..1596Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1059 1519..1596 +
1690556808.8670664-UTR-D-dudresnayi_contig1059:1518..15961690556808.8670664-UTR-D-dudresnayi_contig1059:1518..1596Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1059 1519..1596 +
1622927564.1719716-UTR-D-dudresnayi_contig1059:3558..43931622927564.1719716-UTR-D-dudresnayi_contig1059:3558..4393Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1059 3559..4393 +
1690556808.9008582-UTR-D-dudresnayi_contig1059:3558..43931690556808.9008582-UTR-D-dudresnayi_contig1059:3558..4393Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1059 3559..4393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927564.1482227-CDS-D-dudresnayi_contig1059:1596..25411622927564.1482227-CDS-D-dudresnayi_contig1059:1596..2541Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1059 1597..2541 +
1690556808.878645-CDS-D-dudresnayi_contig1059:1596..25411690556808.878645-CDS-D-dudresnayi_contig1059:1596..2541Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1059 1597..2541 +
1622927564.1582446-CDS-D-dudresnayi_contig1059:3453..35581622927564.1582446-CDS-D-dudresnayi_contig1059:3453..3558Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1059 3454..3558 +
1690556808.888952-CDS-D-dudresnayi_contig1059:3453..35581690556808.888952-CDS-D-dudresnayi_contig1059:3453..3558Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1059 3454..3558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1059.670.1

>prot_D-dudresnayi_contig1059.670.1 ID=prot_D-dudresnayi_contig1059.670.1|Name=mRNA_D-dudresnayi_contig1059.670.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=350bp
MHREQVKSLERSLETVLKDCDIAAARTVTSLLEGIPAETEAGGKESPSPT
GTDAPTAPQGSLLLSVPESASTEPNNEEEKNLGCVAAVAAAISPPMLLLG
AEDDENSVPTSGVVGVSADGDVHGDRSSDGISESETDVEVDEDEDDDDGD
DDDGDDDVGTSGGSRRDEDDRVGGAAVRSDDARSSPPLMSFGDKNNEGEA
NLDDDGDSDGNDDGGVIPEHDNVNGTSDGGGGGGTRKGRHVTKRSGGRRG
DLLGIDGGGEVESNAEDDDDDDDGDDDDAVAEERLTAWLSGLKIRRPDAM
RYAASLMADGFDSGEALRGVREEDLMHYDMKKGHARLVVRTLTDDGVTL*
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mRNA from alignment at D-dudresnayi_contig1059:1519..4393+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1059.670.1 ID=mRNA_D-dudresnayi_contig1059.670.1|Name=mRNA_D-dudresnayi_contig1059.670.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2875bp|location=Sequence derived from alignment at D-dudresnayi_contig1059:1519..4393+ (Desmarestia dudresnayi DdudBR16 monoicous)
AGGCGGGATGAAGACGAGGCTCGCGCGGTCGTGGCGACCTTGGCCGACAA
GCTTCGAGCAGTCATCGACGAAAGAGACATGCACCGCGAACAGGTCAAGT
CTCTCGAACGATCCCTCGAGACAGTCCTGAAGGATTGTGATATCGCCGCC
GCTAGAACTGTGACGTCGTTACTGGAAGGAATTCCGGCGGAGACGGAGGC
TGGCGGCAAGGAGTCGCCGTCACCGACAGGCACAGATGCCCCGACGGCGC
CCCAAGGCTCGCTGTTGTTGTCTGTTCCCGAGTCTGCTTCTACAGAACCT
AATAATGAGGAGGAAAAGAACCTGGGCTGCGTTGCTGCTGTTGCTGCTGC
TATTTCTCCGCCGATGTTGTTGCTAGGCGCTGAGGATGACGAAAACTCGG
TGCCGACGTCTGGTGTGGTTGGAGTTAGCGCCGACGGCGATGTTCATGGC
GATCGGTCGTCGGATGGTATTTCCGAGTCGGAAACGGACGTCGAGGTGGA
TGAAGACGAAGACGATGATGATGGTGATGATGATGATGGTGATGATGATG
TTGGGACCTCCGGCGGTAGTAGGAGAGACGAAGACGACCGCGTTGGCGGG
GCTGCCGTCAGGAGTGACGACGCCCGTAGTAGTCCGCCGTTGATGTCCTT
CGGTGATAAGAATAACGAGGGCGAGGCCAACCTCGACGATGACGGTGACA
GTGATGGCAATGACGACGGAGGCGTTATCCCGGAGCATGACAATGTTAAC
GGGACCAGCGATGGCGGCGGCGGCGGTGGGACCAGGAAGGGAAGACACGT
GACAAAACGCTCGGGAGGAAGAAGGGGCGACTTGTTGGGCATCGACGGTG
GTGGGGAGGTAGAGAGCAATGCCGAGGACGACGATGATGATGATGATGGT
GATGATGATGATGCCGTCGCTGAAGAAAGACTGACCGCTTGGCTGTCGGG
GCTCAAGATCCGAAGGCCGGACGCGATGCGGTACGCGGCGAGTCTCATGG
CGGACGGCTTCGACAGCGGCGAGGTGAACAAACCAACAAACAACAACAGA
CAAAGAAGGGAGGGCGTACGTATGCATGTGTGTGTTTTTCATTTTTTATT
GCAAATACATCATCAGCCGTGACGTTCCAAACTGGTTCGGGGGCCAGGGG
ATAATCGTCAACCTCACTGTGTGATGCGTCGGTCGGGCGCGGAGTTTGTC
GATCCTCAGATAAGGTGTAGCGCAGTGACTCCCCTGGGTTATAAATCGGG
CACGACAAAAAAAAAAAGAAGACATGACAACATTAACTCGTGCTGGCTGT
CTCCCCCACATTTTTTTTTTATGTGTGATTTGATCACCTCGCATAGCTTT
AAGCCTCGCTCATAAATAGGAACGCCCGAGAAACGTTCGATGTTTTGGCG
TCTTGCATGGTAAGTGAGTTTTGCCGGATGCATTTATGTGGCAGCTCTTA
TTTTGTTTGGTGTATTTTGTATTTTATGCTGGAGCCCGATCGCCGTTAAA
TGTCGCTGTAGTAGCGGCCATCCCTTAGATACGGCCTACCGTAGATATTT
TGTGTTTGGTATTGTACGCCGACGAAAGACCCCCCGCTGCCAACCCTTGC
TTGTTAGCGCTCGTGATTCTGCGTAATATCTGATGGATACATATGTAACA
CACGCTCGTCCGGAATCTAACTTTAATTCTAGCGGTATATATTGTTAAAA
GTCTCCCTCAAATGTTACCAGTAACTTGAAACAAAAACAAAACTACACAC
ACAAAAATACAAAAAAAAATGAAAACGCACGCATTGATTAGTTTTACAAG
TGGTGTTTATCGATTGTTGTTGTATTCTGCATGTTTTGATTATATTAATA
TGTGTGTTCCCTCCTTCCTTACTGCTCTTCTTGTTCTTACTTTTATTTCT
TCTACTCCTCCTGCTACCGACGACACGGGTTTCAGGCATTGCGAGGCGTT
CGCGAGGAAGATCTGATGCATTACGACATGAAGAAGGGACACGCCAGGCT
CGTCGTACGTACTCTCACCGATGACGGCGTTACCCTGTAGCTACAACAGT
AGCACCGTACGCGTTACTGTTGTGCCCGGCTAAGGCGCGTGTTTCGATGT
GATTACAGGTTTATCTTGTTTTTTTTTTGTCGTGTGTGTATATGATGCGG
TATGGTACATGGTATGGTGGTCCCTGTGGGGGAAAAAAGAGGGCAAAACA
GTTTTGCCGCTTTTTTAGGCTTTTTTTTGTTTTTTGCTTTGGCTTCGATT
CGTAACGTTCCATCTTTTTTTTTTGTTTGACCTTACTATTTGCAGCTTTT
TTGTGCGACAGAGATAAGAAGGGATGAAACGGAATTTTCGGTAGGGGGAG
AGGGTTGTGAAAAGGTGTGTGCGCGTGTTTTTTTTTAGTATGTATATCAT
ACTGGTGTACTGGTAAAACATGCTGGTATATGCGAGTAGTGGTGTTTGGT
AGAGAGAATAAGCCTTACGCAATCTACGGTATAGCCTTAAGAATAATTTG
TGTGGTAATCTCTTTGAGCCGCACCAGGTGCTGTTGACTGTTTTGCGCTG
CGGATTTCTTGGCCGATGAGGTGTTGTTGTTGATTCTGTAGACTATACCA
TAGCATTTAGGCTTCTCTTTTTCTTTTCTTTTTTGTGGTGCGCGGATCTC
AATGGATAGTGTGGGTGATAACGTTTATTCCTGCAAGTATGTATGGGTCA
CAGGTAGGTGTAGAAATTTCTCAAGGGGGGGGTCACACTATGCAGCCAAG
CGCGTGGTTTTGGTGACACATTAGGACCATGTGTATGACGCGCTGACTTT
TTAGGTAAACCGGCACGGTTTTGTATGCAGTCCACATGTGAATTTTCACC
AGCGGGGGGCGCGCGCGCGGGAGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1059:1519..4393+

>mRNA_D-dudresnayi_contig1059.670.1 ID=mRNA_D-dudresnayi_contig1059.670.1|Name=mRNA_D-dudresnayi_contig1059.670.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2100bp|location=Sequence derived from alignment at D-dudresnayi_contig1059:1519..4393+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCACCGCGAACAGGTCAAGTCTCTCGAACGATCCCTCGAGACAGTCCT
GAAGGATTGTGATATCGCCGCCGCTAGAACTGTGACGTCGTTACTGGAAG
GAATTCCGGCGGAGACGGAGGCTGGCGGCAAGGAGTCGCCGTCACCGACA
GGCACAGATGCCCCGACGGCGCCCCAAGGCTCGCTGTTGTTGTCTGTTCC
CGAGTCTGCTTCTACAGAACCTAATAATGAGGAGGAAAAGAACCTGGGCT
GCGTTGCTGCTGTTGCTGCTGCTATTTCTCCGCCGATGTTGTTGCTAGGC
GCTGAGGATGACGAAAACTCGGTGCCGACGTCTGGTGTGGTTGGAGTTAG
CGCCGACGGCGATGTTCATGGCGATCGGTCGTCGGATGGTATTTCCGAGT
CGGAAACGGACGTCGAGGTGGATGAAGACGAAGACGATGATGATGGTGAT
GATGATGATGGTGATGATGATGTTGGGACCTCCGGCGGTAGTAGGAGAGA
CGAAGACGACCGCGTTGGCGGGGCTGCCGTCAGGAGTGACGACGCCCGTA
GTAGTCCGCCGTTGATGTCCTTCGGTGATAAGAATAACGAGGGCGAGGCC
AACCTCGACGATGACGGTGACAGTGATGGCAATGACGACGGAGGCGTTAT
CCCGGAGCATGACAATGTTAACGGGACCAGCGATGGCGGCGGCGGCGGTG
GGACCAGGAAGGGAAGACACGTGACAAAACGCTCGGGAGGAAGAAGGGGC
GACTTGTTGGGCATCGACGGTGGTGGGGAGGTAGAGAGCAATGCCGAGGA
CGACGATGATGATGATGATGGTGATGATGATGATGCCGTCGCTGAAGAAA
GACTGACCGCTTGGCTGTCGGGGCTCAAGATCCGAAGGCCGGACGCGATG
CGGTACGCGGCGAGTCTCATGGCGGACGGCTTCGACAGCGGCGAGATGCA
CCGCGAACAGGTCAAGTCTCTCGAACGATCCCTCGAGACAGTCCTGAAGG
ATTGTGATATCGCCGCCGCTAGAACTGTGACGTCGTTACTGGAAGGAATT
CCGGCGGAGACGGAGGCTGGCGGCAAGGAGTCGCCGTCACCGACAGGCAC
AGATGCCCCGACGGCGCCCCAAGGCTCGCTGTTGTTGTCTGTTCCCGAGT
CTGCTTCTACAGAACCTAATAATGAGGAGGAAAAGAACCTGGGCTGCGTT
GCTGCTGTTGCTGCTGCTATTTCTCCGCCGATGTTGTTGCTAGGCGCTGA
GGATGACGAAAACTCGGTGCCGACGTCTGGTGTGGTTGGAGTTAGCGCCG
ACGGCGATGTTCATGGCGATCGGTCGTCGGATGGTATTTCCGAGTCGGAA
ACGGACGTCGAGGTGGATGAAGACGAAGACGATGATGATGGTGATGATGA
TGATGGTGATGATGATGTTGGGACCTCCGGCGGTAGTAGGAGAGACGAAG
ACGACCGCGTTGGCGGGGCTGCCGTCAGGAGTGACGACGCCCGTAGTAGT
CCGCCGTTGATGTCCTTCGGTGATAAGAATAACGAGGGCGAGGCCAACCT
CGACGATGACGGTGACAGTGATGGCAATGACGACGGAGGCGTTATCCCGG
AGCATGACAATGTTAACGGGACCAGCGATGGCGGCGGCGGCGGTGGGACC
AGGAAGGGAAGACACGTGACAAAACGCTCGGGAGGAAGAAGGGGCGACTT
GTTGGGCATCGACGGTGGTGGGGAGGTAGAGAGCAATGCCGAGGACGACG
ATGATGATGATGATGGTGATGATGATGATGCCGTCGCTGAAGAAAGACTG
ACCGCTTGGCTGTCGGGGCTCAAGATCCGAAGGCCGGACGCGATGCGGTA
CGCGGCGAGTCTCATGGCGGACGGCTTCGACAGCGGCGAGGCATTGCGAG
GCGTTCGCGAGGAAGATCTGATGCATTACGACATGAAGAAGGGACACGCC
AGGCTCGTCGTACGTACTCTCACCGATGACGGCGTTACCCTGTAGGCATT
GCGAGGCGTTCGCGAGGAAGATCTGATGCATTACGACATGAAGAAGGGAC
ACGCCAGGCTCGTCGTACGTACTCTCACCGATGACGGCGTTACCCTGTAG
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